Nitrous oxide (N2O) is a potent and long-lived greenhouse gas, and the ocean represents its primary natural source. An accurate understanding of the emission intensity and driving mechanisms of oceanic N2O directly affects the estimation of atmospheric N2O budget and the projection of climate change. Recent studies have demonstrated that ammonia-oxidizing archaea (AOA) dominate nitrification in marine environments and are thus recognized as an important biological source of marine N2O production. However, their specific metabolic pathways, regulatory mechanisms, and environmental response patterns remain poorly understood. This paper systematically reviews the spatial distribution characteristics of marine N2O and its major biogeochemical sources, with a particular focus on the potential metabolic pathways and key intermediates involved in AOA-derived N2O production. We further synthesize the current understanding of how environmental factors—including dissolved oxygen, pH, temperature, substrate availability, and organic carbon—regulate AOA nitrogen metabolism and N2O generation. In addition, we discuss the potential mechanisms underlying the shift in AOA metabolic strategies and variations in N2O yield under multifactorial coupling scenarios the scenario of multifactorial coupling. On this basis, we identify the major knowledge gaps in existing research, particularly regarding culture systems, mechanistic elucidation, in situ validation, and global-scale quantification. Finally, we proposed future research directions for AOA-derived N2O emissions under ongoing oceanic changes. This review aims to advance the understanding of the biogeochemical mechanisms governing marine N2O production and to provide a theoretical basis for improving the parameterization of marine nitrogen cycle and climate models.
Continue reading ‘A hidden driver of the greenhouse effect: production mechanisms and climate implications of N2O derived from marine planktonic ammonia-oxidizing archaea’Posts Tagged 'biogeochemistry'
A hidden driver of the greenhouse effect: production mechanisms and climate implications of N2O derived from marine planktonic ammonia-oxidizing archaea
Published 18 August 2026 Science Leave a CommentTags: biogeochemistry, phytoplankton, review
Persistence of Arctic Ocean acidification under negative emissions
Published 14 August 2026 Science Leave a CommentTags: Arctic, biogeochemistry, chemistry, globalmodeling, modeling
Although net negative emissions of carbon dioxide (CO2) are essential to meet climate targets, little is known about how declining atmospheric CO2 levels will affect ocean acidification. Here, by analysing the acidity ([H+]) and corrosivity to aragonite (ΩArag) in eight Earth system models that made simulations under rising then falling CO2 levels, we identify the Arctic as a hotspot for delayed reversibility of ocean acidification. Under falling CO2, Arctic surface waters remain comparatively more acidic, and aragonite-corrosive conditions (ΩArag < 1) persist until atmospheric CO2 drops ~120 ppm below the threshold at which they first appeared under rising CO2. This hysteresis arises from the erosion of the natural surface-layer deficit in dissolved inorganic carbon, initially maintained by sea ice limiting air–sea gas exchange and not fully restored as sea ice recovers during CO2 decline. Thus, the Arctic Ocean experiences not only the greatest acidification but also the most delayed benefits from negative emissions.
Continue reading ‘Persistence of Arctic Ocean acidification under negative emissions’Localized biogeochemistry and seasonality govern carbonate chemistry in estuarine mangrove ecosystems
Published 3 August 2026 Science ClosedTags: biogeochemistry, chemistry, field, Indian
Sundarbans, the world’s largest contiguous mangrove ecosystem and representing shallow coastal Bay of Bengal of the Northern Ocean, faces dynamic climate variations, including ocean acidification. To delineate ocean acidification from natural pH variations, it is crucial to perform long-term measurements of multiple carbonate chemistry parameters such as pH, total alkalinity (TA), and dissolved nutrients, among others. In the present study, surface water carbonate chemistry parameters, including TA, pH, and dissolved nutrients (o-phosphate and silicate), were analysed monthly between 2014 and 2022 in three pre-defined stations, namely Stn1, Stn2, and Stn3, part of Sundarbans Biological Observatory Time Series (SBOTS) located in Sagar Island, the largest island of the Indian Sundarbans. The observed deviation from the linear TA-Salinity curve in the studied sites of SBOTS showed the influence of freshwater in modulating TA. Generalized Additive Model (GAM) revealed substantial seasonal variability in the controls on TA. During monsoon, salinity was a dominant driver of carbonate chemistry, consistent with enhanced freshwater discharge. In contrast, during the post-monsoon season, primary productivity as indicated by the relationship with Chla, dissolved silicate, was found to exert a stronger influence on TA variability. Multilinear regression (MLR) analysis of calculated pCO2 further supported these seasonal trends. Overall, the findings highlight the importance of season-specific assessments, highlighting the critical role of freshwater discharge in shaping estuarine carbonate dynamics. These insights are vital for predicting the vulnerability and response of mangrove estuaries under future climate change scenarios.
