Archive for the 'Science' Category

Real-time acidification monitoring through Sofar buoy and SAMI-pH integration

Published 23 April 2026 Science Leave a Comment
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Ocean acidification (OA) impairs the ability of corals to build and maintain reef structures by reducing calcium carbonate deposition and accelerating the dissolution of existing frameworks. OA conditions can result from both natural pH fluctuations, driven by diel and seasonal variability in biological activity and water quality, and long-term increases in atmospheric CO2 absorption. Accurate characterization of OA requires precise, high-frequency time-series data, particularly in nearshore ecosystems where benthic community metabolism can cause rapid, localized shifts in carbonate chemistry. However, continuous, high-resolution pH monitoring remains challenging, and most existing technologies lack real-time feedback capabilities. Here, we present a real-time acidification monitoring system that integrates a Sofar Spotter buoy with a Sunburst SAMI-pH sensor. The system delivers continuous environmental data (benthic pH and temperature, surface temperature, wind, wave height, and barometric pressure) and sensor health diagnostics (battery levels and cellular connectivity status) to a public-facing dashboard. This system enables real-time access to high-frequency pH data and provides a modular and cost-effective alternative to larger, more complex platforms such as MAPCO2 buoys. Increased accessibility supports broader and more scalable monitoring efforts, supporting scientists, resource managers, and policymakers in tracking diel, seasonal, and long-term OA dynamics.

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Seawater acidification accelerates growth but hastens decline in batch cultures of the marine diatom Thalassiosira pseudonana

Published 22 April 2026 Science Leave a Comment
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Diatoms are characterized by rapid cell division and a high capacity to adapt to environmental variability, and some species can form blooms when environmental conditions are favorable. Previous studies have largely focused on the bloom development phase, during which biomass accumulates rapidly, whereas the decline phase-despite its critical role in carbon export and microbial loop dynamics-has received far less attention. Here, we tracked changes in cell density and inorganic carbon utilization characteristics throughout the entire course of a simulated Thalassiosira pseudonana bloom under ambient (420 μatm) and elevated pCO2 (1000 μatm) conditions. Inhibitors of carbonic anhydrase and direct bicarbonate transporters were applied to investigate the characteristics of inorganic carbon utilization. The relationship between photosynthetic rate and inorganic carbon concentration was measured to assess inorganic carbon affinity. The simulated T. pseudonana bloom was characterized by rapid cell density accumulation, reaching a peak within 10 days, followed by a rapid decline without a distinct stationary phase. As the bloom progressed, photosynthetic rate and the maximum quantum yield of photosystem II declined, whereas the inorganic carbon affinity increased. Elevated CO2 enhanced growth and maximum quantum yield during the acceleration phase but resulted in an 86% higher fitted death rate during the decline phase. Regarding the relationship between photosynthetic rate and dissolved inorganic carbon concentration, elevated CO2 increased the maximum photosynthetic rate and half-saturation constant only during the acceleration phase. Collectively, these results indicate that seawater acidification can influence both biomass accumulation and decline intensity in diatom blooms, with potential consequences for carbon sequestration and its redistribution among biogeochemical pools.

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Ocean acidification induces neuronal hyperexcitation and anxiety-like behaviour in marine medaka via ASIC activation

Published 21 April 2026 Science Leave a Comment
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Ocean acidification presents a significant threat to marine life, yet its neurobiological mechanisms remain poorly understood. This study examined how acid-sensing ion channels (ASICs) mediate neuronal excitability and anxiety-like behaviour in marine medaka (Oryzias melastigma) under elevated CO2 concentrations (1000 and 1900 ppm). Transcriptomics revealed early upregulation of asic1a (4 days), while RT-qPCR demonstrated increased asic1a, asic1b, asic2 and asic4a (7 days), with only asic1a sustained at 30 days. Immunofluorescence confirmed heightened Asic2 in emotion-processing brain regions following acidification. Transmission electron microscopy unveiled distinct ultrastructural alterations: widened synaptic clefts, thinned postsynaptic densities, and decreased mitochondrial aspect ratios. Mitochondrial membrane potential assays revealed a reduction in membrane potential in response to acidification. Electrophysiological recordings showed increased neuronal firing count in the dorsolateral telencephalon under acidification, behavioural assessments revealed significant anxiety-like phenotypes, effects that were fully rescued by ASIC inhibition. These results indicated that temporal specificity in ASIC subtype expression in acidification response. The interplay of synaptic and mitochondrial dysfunction, neuronal hyperexcitability, and behavioural alterations suggested acidification impaired both synaptic transmission efficiency and mitochondrial function, destabilizing neural circuits. This study systematically elucidates the neurotoxic effects of ocean acidification on marine fish, providing critical scientific evidence for predicting the ecological impacts of climate change on marine organisms.

