The response of coralline algae to cenozoic environmental change

Coralline algae, calcifying red algae of the orders Corallinales, Hapalidiales and Sporolithales, are important components of many marine ecosystems, providing stability and protection from high energy waves in coral reefs, and providing shelter, substrate and nutrients for many organisms across a range of marine environments. Corallines are thought to be amongst the most vulnerable marine organisms in the face of climate change, as their high-Mg calcite mineralogy makes them especially vulnerable to ocean acidification. Corallines also require light to perform photosynthesis and are therefore vulnerable to siliciclastic sedimentation which can reduce illumination and bury corallines. Lab based acidification experiments show most coralline species respond negatively to elevated CO2 conditions, but the nature and magnitude of effects vary between species, and the rate of experimental CO2 increase is much faster than natural rates, making it difficult to use experimental data to predict how corallines respond to acidification on time scales of thousands to millions of years. While most coralline groups are not directly affected by temperature changes, global warming can alter the hydrosphere, increasing precipitation intensity and therefore terrestrial runoff in some coastal areas. Increased runoff can directly lower illumination in the water column and can also cause phytoplankton blooms that significantly reduce illumination. The earth’s climate and ocean conditions have changed greatly throughout the Cenozoic, with significant effects on many marine organisms including corals, benthic foraminifera, bivalves, sponges, and many other groups. The response of coralline algae to Cenozoic climate change, however, has received less research attention despite their importance in marine ecosystems.

This dissertation uses the fossil record to assess how coralline algae responded to different types of Cenozoic environmental change at three different scales. Chapter 1 looks at coralline response to rapid warming, acidification and sediment influxduring the Paleocene-Eocene Thermal Maximum (PETM) in northeastern India and Tibet. The PETM is the largest hyperthermal of the Cenozoic, where a massive release of CO2 caused widespread ocean acidification and warming of ~5-8 °C over ~10,000 years. At both study locations, coralline abundance is high in the pre-PETM and remains high into the PETM onset. Corallines then disappear abruptly as carbonate sedimentation rapidly ends under heavy siliciclastic input. The results of this chapter suggest that coralline algae may be more tolerant of acidification, but less tolerant of sedimentation, than previously thought.

Chapter 2 uses the early Eocene Sierra Blanca Limestone in Santa Barbara County, California, as a case study for rhodolith bed construction in the early Eocene greenhouse. Elevated temperatures and CO2 in the early Eocene prevented rhodolith beds from developing in most areas, so the Sierra Blanca Limestone provides rare insight into the environmental conditions allowing a robust coralline deposit to form in a seemingly hostile ocean. The lithology, taxonomic assemblages, and characteristics of Sierra Blanca rhodoliths suggest they developed on an offshore uplifted block along an upwelling coastline, allowing rhodoliths to thrive in relatively cool water beyond the reach of siliciclastic sedimentation.

Chapter 3 examines what controls the partitioning of coralline algae into reef and non-reef habitats on carbonate platforms during the Paleogene and Neogene. Coral reefs are significantly impacted by climate change during this interval, but coralline algae are more resilient. Coralline algae occupy non-reef settings through the studied interval and their abundance in non-reef environments shows little variation. As coral reefs develop, corallines persist in non-reef environments and expand into reefs where they play a crucial role in cementing the framework. When coral reefs collapse, corallines do not take over reef building, but persist and even expand in non-reef settings, often constructing rhodolith beds that serve some of the same ecological roles as coral reefs.

Together, these chapters highlight the ability of coralline algae to adapt to changing environmental conditions despite their assumed vulnerability. The discrepancies between lab-based experiments and paleontological observations suggest that the rate of change is vitally important: corallines can adapt to even significant change if it occurs slowly enough but are less able to adapt to rapid environmental change.