Continue reading ‘Localized biogeochemistry and seasonality govern carbonate chemistry in estuarine mangrove ecosystems’Seasonal variations in the bulk density of planktic foraminiferal tests in response to oceanographic changes in the western North Pacific
Published 3 August 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, field, laboratory, North Pacific, zooplankton
Ocean acidification (OA) is a major component of ongoing global environmental change, yet its biological impacts on open-ocean calcifiers remain insufficiently quantified. Here, we investigate seasonal variability in the individual test density of the planktic foraminifer Globigerina bulloides in the western North Pacific. Test density was determined using high-resolution microfocus X-ray computed tomography, enabling micron-scale structural assessment. Time-series samples collected by sediment traps moored at 150 m and 540 m at station K2 (2008–2009) reveal pronounced seasonal variability, with test density reduced by ~ 20% during winter relative to other seasons. Seasonal reductions were associated with enhanced vertical mixing and positively correlated with mixed-layer pH, carbonate-ion concentration, and temperature. Additional plankton-tow samples collected between 2010 and 2016 further support a strong linkage between carbonate chemistry and calcification intensity. Multiple regression analysis shows that carbonate-ion concentration independently explains 46.6% of the variance in test density, whereas temperature accounts for only 0.25%, indicating that carbonate-ion availability exerts a dominant control on test density. Given the ongoing decline in carbonate-ion concentration in the North Pacific (~ 0.77 µmol kg−1 yr−1), our results imply an annual decrease of ~ 2 µg mm−3 in foraminiferal test density. Continued OA may therefore reduce biogenic CaCO3 shell density, potentially weakening the efficiency of the carbonate-based biological carbon pump. This study provides quantitative field-based evidence linking seasonal carbonate chemistry to shell density variability in open-ocean calcifiers.
Continue reading ‘Seasonal variations in the bulk density of planktic foraminiferal tests in response to oceanographic changes in the western North Pacific’Thermal regulation of benthic fluxes in temperate estuaries
Published 2 July 2026 Science ClosedTags: biogeochemistry, laboratory, multiple factors, sediment, temperature
The effects of short-term heatwave extremes on biogeochemical cycling and fluxes in a temperate estuary of a semi-dry climate were studied using an experimental setup of temperature-controlled benthic incubations. The results demonstrated a strong thermal effect, notably under extreme warming events, for shifts in exchanges across the sediment-water interface. Extreme heatwave conditions (+5 °C of the seasonal mean) boosted acidification, hypoxia, and ammonification, due to accelerated remineralization rates, resulting in strong effluxes of NH4, Si(OH)4, and PO4 to the overlying water. These excessive nutrient loads may increase eutrophication risk via runoff or tidal action, specifically in adjacent oligotrophic coastal waters. CO2 production rates reached ~4000 µatm under extreme hypoxia and acidification, 2.3-fold higher than the ambient rate, with a maximal flux of ~27.0 mmol m-2 d-1. Hence, our experiments show that marine heatwaves amplify CO2 emissions while reducing the CO2 buffering capacity of temperate estuaries. It emphasizes temperate estuaries as highly sensitive ecosystems to climate change.