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Decadal shifts in hypoxia and acidification reveal changing anthropogenic pressures on bottom waters of a coastal shelf

Published 20 April 2026 Science Leave a Comment
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Coastal systems provide habitat that sustains valuable shellfisheries but are subject to dissolved oxygen (DO) and/or carbonate chemistry impairment from anthropogenic pressures such as eutrophication and increasingly, climate change. Although extreme events can have disproportional negative ecological impacts, their ephemeral nature and a lack of baseline monitoring data make them challenging to characterize. Through assessments of historical records and a series of modern-day cruises, this study documented the magnitude and extent of summer hypoxia and acidification in the coastal shelf bottom waters of an urban shelf ecosystem, the New York Bight, before and during a devastating hypoxic event in 1976 and at present. In 1974, the most severe DO (2.39 mg L−1) and carbonate chemistry [pHN: 7.47; aragonite saturation state (ΩAr): 0.45] conditions occurred as a halo around a now derelict sewage disposal site, while averaging 4.43 mg L−1 (DO), 7.84 (pH), and 1.25 (ΩAr) across the region that August. During the mass mortality event of 1976, extremely low DO (< 1 mg L−1), pHN (< 7.5), and ΩAr (< 0.5) levels were observed across bottom waters during summer. Comparisons of modern subsurface chemistry to that of 1974—a year with ocean dumping but no mass mortality—indicated increases in bottom water DO, with evidence to suggest that ocean acidification has dampened the concomitant increases in ΩAr over the intervening half-century. This study highlights the impacts of ocean dumping and the threat of ocean acidification to systems that are experiencing or recovering from coastal hypoxia.

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Nonlinear responses of phytoplankton size, diversity, and chlorophyll a to environmental forcing along the Yellow Sea

Published 20 April 2026 Science Leave a Comment
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Highlights

  • Miniaturization coincides with reduced species diversity and elevated chlorophyll a.
  • Declining pH and reduced dissolved inorganic nitrogen are key drivers for smaller cells.
  • Salinity, dissolved oxygen and cooling jointly reshape phytoplankton community structure.

Abstract

Phytoplankton are tiny drifting photosynthetic organisms that support marine food webs and help control the global carbon cycle. However, it remains unclear how ongoing environmental changes are altering their cell size, species diversity, and chlorophyll a concentration in coastal seas. In this study, we investigated changes in phytoplankton cell size, species diversity, and chlorophyll a concentration along the Yellow Sea coast of China from 2021 to 2024, based on fourteen research cruises conducted at twenty-six coastal stations. We then employed statistical models to explore how individual and combined environmental factors were related to those biological features. We observed a clear shift to predominance of smaller cells, a reduction in species diversity, and an increase in chlorophyll a concentration. pH and reduced dissolved inorganic nitrogen were strongly associated with smaller cell size, while higher salinity and higher oxygen were associated with lower diversity. Lower surface water temperature and higher dissolved oxygen were associated with higher chlorophyll a concentrations. Overall, our findings suggest that interacting changes in pH, nutrient supply, temperature, salinity, and oxygen are associated with a simpler phytoplankton community structure, smaller mean cell size, and higher biomass levels in the Yellow Sea coastal region, with potential consequences for local food webs and carbon cycling.