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Coastal and marine ecosystems under climate change ecological and socio-environmental impacts

Coastal and marine systems are some of the most biologically productive and economically important systems on Earth, yet they are being compromised at an accelerating pace by climate change. Ocean warming, marine heatwaves, sea-level rise, ocean acidification and deoxygenation along with increasing extreme events are interacting to change the structure, function and resilience of ecosystems among coral reefs, mangroves seagrass meadows and salt marshes. Although effort has been devoted to understanding individual ecosystem effects of climatic change, we know less about comparative mechanistic synthesis and cross-ecosystem vulnerability trajectories. This synthesis explores recent understanding of the biophysical determinants of ecosystem decline, with particular reference to thresholds, regime shifts and feedbacks that limit capacity to adapt. We explore different sensitivities among these biogenic coastal systems, and explain why coral reefs are confronted with sharp thermal and carbonate chemistry thresholds, while mangroves and tidal wetlands have threshold-based resilience contingent on sediment supply and geomorphologic setting. Beyond ecological effects, we compile social–environmental responses including fishery reduction, coastal defense loss and blue carbon release, and rising human vulnerability especially in small island and developing coastal regions. The review also examines ecosystem-based adaptation and nature-based solutions, considering their co-benefits and implementation challenges in a high-emission world. By synthesizing climate drivers, ecosystem thresholds, and social–ecological tipping points within a unified conceptual framework, this review integrates mechanisms of change and alternative stable-state transitions to improve understanding of coastal ecosystem resilience under accelerating climate change.

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Natural environmental drivers of seagrass degradation: a global systematic review with implications for Indonesia

Highlights

  • Thermal stress was the most studied natural driver of seagrass decline.
  • Study frequency reflects research effort, not ecological importance.
  • Most multi-stressor studies assessed only two interacting drivers.
  • Warming–acidification effects varied among species and exposure contexts.
  • Indonesia remains underrepresented in long-term seagrass research.

Abstract

Seagrass ecosystems are exposed to natural environmental variability and climate-modulated extremes that can interact with anthropogenic pressures and accelerate ecological decline. This systematic review synthesized 60 peer-reviewed publications published between 2010 and 2025 to examine how temperature and marine heatwaves, ocean acidification and pH, salinity, drought and flooding, hydrodynamics, sea-level change, turbidity and light limitation, sediment conditions, and oxygen availability affect seagrass ecosystems. Thermal variables were the most frequently investigated category; however, publication frequency was treated as an indicator of research effort rather than a ranking of ecological importance. Experimental and field evidence showed that warming and marine heatwaves often reduce growth, photosynthetic performance, biomass, and recovery, although outcomes depend on species, exposure duration, light, nutrients, and prior stress history. Evidence for warming–acidification interactions was contrasting: acidification impaired plant performance during thermal stress in some studies, whereas enhanced inorganic carbon availability supported biomass or carbon metabolism in others. Most multi-stressor experiments evaluated only two drivers, and relatively few examined three or more simultaneous or successive stressors. The most commonly reported ecosystem consequences included habitat contraction, canopy and biomass loss, physiological impairment, altered carbon and nutrient cycling, sediment destabilization, community reorganization, and reduced resilience. Geographic evidence remained concentrated in Europe, the Mediterranean, Australia, China, and North America. Indonesia and much of Southeast Asia were comparatively underrepresented despite high seagrass diversity and documented declines associated with interacting environmental change. Future research should prioritize standardized long-term monitoring and multifactorial experiments that distinguish research frequency from ecological effect and support regionally calibrated risk assessment.

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Brood chamber carbonate chemistry in the oyster Ostrea edulis is dynamically shaped by warming, acidification, and ventilation

Brooding organisms can modify the chemical environment experienced by developing offspring, potentially altering their exposure to climate change. In marine systems, however, the carbonate chemistry of brood chambers, and the mechanisms governing it, remain poorly resolved. Here, we combine high-resolution pH and CO2 measurements of the empty brood chamber (i.e., mantle cavity above gills) in the European flat oyster (Ostrea edulis) while also tracking valve gape to quantify how warming, ocean acidification, and ventilation interact to shape the internal environment experienced by larvae during incubation. Brood chamber pH was consistently lower than that of the surrounding seawater and responded to external conditions in a state-dependent manner governed by ventilation and respiration. When oysters were actively ventilating, brood chamber chemistry tracked ambient seawater with a persistent offset, whereas valve closure led to rapid CO2 accumulation and pronounced declines in pH. These dynamics generated highly variable and behaviorally mediated exposure regimes, in which metabolic processes distorted ambient chemical signals over short timescales. Paired pH and CO2 measurements provided preliminary constraints on aragonite saturation state (Ωar), revealing that brood chambers can remain undersaturated (Ωar < 1) for prolonged periods even in ventilating oysters and while overlying seawater remains favorable. Together, these results demonstrate that brood chambers function as dynamic microenvironments in which larval exposure to ocean acidification is governed not only by external conditions, but also by behavior. Because warming enhances metabolic CO2 production and intensifies acidification within the chamber, future climate change is likely to amplify both the magnitude and variability of larval exposure. These findings help explain the apparent resilience of brooding species to ocean acidification, while also highlighting potential limits as environmental conditions move beyond historical bounds.