Continue reading ‘Thermal regulation of benthic fluxes in temperate estuaries’Skeletal porosity of a cold-water coral increases with decreasing aragonite saturation state along a depth gradient in the Mediterranean Sea
Published 29 June 2026 Science ClosedTags: biogeochemistry, biological response, BRcommunity, chemistry, corals, laboratory, Mediterranean, physiology
Background
Cold-water corals (CWCs) are key ecosystem engineers that create complex three-dimensional habitats much like tropical reefs, but in deep, cold seas. However, like other reef-building systems, they are increasingly threatened by climate change and ocean acidification. CWC communities in the Mediterranean Sea may be especially vulnerable because these waters absorb more atmospheric CO2 than the global ocean, making it a mesocosm that mirrors broader global trends affecting marine life. Since calcification is energetically costly and likely becomes even more demanding as pH and carbonate ion availability decline, understanding how the decrease in aragonite saturation state (Ωarag) affects biomineralization is essential for predicting the future of these corals.
Results
Here, we investigated skeletal structural and compositional changes of the scleractinian CWC Desmophyllum dianthus along an Ωarag gradient in the Mediterranean Sea using specimens collected between 400 and 1200 m depth. Our findings indicate that skeletal porosity increases at the macro-scale with decreasing Ωarag, while micro- and nano-scale structural and compositional features remained unaffected.
Conclusions
The persistence of micro- and nano-scale skeletal features across an 800 m depth gradient suggests that D. dianthus maintains tight biological control over mineralization at these scales, even as Ωarag declines. This control does not extend to the macro-scale, where increasing porosity alters the skeleton’s overall architecture under lower Ωarag. D. dianthus thus appears to preserve the fundamental “building blocks” of its skeleton while changing its larger-scale structure, a decoupling that may make macro-scale porosity an early marker of acidification stress in CWCs.
Continue reading ‘Skeletal porosity of a cold-water coral increases with decreasing aragonite saturation state along a depth gradient in the Mediterranean Sea’A basin-wide assessment of pH changes in the Mediterranean Sea based on reanalysis products
Published 19 June 2026 Science ClosedTags: biogeochemistry, chemistry, Mediterranean, modeling, regionalmodeling
Ocean acidification, driven by increasing atmospheric CO2 concentrations, poses a growing threat to marine ecosystems and biogeochemical processes. The Mediterranean Sea, characterized by complex circulation patterns and distinct hydrographic sub-basins, represents a sensitive region for assessing basin-scale pH variability. However, long-term in situ pH observations remain spatially sparse and unevenly distributed, limiting the assessment of coherent spatiotemporal trends across the basin. Here, we present a basin-wide spatiotemporal assessment of pH trends in the Mediterranean using an 18-year biogeochemical reanalysis dataset from the Copernicus Marine Environment Monitoring Service. Our analysis reveals a consistent vertical structuring of pH trends, with negative trends in surface waters and contrasting, often neutral to weakly positive tendencies at depth. The magnitude and vertical extent of these trends vary regionally and are closely linked to local circulation regimes, water-mass formation processes, and remineralization dynamics. In deep-water formation regions such as the Adriatic, Ionian, and Aegean Seas, negative pH trends extend throughout much of the water column, whereas in the Levantine Basin, mesoscale circulation structures confine pH changes primarily to a relatively thin surface layer. These results demonstrate that basin-scale analyses based on high-quality, publicly accessible biogeochemical reanalysis products, such as CMEMS, can provide a spatially integrated perspective on long-term pH variability, complementing existing observational records by bridging spatial and temporal gaps. The framework presented here offers a reproducible approach for systematically assessing depth and region resolved pH trends.