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Effects of ocean acidification on the growth, shell integrity, and vulnerability to thermal stress and predation in Pacific oysters (Magallana gigas), and bay mussels (Mytilus spp.)

Published 17 April 2026 Science Leave a Comment
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The ocean is absorbing approximately one third of the anthropogenic carbon dioxide (CO₂) emissions to the atmosphere. As a result, the pH of the ocean is declining steadily, a phenomenon known as ocean acidification (OA). This decline in pH and the associated reductions in calcium carbonate saturation states of the water can have widespread consequences for marine life, particularly to calcifying organisms. In this thesis, I aim to understand the effects of OA on the growth, shell integrity, and susceptibility to secondary stressors like heatwaves or predation, of two important shellfish species in British Columbia, Pacific oysters (Magallana gigas) and bay mussels (Mytilus spp.). I also aim to identify potential tipping points beyond which the biological responses of these shellfish to OA rapidly become more pronounced. I reared oysters and mussels in experimental mesocosms, in four pCO₂ treatments for eight-weeks to determine growth. I subsequently exposed these OA-acclimated animals to a secondary stressor by simulating heatwave conditions to assess thermal tolerance, and by introducing a predatory sea star to assess vulnerability to predation. Finally, shell condition was visually assessed, and shells were mechanically crushed to determine integrity. I found that OA decreased the growth of both oysters and mussels. No tipping point was observed for oyster growth, but reduced growth only emerged at the highest levels of OA in mussels. Sensitivity to atmospheric warming was not increased after exposure to acidic conditions for either species, although oysters had a considerably higher thermal tolerance than mussels. Mussel vulnerability to predation did increase, although the relationship was complex and depended on predator size. OA negatively affected shell strength, and possible tipping points emerged for this response metric in both species. Overall, OA was shown to negatively affect both species, but patterns of effect and the presence of potential tipping points depended on the species and the response metric. Understanding how these ecologically and commercially important bivalves are responding to OA is important for understanding how changing ocean chemistry will affect marine ecosystems, and to inform aquaculture managers on mitigation strategies.

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Synergistic effects of ocean acidification and thermal stress on shell biomineralization and parasitism in the white clam Leukoma asperrima (Bivalvia: Veneridae)

Published 17 April 2026 Science Leave a Comment
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Ocean acidification (OA) and global warming are fundamentally altering the biomineralization processes of calcifying marine organisms. This study evaluates shell malformations and parasitism in the white clam Leukoma asperrima at Bique Beach, Panama, from December 2024 to November 2025. Environmental parameters (pH, temperature) were monitored monthly across two sampling stations (n=1100). Results indicate that 13.6% of the population exhibited shell malformations, and 6.3% were parasitized by the pea crab Pinnotheres pisum. A strong positive correlation was found between pH and healthy individuals (r=0.97, p<0.001), whereas critical pH levels (min. 5.75) were associated with increased shell fragility and dissolution. Despite thermal tolerance observed up to 35.7°C, the synergistic effect of OA and local stressors compromises the structural integrity of L. asperrima, threatening the sustainability of this socio-economic resource in the Tropical Eastern Pacific.

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Quantifying the role of land-based inputs on coastal ocean acidification from a tropical semi-arid region

Published 15 April 2026 Science Leave a Comment
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The land-based inputs in the form of river discharge, wastewater runoff, and submarine groundwater discharge (SGD) are among the major land-based natural pathways for the Coastal Ocean Acidification (COA). This study evaluates the direct influence of these land-based drivers, along with the aerosol deposition, and in-situ biogeochemical processes on COA along a highly populated tropical coastal area. The results suggest that spatially, aerosol deposition and in-situ biogeochemical processes in Kutch region are the major (72%) contributors to COA. In contrast, cumulative land runoff significantly (70%) contributes to COA in South Gujarat. Among these drivers, river water mixing causes the most significant pH decrease (0.093), while wastewater input results in the minimum pH drop (0.016) along the Gujarat coast. The seasonal nature of river water discharge, compared to continuous seepage of both fresh and recirculated (saline) SGD, highlights the role of SGD in COA. These findings align with the global studies represented SGD as one of the prominent land-based drivers for COA. Additionally, the low annual average pH (~ 7.954) along the Gujarat coast is attributed to the region’s macrotidal characteristics, which facilitate the release of sediment bound CO2, leading to a reduction in pH levels. The findings from the current study emphasis the need for comprehensive data collection on physicochemical and biogeochemical parameters to accurately assess COA dynamics and quantification of spatial and seasonal impacts of each driver along the India’s west coast.