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Ocean acidification and nanoplastics disrupt mussel calcification in synergy: a multi-omics analysis

Highlights

  • Ocean acidification disrupts calcium homeostasis in the mantle of mussels.
  • Ocean acidification and N-NPs together intensify the inhibition of calcification.
  • Surface charge determines distinct, mechanism-specific response pathways.
  • Both omics reveal key roles for calcium transport, CA, and ECM synthesis.

Abstract

Ocean acidification (OA) and nanoplastics (NPs) increasingly co-occur in coastal ecosystems, yet their combined mechanistic impacts on calcifying invertebrates remain poorly resolved. Here, the mussel Mytilus coruscus was exposed for 30 days to factorial combinations of OA (pH 7.7 vs 8.1), surface-modified polystyrene NPs at a concentration of 100 μg/L (positively and negatively charged), and experimental shell damage to assess effects on shell repair, ion homeostasis, and energy metabolism. OA reduced shell repair quality by thinning repair layers, increasing porosity, and lowering calcium content, effects that were further enhanced by co-exposure to NPs, particularly negatively charged particles. OA and NPs jointly altered Ca2+ and Mg2+ levels, alkaline phosphatase activity, Ca2+Mg2+-ATPase activity, and key indicators of energy metabolism, including ATP content and cellular energy allocation. Transcriptomic and proteomic analyses revealed enrichment of ion transport, extracellular matrix, TGF-β signaling and other pathways, with divergent patterns linked to NPs surface charge. Together, these results suggest that nanoplastic surface charge under OA may impair mussel shell repair through associated alterations in ion homeostasis and energy metabolism. These findings highlight that particle surface properties shape how organisms respond to combined environmental stressors in acidifying marine environments.

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12-year-old Connecticut student, Raji Doshi designed a system combining algae with natural calcium that blocks ocean acidification and protects marine ecosystems

A 12-year-old student from Connecticut has designed a science project aimed at tackling one of the ocean’s most persistent problems: rising acidity. Raji Doshi’s system, which pairs algae with natural calcium buffers, has made her a finalist in the 2026 3M Young Scientist Challenge.

A problem playing out in every ocean

Ocean acidification is driven by the same process everywhere: the world’s oceans absorb a large share of the carbon dioxide humans release into the atmosphere. As that CO₂ dissolves into seawater, it lowers the water’s pH and makes it progressively more acidic. Over time, this makes it harder for corals, shellfish and other marine organisms to build and maintain their shells and skeletons, threatening the wider food chain that depends on them. Scientists have flagged the trend as one of the more serious long-term risks facing marine ecosystems, alongside warming waters and habitat loss.

Two natural processes, one system

Rather than pursuing a single intervention, Raji’s project looks at what happens when two separate natural mechanisms are combined. The first is algae’s own photosynthesis, through which it absorbs carbon dioxide from the surrounding water as it grows. The second is the buffering effect of natural calcium, specifically aragonite, which raises seawater’s alkalinity and helps counteract the acidifying effect of dissolved CO₂.

Individually, both processes are well documented in marine chemistry. Raji’s project, according to her profile on the Young Scientist Lab website, explores whether deploying them together produces a more effective result than either would alone, essentially attacking the problem from two directions: reducing the CO₂ entering the water while simultaneously buffering the acidity that’s already there.

It is worth noting that this remains a student research proposal rather than a tested or commercially deployed technology. Still, it reflects the kind of cross-disciplinary thinking, drawing on both biology and chemistry, that judges in youth science competitions tend to reward.

From classroom idea to national finalist

The 3M Young Scientist Challenge is a US-based competition that identifies young innovators working on solutions to significant global issues, and being named a finalist is itself a notable achievement given the scale of entries the competition typically draws. Finalists don’t just submit a written proposal; they get mentorship from working scientists to help refine their projects before presenting to a judging panel for a shot at the top prize.

Raji’s project has already drawn attention to how younger students are engaging with complex environmental science, and to the fact that meaningful ideas for protecting marine ecosystems aren’t limited to research labs or universities.