Continue reading ‘A basin-wide assessment of pH changes in the Mediterranean Sea based on reanalysis products’Physical-chemical gradients, CO2 venting dynamics and microbial community composition in a shallow Mediterranean CO2-rich hydrothermal system
Published 19 June 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, community composition, Mediterranean, otherprocess, physiology, prokaryotes, vents
Shallow-water CO2-rich hydrothermal systems provide natural laboratories for studying localized ocean acidification under realistic environmental conditions. Here, we present a multidisciplinary characterization of the Calent mound CO2-rich system (Columbretes Islands, Western Mediterranean), based on oceanographic surveys conducted in 2020 and 2021. Localized pH anomalies were detected directly above active vents, reaching maximum reductions of 1.12 pH units, whereas water-column temperature anomalies were minimal and subsurface sediment temperatures exceeded ambient seawater by 5.67 °C. Gas analyses indicated high CO2 concentrations (0.094 ± 0.008 mol L− 1), with heterogeneous degassing regimes, ranging from sporadic to continuous emissions and an average flux of 189.4 ± 15.4 kg CO2 m− 2 yr− 1 at the active vent field. Vent fluids were significantly enriched in dissolved inorganic nutrients, particularly silicate, phosphate, nitrate+nitrite, and ammonium. Benthic microbial mats hosted metabolically diverse prokaryotic and eukaryotic communities, including hydrothermal-associated taxa such as Zetaproteobacteria, Campylobacterota, and Nitrosophaeria, consistent with iron, sulfur, and ammonia oxididation metabolisms. Several microbial core taxa persisted across years despite shifts in relative abundance. These findings demonstrate that Calent mound sustains an intense yet highly localized biogeochemical environment within the photic zone, where CO2 venting and nutrient inputs jointly influence carbonate chemistry and microbial community structure.
Continue reading ‘Physical-chemical gradients, CO2 venting dynamics and microbial community composition in a shallow Mediterranean CO2-rich hydrothermal system’Large CO2 seeps and hydrate field on the seafloor offshore Mayotte Island
Published 16 June 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, cnidaria, community composition, corals, field, Indian, otherprocess, vents
Gas hydrates modulate methane and carbon dioxide benthic fluxes into the ocean and usually occur embedded in the sediment. Here we use acoustic surveys alongside optical and geochemical observations from remotely operated vehicles to show that CO2 hydrate mounds are forming directly on the seafloor atop a large liquid CO2 vent field offshore Mayotte Island. The venting, which initiated following volcanic activity in 2018, deleteriously impacts surrounding coral communities due to local acidification.
Continue reading ‘Large CO2 seeps and hydrate field on the seafloor offshore Mayotte Island’Hydrodynamic control of coral metabolism: a coupled modeling approach linking flow, physiology, and reef-scale biogeochemistry
Published 2 June 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, community composition, corals, individualmodeling, modeling, otherprocess, physiology, South Pacific
Tropical coral reefs exhibit high variability in coral metabolism, driven by complex interactions among physical, chemical, and biological processes. Understanding the spatiotemporal patterns of coral metabolism and their drivers is critical, as such variability may underpin corals’ adaptive capacity to withstand a warming and acidifying ocean. Here, we use a coupled hydrodynamic–biogeochemical–physiological model to investigate spatial and diel variations in coral metabolic processes (photosynthesis, respiration, and calcification) across Moorea’s north shore reef system under three prevailing wave regimes. We find that photosynthesis varies little across the reef, whereas respiration and calcification show pronounced spatial heterogeneity. These spatial patterns closely mirror the ones in seawater carbonate chemistry and depend strongly on wave-driven flow. Hydrodynamics regulate diffusive exchanges between coral tissues and surrounding seawater, and eventually generate distinct internal chemical environments (in the coelenteron and calcifying fluid) across the reef. Landward reef regions exhibit the greatest spatial and diel variability in coral metabolism. Low-wave, slow-flow conditions amplify metabolic fluctuations throughout the reef, but more strongly in the landward regions. Overall, our results highlight how interactions among transport processes, carbonate chemistry, and coral physiology produce strong day-night fluctuations and spatially heterogeneous but structured metabolic patterns across the reef, which vary systematically with wave conditions.
