Posts Tagged 'laboratory'

Ocean acidification has little effect on the biochemical composition of the coccolithophore Emiliania huxleyi

Owing to the hierarchical organization of biology, from genomes over transcriptomes and proteomes down to metabolomes, there is continuous debate about the extent to which data and interpretations derived from one level, e.g. the transcriptome, are in agreement with other levels, e.g. the metabolome. Here, we tested the effect of ocean acidification (OA; 400 vs. 1000 μatm CO2) and its modulation by light intensity (50 vs. 300 μmol photons m-2 s-1) on the biomass composition (represented by 75 key metabolites) of diploid and haploid life-cycle stages of the coccolithophore Emiliania huxleyi (RCC1216 and RCC1217) and compared these data with interpretations from previous physiological and gene expression screenings. The metabolite patterns showed minor responses to OA in both life-cycle stages. Whereas previous gene expression analyses suggested that the observed increased biomass buildup derived from lipid and carbohydrate storage, this dataset suggests that OA slightly increases overall biomass of cells, but does not significantly alter their metabolite composition. Generally, light was shown to be a more dominant driver of metabolite composition than OA, increasing the relative abundances of amino acids, mannitol and storage lipids, and shifting pigment contents to accommodate increased irradiance levels. The diploid stage was shown to contain vastly more osmolytes and mannitol than the haploid stage, which in turn had a higher relative content of amino acids, especially aromatic ones. Besides the differences between the investigated cell types and the general effects on biomass buildup, our analyses indicate that OA imposes only negligible effects on E. huxleyi´s biomass composition.

Continue reading ‘Ocean acidification has little effect on the biochemical composition of the coccolithophore Emiliania huxleyi’

Future CO2-induced ocean acidification enhances resilience of a green tide alga to low-salinity stress

To understand how Ulva species might respond to salinity stress during future ocean acidification we cultured a green tide alga Ulva linza at various salinities (control salinity, 30 PSU; medium salinity, 20 PSU; low salinity, 10 PSU) and CO2 concentrations (400 and 1000 ppmv) for over 30 days. The results showed that, under the low salinity conditions, the thalli could not complete its whole life cycle. The specific growth rate (SGR) of juvenile thalli decreased significantly with reduced salinity but increased with a rise in CO2. Compared to the control, medium salinity also decreased the SGR of adult thalli at low CO2 but did not affect it at high CO2. Similar patterns were also found in relative electron transport rate (rETR), non-photochemical quenching, saturating irradiance, and Chl b content. Although medium salinity reduced net photosynthetic rate and maximum rETR at each CO2 level, these negative effects were significantly alleviated at high CO2 levels. In addition, nitrate reductase activity was reduced by medium salinity but enhanced by high CO2. These findings indicate that future ocean acidification would enhance U. linza’s tolerance to low salinity stress and may thus facilitate the occurrence of green tides dominated by U. linza.

Continue reading ‘Future CO2-induced ocean acidification enhances resilience of a green tide alga to low-salinity stress’

Cryptic genetic variation underpins rapid adaptation to ocean acidification

Global climate change has intensified the need to assess the capacity for natural populations to adapt to abrupt shifts in the environment. Reductions in seawater pH constitute a conspicuous stressor associated with increasing atmospheric carbon dioxide that is affecting ecosystems throughout the world’s oceans. Here, we quantify the phenotypic and genetic modifications associated with rapid adaptation to reduced seawater pH in the marine mussel, Mytilus galloprovincialis. We reared a genetically diverse larval population in ambient and extreme low pH conditions (pHT 8.1 and 7.4) and tracked changes in the larval size and allele frequency distributions through settlement. Additionally, we separated larvae by size to link a fitness-related trait to its underlying genetic background in each treatment. Both phenotypic and genetic data show that M. galloprovincialis can evolve in response to a decrease in seawater pH. This process is polygenic and characterized by genotype-environment interactions, suggesting the role of cryptic genetic variation in adaptation to future climate change. Holistically, this work provides insight into the processes underpinning rapid evolution, and demonstrates the importance of maintaining standing variation within natural populations to bolster species’ adaptive capacity as global change progresses.