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Uncovering hidden and cumulative impacts of construction life cycle processes on planetary boundaries through Forgotten Effects Theory

This study applies the Forgotten Effects Theory (FET), a fuzzy-logic-based modelling framework, to analyse how construction life cycle processes generate direct and indirect pressures on multiple planetary boundaries. The approach captures multistage and nonlinear causal relationships derived from expert-based incidence matrices. Results show that mineral extraction, material distribution, and waste disposal strongly influence ocean acidification; construction operations and building use affect biosphere integrity; material production drives land-use change; and demolition contributes to climate change. The analysis revealed substantial hidden effects: the influence of mineral extraction on ocean acidification increased from 0.4 to 0.9 when material production was included as a mediator; the relationship between building use and biosphere integrity increased from 0 to 0.8 through indirect pathways; and the influence of demolition on climate change increased from 0 to 0.8 through waste-disposal mediation. A ±10% sensitivity analysis confirmed the stability of the main incidence hierarchy, with changes below 0.05 for the most relevant coefficients. These findings demonstrate that indirect (“forgotten”) effects can be as influential as direct impacts, significantly intensifying pressures across planetary boundaries. The construction sector is therefore characterised as a cumulative and interconnected system in which impacts propagate and reinforce each other across life cycle stages. These results highlight the limitations of silo-based environmental assessments and underscore the need for integrated, life cycle-oriented sustainability strategies. Policies prioritising upstream interventions, material efficiency and reduced demolition can generate broader systemic benefits. The study demonstrates the potential of FET as a transparent and reproducible modelling approach for linking local construction decisions with global environmental processes, supporting more integrated circular economy strategies and contributing to the achievement of Sustainable Development Goals 11, 12 and 13.

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Long term monitoring of coral reef fish populations under increasing ocean temperature and acidification stress

Coral reefs are especially sensitive to ocean warming and acidification caused by climate change and can have a major impact on reef-associated fish species and reef stability. This study analyzes the diversity of coral reef fishes over time using data from the National Coral Reef Monitoring Program (NCRMP) of NOAA from the year 2014 to 2024 from the Hawaiian Archipelago. The impacts of environmental factors such as sea surface temperature, ocean pH, and coral cover were evaluated on fish population structure. Shannon Diversity Index as the main statistical method to quantify the changes in biodiversity between monitoring years. The mean sea surface temperature (MST) ranged from 26.8°C in 2014 to 29.1°C in 2024, with a steady increase over the years, whereas the mean pH decreased from 8.12 to 7.95 over the years. During the same time frame, there was significant loss of coral cover, from 62% to 36%. The Shannon Diversity Index was then found to have decreased from 3.45 to 2.51, representing a loss of some 27.2% of biodiversity. The results indicate that the diversity of coral reef fishes is negatively correlated with environmental stress. Fish functional groups were further simplified, with habitat specialist fishes being more affected than generalist fishes under climate stress. The rising temperature and acidification of the oceans are important factors in the decline of coral reef fish. The continued monitoring and adaptive conservation strategies will be critical to ensure that reef biodiversity will persist into the future under different climate change scenarios.

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Chapter 23 – Climate change: effects and implications

The coastal zone is an epicenter of climate change impacts, including rising sea levels, an increase in sea temperature, and a decrease in salinity through precipitation and ice melt. In addition, changes in carbon chemistry will result in the “acidification” of seawater. Direct physiological effects of extreme weather events will likely cause some sub-optimal changes in Manila clam abundance, with implications for aquaculture production, especially in warmer waters such as the Adriatic and the west coast of the Korean penisula. Indirect effects on food and predator species and synergistic impacts of multiple pollutants may also prove influential. Currently predicted acidification will, in itself, be within the tolerances of R. philippinarum, although it may contribute to increased oxidative stress and energetic demand, especially when in combination with other challenges. Overall, while Manila clam distributions, locally, regionally, and globally, will adjust, the species is considered resilient within temperate conditions and is expected to extend its global distribution northwards in Alaska, Europe, and probably Siberia.