Continue reading ‘Hydrodynamic control of coral metabolism: a coupled modeling approach linking flow, physiology, and reef-scale biogeochemistry’Present and future seawater CO2 chemistry across multiple coral reef habitats and scales at Dongsha Atoll and Taiping Island in the South China Sea
Published 22 May 2026 Science ClosedTags: biogeochemistry, chemistry, corals, field, laboratory, North Pacific, sensor
Coral reefs consist of diverse benthic habitats that influence seawater CO2 chemistry variability on multiple spatial and temporal scales. Understanding the present-day seawater CO2 chemistry variability across both habitat-specific and reef-wide scales is critical to accurately predict the effects of future environmental change. Here, we utilize autonomous sensors and discrete seawater samples across diverse habitats at multiple scales ranging from habitat-specific (inner lagoon, patch reefs and seagrass beds; 0.02–0.72km2) to reef-wide scales at Dongsha Atoll (250km2) and Taiping Island (20km2) to characterize seawater chemistry. Across all habitats, daily mean pH ranged from 7.79–8.60 with mean diel variability ranging from 0.19–0.91. Spatially, pH variability ranged from 0.08 (patch reef) to 1.29 (inner lagoon). Biogeochemical modification of seawater chemistry was dominated by organic carbon cycling at individual habitat scales, whereas inorganic carbon cycling dominated at the scale of Dongsha Atoll. The largest alkalinity depletion (net calcification) was associated with patch reef habitats, whereas the highest alkalinity repletion was associated with a semi-enclosed lagoon. Under two climate change scenarios (linear dissolved inorganic carbon increase derived from historical observations and the CMIP6 SSP5-8.5 pathway), pH and/or aragonite saturation state (ΩAr) observations across all habitats in this study are projected to be below proposed thresholds for net reef accretion (pH < 7.7: inner lagoon ~ 10–13%; seagrass beds ~ 21–44%; patch reefs ~ 0–100%; atoll-wide ~ 4–98% of observations) or net dissolution (ΩAr < 2.92: inner lagoon ~ 10–18%; seagrass beds ~ 44–75%; patch reefs ~ 77–100%; atoll-wide ~ 94–100% of observations) by the year 2100. The results highlight the importance of habitat-specific and scale-conscious assessments of future coral reef environmental conditions.
Continue reading ‘Present and future seawater CO2 chemistry across multiple coral reef habitats and scales at Dongsha Atoll and Taiping Island in the South China Sea’High-resolution temporal biogeochemical variations in a seagrass-coral cohabitate ecosystem: day-night, rain, and coral spawning
Published 14 May 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, community composition, corals, field, laboratory, North Pacific, otherprocess, phanerogams, physiology, reproduction
Highlights
- Seagrass-coral habitats act as CO2 sources driven by intense nighttime respiration
- High-resolution data enable predictive modeling of DIC, DOC, and POC dynamics
- Metabolic cues govern DIC, while temperature and alkalinity regulate POC and DOC
- Episodic coral spawning and rainfall trigger rapid ocean acidification
- Short-term disturbances dramatically shift organic and inorganic nutrient loads
Abstract
Seagrass meadows and coral reefs are global hotspots for productivity, yet they are often studied in isolation despite their intense biogeochemical connectivity. Significant gaps remain in understanding how coupled inorganic and organic processes within the water column drive blue carbon services in such mixed habitats, particularly during rapid environmental disturbances. Here, we investigated a unique, intertwined ecosystem in the Dongsha Atoll, where massive Porites corals are distributed on seagrass meadows, creating a natural laboratory for studying water column carbon biogeochemistry. During a 10-day sampling period, we collected continuous hydrological and discrete biogeochemical data at two- to four-hour intervals. Our results reveal that the dissolved inorganic carbon (DIC) covaried with dissolved oxygen and pH in strong diurnal patterns, which were governed by photosynthesis and respiration. As an outcome, variable but mostly high pCO2 values (141–2070 μatm) indicate the seagrass meadow was a source of CO2 to the atmosphere due to strong night-time respiration. Particulate organic carbon (POC) increased with temperature but showed no diurnal pattern. Dissolved organic carbon (DOC) showed a weak diurnal pattern and was linked to variations in POC and total alkalinity, highlighting the tight coupling between the organic production of the meadow and the inorganic chemistry of the calcification framework. Additionally, coral spawning led to a surge in organic content and changed inorganic nutrient levels. Rainfall events significantly acidified the ocean and enhanced submarine groundwater discharge to the seagrass-coral habitat. The distinctive contributions of this study are the extremely high temporal resolution of discrete samples, allowing the simultaneous tracking of multiple organic and inorganic pools during natural disturbances. The high-resolution data provide fundamental information for parametrizing models that explain DIC, POC, and DOC, which yield insights into organic carbon cycling in seagrass meadow-coral habitats.