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Future projections of compound events around the Main Hawaiian Islands

Published 15 April 2026 Science Leave a Comment
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The consequences of overlapping environmental stressors — referred to as compound events — may be more harmful to marine ecosystems than as individual stressors. Using recently conducted submesoscale-permitting future projections for the Main Hawaiian Islands, we present the first assessment of future compound events for Hawaiian waters. Our analysis focuses on surface and sub-surface heat-stress, ocean acidification, and low-oxygen events and is based on three different greenhouse gas emission scenarios. We show that a large fraction of ocean around Hawai‘i will be subject to compound events in the near future. However, the projected event characteristics such as duration and intensity vary substantially across the region suggesting that potential ecosystem impacts may differ over short distances. Our results reveal that these spatial differences are mainly driven by considerably different magnitudes of natural variability in ocean physics and chemistry across the domain driven by mesoscale processes, while anthropogenic trends exhibit only minor spatial differences. Our analysis demonstrates that small-scale tidal variability can significantly mitigate compound events in near-shore regions including some designated Marine Protected Areas. Overall, our findings highlight the need for high-resolution numerical models as well as for an extended observation network for robust future projections of local extreme events.

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Effects of pH on phytoplankton growth and diversity in a tropical coastal ay: an experimental study

Published 14 April 2026 Science Leave a Comment
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This research was intended to investigate the effects of reduced pH on the growth rates and diversity of phytoplankton in the coastal waters of Visakhapatnam in the Bay of Bengal. A short-term (six days) microcosm experiment was conducted with different pH conditions such as ambient (control-in situ pH), pH 8.0 (0.2 pH units drop from in situ pH) and pH 7.8 (0.4 pH units drop from in situ pH) corresponding to low, medium, and high future pH decline scenarios, respectively, to study the direct acidification impact on phytoplankton. The results revealed that the phytoplankton communities exhibit a wide range of responses including changes in growth rate during incubation. From the two treatments, a more pronounced response was observed in pH 7.8 conditions compared to the present pH scenario. Some phytoplankton communities exhibited positive growth responses to acidification, while others showed negative reactions in terms of biodiversity. Notably, Pseudo-nitzschia sp. became dominant during acidification, whereas larger centric diatoms such as Skeletonema spp., Chaetoceros spp., Rhizosolenia sp., Dactyliosolen fragilissimus, and Ditylum brightwellii showed no significant growth response to upcoming acidified conditions. This indicates a diverse array of physiological tolerance among the plankton species to environmental shifts. This study recommends further research to explore the impact of ocean acidification on other planktonic species in the coastal waters of Bay of Bengal.

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Coexpression among eastern oyster host and microbiome genes suggests coordinated regulation of calcifying fluid chemistry

Published 13 April 2026 Science Leave a Comment
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Significance

Oysters and many marine animals build shells by controlling the chemistry of extracellular fluids where minerals form, yet whether microbes in these fluids influence calcification remains unclear. We show that oysters maintain favorable conditions for mineral formation by regulating the carbonate chemistry of the shell-forming fluid, and that resident microbes respond to these changes by expressing nitrogen- and sulfur-cycling genes capable of altering pH, alkalinity, and carbonate availability. Many of these microbial transcripts were tightly correlated with oyster immune and signaling genes, suggesting that host and microbiome processes may be linked within the calcifying environment. These findings point to a host–microbiome interaction in the regulation of calcifying-fluid chemistry that directly links microbial activity to the carbonate chemistry underlying biomineralization.