Continue reading ‘Cryptic genetic variation underpins rapid adaptation to ocean acidification’

Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas

Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterial
biodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pH
manipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification

Continue reading ‘Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas’

Comparison of larval development in domesticated and naturalized stocks of the Pacific oyster Crassostrea gigas exposed to high pCO2 conditions

Ocean acidification (OA) has had significant negative effects on oyster populations on the west coast of North America over the past decade. Many studies have focused on the physiological challenges experienced by young oyster larvae in high pCO2/low pH seawater with reduced aragonite saturation state (Ωarag), which is characteristic of OA. Relatively few, by contrast, have evaluated these impacts upon fitness traits across multiple larval stages and between discrete oyster populations. In this study, we conducted 2 replicated experiments, in 2015 and 2016, using larvae from naturalized ‘wild’ and selectively bred stocks of the Pacific oyster Crassostrea gigas from the US Pacific Northwest and reared them in ambient (~400 µatm) or high (~1600 µatm) pCO2 seawater from fertilization through final metamorphosis to juvenile ‘spat.’ In each year, high pCO2 seawater inhibited early larval development and affected the timing, but not the magnitude, of mortality during this stage. The effects of acidified seawater on metamorphosis of pediveligers to spat were variable between years, with no effect of seawater pCO2 in the first experiment but a ~42% reduction in spat in the second. Despite this variability, larvae from selectively bred oysters produced, on average, more (+ 55 and 37%) and larger (+ 5 and 23%) spat in ambient and high pCO2 seawater, respectively. These findings highlight the variable and stage-specific sensitivity of larval oysters to acidified seawater and the influence that genetic factors have in determining the larval performance of C. gigas exposed to high pCO2 seawater.

Continue reading ‘Comparison of larval development in domesticated and naturalized stocks of the Pacific oyster Crassostrea gigas exposed to high pCO2 conditions’

Testing the adaptive potential of yellowtail kingfish to ocean warming and acidification

Estimating the heritability and genotype by environment (GxE) interactions of performance-related traits (e.g., growth, survival, reproduction) under future ocean conditions is necessary for inferring the adaptive potential of marine species to climate change. To date, no studies have used quantitative genetics techniques to test the adaptive potential of large pelagic fishes to the combined effects of elevated water temperature and ocean acidification. We used an experimental approach to test for heritability and GxE interactions in morphological traits of juvenile yellowtail kingfish, Seriola lalandi, under current-day and predicted future ocean conditions. We also tracked the fate of genetic diversity among treatments over the experimental period to test for selection favoring some genotypes over others under elevated temperature and CO2. Specifically, we reared kingfish to 21 days post hatching (dph) in a fully crossed 2 × 2 experimental design comprising current-day average summer temperature (21°C) and seawater pCO2 (500 μatm CO2) and elevated temperature (25°C) and seawater pCO2 (1,000 μatm CO2). We sampled larvae and juveniles at 1, 11, and 21 dph and identified family of origin of each fish (1,942 in total) by DNA parentage analysis. The animal model was used to estimate heritability of morphological traits and test for GxE interactions among the experimental treatments at 21 dph. Elevated temperature, but not elevated CO2 affected all morphological traits. Weight, length and other morphological traits in juvenile yellowtail kingfish exhibited low but significant heritability under current day and elevated temperature. However, there were no measurable GxE interactions in morphological traits between the two temperature treatments at 21 dph. Similarly, there was no detectable change in any of the measures of genetic diversity over the duration of the experiment. Nonetheless, one family exhibited differential survivorship between temperatures, declining in relative abundance between 1 and 21 dph at 21°C, but increasing in relative abundance between 1 and 21 dph at 25°C. This suggests that this family line could perform better under future warming than in current-day conditions. Our results provide the first preliminary evidence of the adaptive potential of a large pelagic fisheries species to future ocean conditions.