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Variability of carbon chemistry at the marine protected area of Savaia Village, Upolu Island, Samoa

The Pacific Small Island Developing States (Pacific SIDS) are at the forefront of climate change impacts, yet these effects remain understudied and therefore poorly understood. Ocean acidification (OA) research in Samoa is in its infancy, with a new OA project established to monitor seawater carbon chemistry in coastal ecosystems. The study measured seawater carbon chemistry—including pH, dissolved carbon dioxide and total alkalinity—within the marine protected area (MPA) of Savaia, Lefaga, on Upolu Island, Samoa. Sampling was conducted over twelve months at four locations within the MPA (Site 1, Site 2, Site 3, Site 4), focusing on spatio-temporal variability in pH, temperature and total alkalinity. Measurements were obtained using water samples and an iSAMI pH sensor. The mean pH recorded was 8.06 ± 0.07, while the mean total alkalinity was 1955.1 ± 25 µmol∙kg−1, which is lower than the typical value of 2305 µmol∙kg−1 observed in tropical environments. This decline in total alkalinity and the corresponding low pH could be a potential source of acidification to downstream coastal ecosystems with potential implications for coral reefs, biodiversity and fishery livelihoods.

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Combined effect of ocean warming and acidification on the sea pen “Pennatula phosphorea”

Anthropogenic CO2 emissions are expected to increase ocean acidity and temperature over the coming century. Under the Shared Socioeconomic Pathway (SSP) 5–8.5 scenario, mean surface ocean pH is projected to decrease by approximately 0.39 units, while sea surface temperature is expected to rise by 2–4 °C between 2010 and 2100. Sea pens (Octocorallia) are important bioindicators of soft-sediment habitat quality and associated benthic communities; however, their responses to these stressors remain considerably less studied than those of their hexacoral counterparts.

This thesis investigates the individual and combined effects of ocean acidification and warming, based on SSP5–8.5 projections, on the sea pen Pennatula phosphorea (Linnaeus, 1758), collected from the Swedish Gullmarsfjord. During winter and summer 2025, four pH treatments (8.0, control; 7.8, present-day low value; 7.4, projected low value for 2100; and 7.0, extreme scenario) and four temperature treatments (7.7 °C, winter control; 14 °C, summer control; 17 °C, present-day high value; and 20 °C, projected high value for 2100) were assessed. Response variables included behavioural traits (colony burrowing, colony inflation, polyp opening and bioluminescence emission), survival, and bioluminescence substrate levels (coelenterazine concentration and maximum light intensity, Lmax). Three hypotheses were tested: (1) ocean acidification and warming would negatively affect all response variables, with stronger effects under combined exposure; (2) prolonged exposure would result in either progressive deterioration or acclimation of behavioural traits; and (3) larger individuals would be less affected by stressors than smaller individuals.

The effects of acidification and warming varied among response variables, seasons, and whether stressors were applied individually or in combination. Overall, pH 7.8 produced few significant effects, except on burrowing behaviour, whereas pH 7.4 and 7.0 generated effects ranging from negligible (p > 0.1) to highly significant (p < 0.01), generally with greater impacts at pH 7.0. Similarly, temperatures of 17 and 20 °C elicited responses ranging from negligible to highly significant, with the strongest effects observed at 20 °C for quantitative measures of bioluminescence substrates. Combined exposure generally amplified the observed effects, suggesting that tolerance to one stressor may be compromised by the presence of another. No consistent evidence of behavioural acclimation or progressive deterioration was detected over time. Contrary to the initial hypothesis, larger individuals appeared more susceptible to environmental stressors than smaller individuals.

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Ocean acidification is just one of five stressors dissolving shellfish from inside out

New mechanistic review shows warming, pollution, and pH compete for same ATP pool powering every shell

Photo: Dave Meckler/unsplash.com

A review published Monday in Frontiers in Marine Science is the first to map exactly which molecular components inside a shellfish shell each ocean stressor attacks — and to show why combining them produces damage no single-stressor model can predict. Ocean acidification suppresses one set of enzymes. Warming shunts cellular energy toward heat-shock proteins. Heavy metal contamination poisons crystal-growth sites through a different mechanism entirely. A common anti-inflammatory drug, at concentrations already detectable in urban coastal waters, destroys 99 percent of shellfish larvae in 96 hours when paired with even moderately acidified seawater. And all five stressors draw from the same limited pool of ATP — the cellular energy currency that powers shell construction. When they hit simultaneously, as they do in every real coastal environment, the damage can tip past any threshold the animal can compensate for.