Abstract

Marine animals that build shells, such as oysters, carefully regulate the chemistry of their internal calcifying fluids, but the molecular mechanisms behind this control, as well as whether microbes play a role in calcification, are poorly understood. To better understand oysters’ molecular mechanisms and the role of their calcifying-fluid microbes, we conducted experiments that simulated a tidal cycle, measured calcifying fluid pH and total dissolved inorganic carbon, and characterized host and microbial gene expression via transcriptomics. These experiments showed that calcifying fluid pH remained relatively stable throughout tidal pH fluctuations, with corresponding increases in oyster transcripts for ion transport and acid–base regulation. These data provide direct evidence that tidal fluctuations drive rapid changes in oyster calcifying fluid chemistry. Most surprisingly, increases in microbial transcripts related to nitrogen and sulfur cycling correlated to higher calcifying fluid DIC, and coexpression network analysis revealed patterns of gene expression that linked oyster immune and neural pathways to microbial redox processes, providing molecular evidence of potential host modulation of microbial metabolism. Together, these results reveal that oysters actively regulate their calcifying fluid pH over short timescales, and the endemic microbiome metabolic responses can yield metabolites that influence calcifying fluid pH, alkalinity, and ultimately calcification. These data offer a perspective on oyster physiological capacity and, most importantly, the potential role of microbes in oyster calcification. In light of ongoing changes in ocean pH and temperature, oysters provide a model for studying animal–microbial responses to environmental acidification and how their interactions may shape biomineralization.

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Unravelling marine benthic functioning shifts under ocean acidification

Published 10 April 2026 Science Closed
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Ocean acidification (OA) driven by increasing atmospheric CO2 is altering marine biodiversity. However, impacts of OA on ecosystem functioning at the community level, including calcification, primary production and nutrient uptake, remain largely unknown. Here, we conducted community transplant experiments at natural CO2 vents to assess how declining pH affects marine community species composition, biomass, and key ecosystem processes over time. Our results indicate that community shifts caused by declining pH lead to decreased biomass and calcification rates, while photosynthesis and nutrient uptake rates increased. By leveraging OA field model systems and in situ measurements of ecosystem functioning, this study provides critical insights into how OA-induced biodiversity loss reshapes the structure and functioning of temperate marine coastal ecosystems.

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Intracellular acid-base regulation mediates a trade-off between shell and somatic growth in a clam under ocean acidification

Published 9 April 2026 Science Closed
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Highlights

  • Clams actively regulate intracellular pH against ocean acidification via CAc
  • RNAi confirms CAc’s essential role in H+ efflux, measured by in vivo SIET.
  • A CAc-sAC-NKA network forms a conserved regulatory pathway for acid-base balance.
  • DEB model shows this pH defense sustains shell linear growth despite metabolic costs.

SUMMARY

Ocean acidification (OA) is predicted to threaten marine bivalves, casting them as passive victims of changing carbonate chemistry. Contributing to a revised understanding, we identified a conserved mechanism for acid-base regulation that supports intracellular resilience. Using the Manila clam Ruditapes philippinarum as a model, this study demonstrated that intracellular pH (pHi) homeostasis under elevated pCO2 was maintained through cytosolic carbonic anhydrase (CAc)-mediated H+ efflux. A causal link was established by combining in vivo scanning ion-selective electrode technique (SIET) with RNA interference (RNAi), where RpCAc knockdown suppressed H+ efflux and compromised pHi. A coordinated regulatory network involving CAc, soluble adenylyl cyclase (sAC), and Na+/K+-ATPase (NKA) was synergistically upregulated, suggesting an evolved adaptive pathway. Dynamic Energy Budget (DEB) modeling, calibrated with experimental data, revealed that this cellular compensation carries a high energetic cost, leading to a significant reallocation of resources: shell growth was maintained, but somatic growth was severely suppressed. These results elucidate a conserved cytoprotective mechanism that enables short-term tolerance of OA at a substantial somatic cost, redefining resilience to include energetic trade-offs.