Continue reading ‘High-resolution temporal biogeochemical variations in a seagrass-coral cohabitate ecosystem: day-night, rain, and coral spawning’Aragonite saturation state and coral reefs health assessment in Sri Lanka
Published 11 May 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, corals, field, Indian
Ocean acidification (OA) and nutrient enrichment can separately or together threaten coral reefs by reducing calcification efficiency and increasing physiological stress, ultimately weakening reef resilience. Therefore, the study evaluates the prevailing OA level over the Sri Lankan coral reef areas using the aragonite saturation state (ΩAr) and assesses the nitrate (NO3−), and phosphate (PO43−) concentrations over the coral sites. The study was conducted on coral reefs on the eastern coast (EC), southern coast (SC), northern coast (NC), and west coast (WC) of Sri Lanka from April to June 2024. A total of 63 seawater samples were collected around each coastal site for analysis. The ΩAr were supersaturated (ΩAr > 1) and ranged from 2.98 ± 0.04 to 4.92 ± 0.12. Throughout the study period, the study sites had ΩAr values exceeding 2.92 ± 0.16, indicating that the nation’s corals were resilient to deterioration, and the comparative analysis demonstrates that these sites were not vulnerable to OA. However, the NC exhibited significantly (P < 0.05) the lowest ΩAr values (3.2 ± 0.64), positioning the regions near the lower bound of optimal calcification conditions. While ΩAr values indicate low OA stress during sampling, elevated NO3− concentrations (2 – 5 μmol L−1) in SC (2.19 ± 1.28 µmol L−1) and WC (3.52 ± 1.48 µmol L−1) may exacerbate coral bleaching during thermal stress events, representing a co-stressor rather than OA effect. Coral bleaching HotSpot (HS) identification emphasizes how spatially distributed HS are from January to June. The OA risk assessment confirmed that climate change will bring high risk to the coral calcification, reproduction, and damage to the breeding ground, which impact on the ecology and economy of Sri Lanka.
Continue reading ‘Aragonite saturation state and coral reefs health assessment in Sri Lanka’Light and tidal inundation and exposure regulate the sensitivity of estuarine benthic greenhouse gas fluxes to warming and ocean acidification
Published 28 April 2026 Science ClosedTags: biogeochemistry, biological response, Indian, laboratory, light, multiple factors, physiology, primary production, respiration, sediment
Coastal sediments are globally significant sources and sinks of greenhouse gases (GHGs), yet their contributions to climate feedbacks of warming and ocean acidification remain uncertain, in part due to limited understanding of short-term variability. Here, we use a fully factorial laboratory experiment to disentangle how diel light–dark and tidal inundation and exposure interact with warming and elevated pCO2 to regulate benthic fluxes of CO2, CH4, and N2O in estuarine sediments, alongside concurrent changes in benthic oxygen exchange. While warming and pCO2 exerted strong independent effects, their influence was shaped by diel and tidal fluctuations in redox conditions and oxygen availability, reflecting shifts in metabolic balance between primary production and respiration. Light consistently limited CO2, CH4, and N2O emissions through enhanced autotrophic uptake and oxygenation, while dark promoted anaerobic production pathways. N2O showed the greatest sensitivity to the combined effects of climate forcing and redox dynamics. Despite warming-driven stimulation of benthic heterotrophy and the production of all GHGs, CO2 remained the dominant greenhouse gas, with minimal CH4 and N2O fluxes due to the limited organic matter availability within the sediment. This reflects the strong redox controls on CH4 and N2O production, which relies on both oxygen depletion and organic substrate supply. Our findings emphasize that fine-scale temporal variability can significantly shape both the magnitude and climate sensitivity of benthic GHG emissions. Capturing these fine-scale controls is essential for accurately modeling the contributions of estuarine sediments to global GHG budgets and their feedbacks.