Continue reading ‘Testing the adaptive potential of yellowtail kingfish to ocean warming and acidification’

Calcite dissolution rates in seawater: lab vs. in-situ measurements and inhibition by organic matter


• Calcite dissolution in lab and in-situ exhibits the same dissolution mechanisms.

• In-situ dissolution rates are likely inhibited by dissolved organic carbon.

• Orthophosphate has no effect on seawater calcite dissolution rates from pH 5.5 to 7.5.

• Previous in-situ dissolution rates fall between bounds established by our measurements.

• Rate measurements suggest need to reevaluate marine carbonate system equilibria.


Ocean acidification from fossil fuel burning is lowering the mean global ocean saturation state (Ω = ), thus increasing the thermodynamic driving force for calcium carbonate minerals to dissolve. This dissolution process will eventually neutralize the input of anthropogenic CO2, but the relationship between Ω and calcite dissolution rates in seawater is still debated. Recent advances have also revealed that spectrophotometric measurements of seawater pHs, and therefore in-situ Ωs, are systematically lower than pHs/Ωs calculated from measurements of alkalinity (Alk) and total dissolved inorganic carbon (DIC). The calcite saturation horizon, defined as the depth in the water column where Ω = 1, therefore shifts by ~5–10% depending on the parameters used to calculate Ω. The “true” saturation horizon remains unknown. To resolve these issues, we developed a new in-situ reactor and measured dissolution rates of 13C-labeled inorganic calcite at four stations across a transect of the North Pacific Ocean. In-situ saturation was calculated using both Alk-DIC (Ω(Alk, DIC)) and Alk-pH (Ω(Alk, pH)) pairs. We compare in-situ dissolution rates with rates measured in filtered, poisoned, UV-treated seawater at 5 and 21 °C under laboratory conditions. We observe in-situ dissolution above Ω(Alk, DIC) = 1, but not above Ω(Alk, pH) = 1. We emphasize that marine carbonate system equilibria should be reevaluated and that care should be taken when using proxies calibrated to historical Ω(Alk, DIC). Our results further demonstrate that calcite dissolution rates are slower in-situ than in the lab by a factor of ~4, but that they each possess similar reaction orders (n) when fit to the empirical Rate = k(1-Ω)n equation. The reaction orders are n < 1 for 0.8 < Ω < 1 and n = 4.7 for 0 < Ω < 0.8, with the kink in rates at Ωcrit = 0.8 being consistent with a mechanistic transition from step edge retreat to homogenous etch pit formation. We reconcile the offset between lab and in-situ rates by dissolving calcite in the presence of elevated orthophosphate (20 μm) and dissolved organic carbon (DOC) concentrations, where DOC is in the form of oxalic acid (20 μm), gallic acid (20 μm), and d-glucose (100 μm). We find that soluble reactive phosphate has no effect on calcite dissolution rates from pH 5.5–7.5, but the addition of DOC in the form of d-glucose and oxalic acid slows laboratory dissolution rates to match in-situ observations, potentially by inhibiting the retreat rate of steps on the calcite surface. Our lab and in-situ rate data form an envelope around previous in-situ dissolution measurements and may be considered outer bounds for dissolution rates in low/high DOC waters. The lower bound (high DOC) is most realistic for particles formed in, and sinking out of, surface waters, and is described by R(mol cm-2 s-1) = 10–14.3±0.2(1-Ω)0.11±0.1 for 0.8 < Ω < 1, and R(mol cm-2 s-1) = 10–10.8±0.4(1-Ω)4.7±0.7 for 0 < Ω < 0.8. These rate equations are derived from in-situ measurements and may be readily implemented into marine geochemical models to describe water column calcite dissolution.

Continue reading ‘Calcite dissolution rates in seawater: lab vs. in-situ measurements and inhibition by organic matter’

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Ocean acidification in the IPCC AR5 WG II

OUP book