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Climate-driven restructuring of phytoplankton productivity and community composition in the south-eastern Black Sea: insights from seasonal CO2-temperature manipulation experiments

Published 9 April 2026 Science Closed
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Semi-enclosed marine systems with low buffering capacity, such as the Black Sea, are expected to experience amplified impacts of ocean acidification and warming, yet experimental evidence on their combined short-term effects on natural phytoplankton assemblages remains limited. Here, we present a seasonally resolved one-year study (four experiments conducted between 2022 and 2023) based on 48 h short-term microcosm incubation experiments using natural phytoplankton communities collected from coastal and offshore stations in the south-eastern Black Sea. CO2 concentrations (360, 600, and 760 ppm) and temperature (ambient and +3 °C) were manipulated to examine short-term physiological and compositional responses under projected climate scenarios. We hypothesised that CO2 and warming would exert both independent and interactive effects on short-term particulate organic carbon production (14C uptake rates) and relative community composition, with responses varying seasonally and being most pronounced during summer stratification.

Short-term particulate primary production increased by ∼22% and ∼36% at 600 and 760 ppm CO2, respectively (p<0.05), while warming provided an additional 14–22% enhancement depending on season, with significant CO2 × temperature interaction terms detected for total production (two-way ANOVA, p<0.05), indicating synergistic CO2–temperature effects. Warming and moderate CO2 enrichment were associated with increased relative contributions of nano- and picophytoplankton (by ∼6–10%), whereas high CO2 reduced the warming-driven shift toward smaller cells by maintaining microphytoplankton contributions ∼10–15% higher than in the warming-only treatment. Carbonate chemistry responded strongly to CO2 manipulation, with pH declining from in-situ values of 8.09–8.21 to 7.06–7.52 during incubations and minor reductions in total alkalinity, reflecting the weak buffering capacity of the system. Pigment composition and microscopy indicated short-term increases in dinoflagellate relative abundance (∼12–18%) and concurrent declines in diatom markers, accompanied by accelerated nitrate depletion and reduced nitrogen-to-phosphorus (N:P) ratios, consistent with enhanced nitrogen limitation.

Overall, these findings demonstrate pronounced short-term sensitivity of natural phytoplankton assemblages in the south-eastern Black Sea to combined CO2 and warming under controlled incubation conditions. Because these results derive from 48 h microcosm experiments, they represent short-term physiological and compositional responses rather than direct evidence of long-term ecosystem restructuring, yet the observed patterns suggest potential implications for trophic efficiency, harmful algal bloom development, and carbon cycling in this low-buffer, stratified basin under future climate forcing.

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Responses of reef fish populations to similar environmental changes across distant oceanic islands

Published 9 April 2026 Science Closed
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Oceanic islands are among the most remote and understudied regions of the planet, yet they harbour unique reef fish communities that are increasingly vulnerable to global environmental change. Because these islands are geographically isolated, their populations are often assumed to respond mainly to local environmental conditions. However, by analysing temporal patterns in oceanographic variables across two distant systems (3204 km apart) in the South Mid-Atlantic Ridge (both encompassed by marine protected areas—MPAs), we found that temporal alignment in environmental conditions was associated with coordinated shifts in counts of nine reef fish populations in each study area. Among the evaluated variables, pH emerged as the most influential factor. Despite the divergent responses among reef fishes, possibly reflecting differences in physiological plasticity, shared temporal patterns in pH appeared central to parallel population patterns observed across assemblages. Increases in sea surface height and chlorophyll-a played secondary roles, potentially benefiting some populations, although such effects may be transient. These results suggest that climate-driven convergence in environmental conditions can override geographic isolation, promoting similar biological responses that may reduce resilience and increase extinction risk. Given that both islands are legally protected, our findings highlight that even MPAs are not insulated from large-scale oceanographic stressors, underscoring the need for long-term monitoring and adaptative conservation strategies for remote reef systems.