Continue reading ‘Light and tidal inundation and exposure regulate the sensitivity of estuarine benthic greenhouse gas fluxes to warming and ocean acidification’Coccolithophore genetic diversity, morphology, and contribution to particulate inorganic carbon production in Western North American coastal waters
Published 27 April 2026 Science ClosedTags: abundance, biogeochemistry, biological response, chemistry, field, molecular biology, morphology, North Pacific, phytoplankton
Coccolithophores, as calcifying phytoplankton, play a critical role in the global carbon cycle by producing calcium carbonate (CaCO3) in the ocean through their calcitic coccoliths. Here we examine Gephyrocapsa huxleyi (formerly Emiliania huxleyi) and related species abundance and genetic diversity along the West Coast of North America from samples taken on the 2021 NOAA West Coast Ocean Acidification (WCOA21) cruise, along the margin from British Columbia, Canada, to San Diego, California, USA. Significant carbonate chemistry gradients were observed across 17 transects, mostly in the onshore-offshore and north-to-south direction. Abundance and morphometrics of Gephyrocapsa spp. was evaluated using real-time PCR of mitochondrial cytochrome c oxidase subunit 3 ( cox3 ) gene and by microscopy. Variation in PIC concentrations, G. huxleyi and related species abundance, and coccosphere thickness were found to be associated with the gradients in carbonate chemistry and nutrient concentrations (phosphate, nitrate, nitrite, ammonium) across stations sampled during the cruise. We identified 5 unique amplicon sequence variants (ASVs) of Gephyrocapsa spp. cox3 that systematically varied in relative abundance across the California Current System. Southern California locations had greater diversity in cox3 sequences than northerly locations. These analyses represent baselines for evaluation of the impacts of future environmental changes in coastal waters along this productive upwelling regime.
Continue reading ‘Coccolithophore genetic diversity, morphology, and contribution to particulate inorganic carbon production in Western North American coastal waters’Quantifying the role of land-based inputs on coastal ocean acidification from a tropical semi-arid region
Published 15 April 2026 Science ClosedTags: biogeochemistry, chemistry, Indian
The land-based inputs in the form of river discharge, wastewater runoff, and submarine groundwater discharge (SGD) are among the major land-based natural pathways for the Coastal Ocean Acidification (COA). This study evaluates the direct influence of these land-based drivers, along with the aerosol deposition, and in-situ biogeochemical processes on COA along a highly populated tropical coastal area. The results suggest that spatially, aerosol deposition and in-situ biogeochemical processes in Kutch region are the major (72%) contributors to COA. In contrast, cumulative land runoff significantly (70%) contributes to COA in South Gujarat. Among these drivers, river water mixing causes the most significant pH decrease (0.093), while wastewater input results in the minimum pH drop (0.016) along the Gujarat coast. The seasonal nature of river water discharge, compared to continuous seepage of both fresh and recirculated (saline) SGD, highlights the role of SGD in COA. These findings align with the global studies represented SGD as one of the prominent land-based drivers for COA. Additionally, the low annual average pH (~ 7.954) along the Gujarat coast is attributed to the region’s macrotidal characteristics, which facilitate the release of sediment bound CO2, leading to a reduction in pH levels. The findings from the current study emphasis the need for comprehensive data collection on physicochemical and biogeochemical parameters to accurately assess COA dynamics and quantification of spatial and seasonal impacts of each driver along the India’s west coast.
Continue reading ‘Quantifying the role of land-based inputs on coastal ocean acidification from a tropical semi-arid region’Individual foraminiferal analysis: a promising tool for high-resolution temperature and pH reconstruction
Published 27 March 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, field, methods, paleo, protists
Compared with traditional bulk foraminiferal analysis methods, in situ analysis of individual foraminiferal tests (individual foraminiferal analysis or IFA) offers several advantages over traditional bulk methods, including enhanced temporal resolution where fossiliferous sample material is limited as well as potentially resolving seasonal-scale climate variability in deep time. Despite these advantages, applications of element-to‑calcium (El/Ca) ratios and δ11B in benthic foraminifera using IFA remain limited, and the biogeochemical drivers of intra-test and inter-test geochemical variability are poorly constrained. In this study, we systematically evaluate El/Ca ratios and δ11B in individual benthic foraminifera. By analysing Holocene epifaunal benthic foraminiferal species Cibicidoides wuellerstorfi from a deep ocean core site (ODP Site 999), we conclude that intra- and inter-test variabilities are regulated by ontogenetic effects resulting in inter-test variabilities of ±0.14 mmol/mol Mg/Ca, ± 14 μmol/mol B/Ca, and ± 0.18 ‰ δ11B. Application of the IFA method to epifaunal benthic foraminifera species Cibicides lobatulus from a box core in the English Channel, UK reveals ~0.1 pH units acidification and ~ 1 °C warming since the mid-19th century. By demonstrating that individual-level variability in reconstructed temperature and pH tracks seasonal trends in the available contemporaneous water-column instrumental measurements at the same site, we provide a ground-truthing to our multi-proxy IFA methodology, and also demonstrate the potential for benthic IFA to provide seasonal-scale reconstructions of ocean climate over hundreds to millions of years.