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An interpretable machine learning approach for alkalinity reconstruction in the Mediterranean Sea

Published 9 April 2026 Science Closed
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Highlights

  • Genetic Programming provides interpretable alkalinity models for Mediterranean Sea.
  • Genetic Programming models capture typical alkalinity patterns and its finer-scale variability.
  • Genetic Programming matches or exceeds linear models while remaining interpretable.
  • Neural networks yield lowest errors but lack model transparency.

Abstract

Ocean acidification has significant impacts on marine ecosystems and human activities, and its understanding relies on an accurate characterization of the marine carbonate system, in which alkalinity plays a central role.

We propose a Machine Learning (ML) approach based on Genetic Programming (GP) to model alkalinity and apply this framework to the surface layers of the Mediterranean Sea. Our framework produces interpretable equations that capture alkalinity typical patterns and its finer-scale variability by inferring its relation with key physical and biogeochemical variables.

Results, supported by quantitative metrics and visual analyses, demonstrate that our method reliably reproduces the spatio-temporal variability of alkalinity with a high level of predictive accuracy when compared with in situ observations. Moreover, we use the derived alkalinity equations to produce gap-free 2D surface alkalinity maps using satellite data. The maps correctly capture spatial gradients, seasonal patterns, and riverine contributions, reinforcing the robustness of the proposed approach.

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Climate change influence on salinity, temperature, dissolved oxygen and pH in Biscayne Bay (Florida): two decades of observations (2001–2021)

Published 8 April 2026 Science Closed
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Highlights

  • Research Highlight 1: Biscayne Bay is transitioning from an estuarine to a more marine regime due to sea level rise.
  • Research Highlight 2: Salinity is increasing at canal mouths, with saltwater intrusion detected in bottom layers.
  • Research Highlight 3: Global warming has raised Bay water temperature, and the past decade has been the warmest on record.
  • Research Highlight 4: Ocean acidification is influencing the Bay.

Abstract

An evaluation of 20 years (2001-2021) of monthly data from a long-term monitoring program was performed to determine the temporal, seasonal and spatial changes in the distribution of salinity, temperature, dissolved oxygen, and pH, to identify the potential impacts of climate change on Biscayne Bay, the largest estuary on the Atlantic coast of Florida. Data were evaluated by decade, season, and zone. Decade 2 showed higher salinity in four of eight zones, along with saltwater intrusion in the bottom layer of some canals. The zones most influenced by the Atlantic Ocean did not show decadal salinity changes. In decade 2, the overall median temperature in-creased (+0.5◦C), with North Bay exhibiting the highest increase (+0.8◦C). In decade 2, dissolved oxygen was higher in four zones, while pH decreased in six zones, suggesting that ocean acidification is also influencing the Bay. Temperature, dissolved oxygen, and pH displayed pronounced seasonal patterns across zones. Collectively, these results suggest that sea level rise and climate change are gradually transforming Biscayne Bay from an estuarine system to one that is more marine in nature.

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Ocean acidification: the silent threat to marine biodiversity

Published 8 April 2026 Science Closed
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Ocean acidification (OA) is one of the quietest yet most profound changes unfolding in our seas. Caused mainly by the ocean’s absorption of excess carbon dioxide from the atmosphere, it steadily lowers seawater pH and depletes carbonate ions — the essential building blocks for shells, skeletons, and coral reefs. These chemical shifts ripple through marine ecosystems, weakening coral structures, slowing the growth of shellfish, disrupting plankton communities, and ultimately destabilising the food webs that sustain biodiversity and human livelihoods. Although OA is recognised as a global problem, its effects are not uniform. Some regions, particularly the Indian Ocean and other tropical waters, remain poorly studied despite being home to rich biodiversity and millions of people whose lives depend on healthy coastal ecosystems. This paper focuses on OA as a “silent” driver of biodiversity loss and addresses two major gaps: the lack of strong policy and governance integration, and the scarcity of regional data for Indian and tropical waters. To explore how OA is framed in global agreements such as the United Nations Convention on the Law of the Sea (UNCLOS) and the Paris Agreement, and examine its treatment in India’s environmental laws, including the Environment (Protection) Act, Coastal Regulation Zone rules, and the Biological Diversity Act. While these frameworks provide important protections, none directly target OA or mandate systematic monitoring. The shortage of long-term, high-resolution data on pH and carbonate chemistry in Indian waters makes it difficult to gauge the scale of the threat or design locally relevant solutions. The lack of species-specific studies in this region adds further uncertainty to impact predictions. This is mainly upon doctrinal studies. This study calls for integrating OA into national marine policies, creating dedicated monitoring networks in the Indian Ocean, and fostering interdisciplinary research that links chemical changes to ecological shifts and community livelihoods. Closing these gaps is vital not only for protecting marine biodiversity but also for ensuring food security and economic stability for coastal populations.

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Effects of upwelling-driven acidification and deoxygenation on the dissolved inorganic carbon system over the southeastern Arabian Sea shelf

Published 8 April 2026 Science Closed
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Highlights

  • Summer monsoon upwelling drives strong acidification and deoxygenation over the EAS shelf.
  • Non-upwelling DIC and TAlk variability is largely governed by conservative water-mass mixing.
  • Elevated nDIC35 during upwelling confirms DIC enrichment beyond salinity stratification alone.
  • AOU-nDIC35 coupling indicates respiratory amplification of upwelled CO2-rich source waters.
  • Reduced buffering and lower ΩCa–ΩAr increase seasonal chemical stress on shelf ecosystems.

Abstract

Repeated measurements of inorganic carbon system parameters over one year along two coastal transects (Kochi in the southern EAS and Mangalore in the central EAS) in the eastern Arabian Sea (EAS) reveal strong seasonal coupling between upwelling, deoxygenation, acidification, and inorganic carbon accumulation on the shelf. During the non-upwelling (oxic) period, the variability of dissolved inorganic carbon (DIC) concentrations and total alkalinity (TAlk) was governed predominantly by conservative water-mass mixing, particularly between low-salinity Bay of Bengal-derived waters and more saline Arabian Sea shelf waters, as demonstrated by the marked reduction in salinity normalised DIC (nDIC35) and TAlk (nTAlk35). In contrast, during the summer monsoon (June–September), coastal upwelling transported oxygen-poor, DIC-rich subsurface waters onto the shelf, leading to pronounced subsurface inorganic carbon enrichment, hypoxia, and acidification. Vertical profiles of nDIC35 showed that elevated inorganic carbon concentrations persisted even after removing salinity effects, increasing from ∼1950–2000 μmol kg−1 at the surface to >2100–2200 μmol kg−1 below ∼40 m. Nearshore surface waters during peak upwelling exhibited a strong offset between measured DIC and nDIC35, indicating localized freshwater dilution, but salinity-normalised values confirmed that the underlying carbon inventory remained high. Apparent oxygen utilisation (AOU) and nDIC35 were positively correlated, indicating that a substantial fraction of the residual DIC enrichment was associated with oxygen consumption, although this relationship reflects the combined imprint of DIC-rich upwelled source waters and subsequent microbial remineralisation within the stratified shelf system. Thus, carbon accumulation during the summer monsoon is best explained by a two-stage mechanism: (i) physical advection of CO2-rich, oxygen-deficient upwelled waters, followed by (ii) secondary amplification through local respiration. In contrast, TAlk exhibited much weaker non-conservative modification, and the elevated alkalinity generated under low-oxygen conditions was insufficient to counteract the strong DIC-driven reduction in carbonate-system buffering capacity, thereby increasing the system’s vulnerability to pCO2 build-up and acidification. Consequently, calcite and aragonite saturation states declined sharply during upwelling, with ΩCa and ΩAr falling to ∼2.5 and ∼ 1.5, respectively, when pCO2 exceeded 1000 μatm under severe oxygen depletion. The co-occurrence of hypoxia, acidification, and weakened carbonate buffering characterises the eastern Arabian Sea shelf as a highly dynamic natural laboratory for understanding multi-stressor impacts on coastal biogeochemistry and ecosystem vulnerability.

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Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea

Published 7 April 2026 Science Closed
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The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.

Continue reading ‘Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea’

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