Continue reading ‘Individual foraminiferal analysis: a promising tool for high-resolution temperature and pH reconstruction’Long-term pH trends and spatiotemporal variability of the carbonate system in Jakarta Bay
Published 20 March 2026 Science ClosedTags: biogeochemistry, chemistry, field, South Pacific
Jakarta Bay, an industrialized and densely inhabited coastal area, presents considerable environmental issues as a result of excessive organic pollution and nutrient inflow. Understanding the spatiotemporal variability of the carbonate system in such an affected bay is critical for assessing marine ecosystem health. The spatiotemporal variability of the carbonate system, pH, partial pressure of carbon dioxide (pCO2), total alkalinity (TAlk), and dissolved inorganic carbon (DIC) was investigated in Jakarta Bay during the rainy and dry seasons of 2023. pH datasets from 2011 to 2023 were also collected from the Environmental Agency of DKI Jakarta (DLH DKI Jakarta) for trend analysis. The temporal analysis shows that during the SE monsoon, the lowest pH (mean: 8.06 ± 0.43); lowest TAlk (mean: 2099 ± 340 µmol kg-1); highest pCO2 (mean: 879 ± 1177 µatm); and highest DIC (mean: 2068 ± 806 µmol kg-1) were observed. The pH distribution gradually increased from the river outlet to the outer bay; inversely, pCO2, TAlk, and DIC gradually decreased. Furthermore, from 2011 to 2023, pH in Jakarta Bay showed a slight upward tendency that was statistically insignificant, reflecting high variability and the influence of local biogeochemical processes. The carbonate system variability reflects changes in biogeochemical (Chl-a, DO and nutrients) and physical (SST and Sal) parameters. In addition, the semi-enclosed hydrodynamic properties, together with the influence of human activities, including a continuous supply of nutrients and organic materials from the mainland through the incoming rivers, further affected the balance of the carbonate system in the bay.
Continue reading ‘Long-term pH trends and spatiotemporal variability of the carbonate system in Jakarta Bay’Contrasting effects of river and erosion-derived inputs on Arctic Ocean acidification
Published 18 March 2026 Science ClosedTags: Arctic, biogeochemistry, chemistry, modeling, regionalmodeling
Although the Arctic Ocean is relatively small in volume, its extensive coastline delivers large quantities of terrigenous material from rivers and coastal erosion. As a result, the Arctic Ocean is impacted more strongly by terrigenous material than most other parts of the global ocean. Yet the effect of this material on carbon cycling and ocean acidification remains poorly quantified. In this study, we use an ocean biogeochemical model driven by observation-based estimates of terrigenous carbon, alkalinity, and nutrients to evaluate their contribution to the mean state, depth pattern, and seasonal cycle of ocean acidification, as measured by the aragonite saturation state. Riverine alkalinity generally mitigates acidification, whereas organic carbon from coastal erosion intensifies it. Nutrients from both sources mitigate ocean acidification at the surface by stimulating primary production, but intensify it at depth through subsequent remineralisation. Together, riverine and erosion-derived inputs account for about 20–40 % of the seasonal variability in the saturation state of the surface ocean. This amplification of the natural seasonal cycle is primarily caused by an increase in the summertime maximum of the saturation state. Terrigenous inputs also reduce the Arctic Ocean’s capacity to absorb atmospheric CO2 by 17–25 %. Accurately representing carbon and nutrient inputs from rivers and coastal erosion in biogeochemical models is therefore important for reliable assessments of ocean acidification, ecosystem health, and carbon budgets in the Arctic Ocean.
Continue reading ‘Contrasting effects of river and erosion-derived inputs on Arctic Ocean acidification’