The paper — authored by Wenxiao Guo, Hao Li, Dongfang Li, Peiyao Sun, and Ran Zhao of Shenzhen MSU-BIT University — synthesizes research covering literature through May 2026 across bivalves (oysters, mussels, clams, scallops) and gastropods (snails, abalone), the groups that form the commercial and ecological backbone of global shellfish aquaculture. Its central contribution is a conditional hierarchical response framework: a model linking ionoregulatory and acid-base disruptions at the molecular level to defects in crystal microstructure to compromised shell physical properties — while explicitly accounting for compensatory mechanisms, nonlinear thresholds, species-specific strategies, and life-stage-specific outcomes. For the aquaculture industry, the framework offers something more immediately actionable: a map of why current adaptation strategies, almost all oriented around single-stressor OA response, may be systematically underestimating the combined burden their animals are already carrying.

Shell Construction Is Precision Molecular Clockwork

To understand what each stressor breaks, it helps to understand what has to work.

Molluscan shells are built from calcium carbonate, which makes up more than 95 percent of their dry mass, plus a small but critical fraction of organic matrix — proteins, polysaccharides, and lipids that orchestrate how crystals form, stack, and align. At the center of the process is carbonic anhydrase (CA), an enzyme that converts carbon dioxide and water into bicarbonate ions — the raw material for calcium carbonate deposition. Another key protein, nacrein, simultaneously catalyzes bicarbonate availability and inhibits crystal overgrowth through a specialized repeat domain, giving the organism fine control over shell architecture. The shell matrix proteins Aspein and N16 govern crystal nucleation and orientation in the prismatic and nacreous layers respectively. A structural polysaccharide, chitin, provides the scaffold on which crystals nucleate and grow. Calcium ions reach the crystallization site via Ca²⁺-ATPase, an active transporter that requires ATP to run.

This is not a passive chemical precipitation process. It is a biologically orchestrated system with multiple interdependent molecular actors. When any one of them is disrupted, the effects propagate upward — from abnormal gene expression to defects in crystal microstructure to shells that are measurably softer, more porous, or structurally misshapen. The phylum Mollusca encompasses more than 70,000 species; the review focuses on bivalves and gastropods, which together form the commercial and ecological centerpiece of global shellfish systems.

What Makes Ocean Acidification Different From — and Worse With — Every Other Stressor

Ocean acidification (OA) operates through three simultaneous routes: it lowers the carbonate saturation of seawater, making it thermodynamically harder to deposit calcium carbonate; it acidifies body fluids, forcing animals to spend metabolic energy on acid-base regulation that would otherwise fund shell construction; and it directly suppresses the genes and enzymes that build shells.

The ocean has already absorbed enough anthropogenic CO₂ to lower average ocean pH by approximately 0.11 units from a preindustrial baseline of roughly 8.20. Model projections indicate a further drop of 0.3–0.4 pH units by 2100, with declines of up to 0.7 units possible by 2300. These global averages substantially understate regional variability in coastal and estuarine zones — precisely where most shellfish aquaculture occurs.

In the blue mussel Mytilus edulis, carbonic anhydrase activity remained stable at 550 µatm CO₂ but dropped significantly at 750 µatm. In the pearl oyster Pinctada fucata, shell hardness, calcium content, and total weight were unchanged at pH 8.10 and 7.70 but collapsed at pH 7.40, suggesting OA damage can arrive not as a gradual slide but as an abrupt deterioration once a critical saturation threshold is crossed. Some species show mechanical weakening even before carbonate saturation falls below the dissolution threshold: in the thick-shelled mussel Mytilus coruscus, both whole-shell compressive strength and shell closure force fell significantly at pH 7.80 — well above the level at which aragonite becomes thermodynamically unstable — apparently because physiological acid-base disorder drives the damage before the chemistry does.

Shell architecture also shapes vulnerability. Under identical acidification stress, a gastropod (Tegula funebralis) whose outer layer consists of a fibrous prismatic calcite structure exposing many crystal edges to seawater lost 14–25% of its shell density. A gastropod (Nucella ostrina) armored with a dense homogeneous calcite layer lost only 8–11%. The geometry of crystals, not just their chemistry, determines how quickly an acidified ocean erodes them.

Larvae face the sharpest risks. In larval bay scallops (Argopecten irradians), shell length was reduced by 11.5% at pH 7.39, detectable within just 12 hours of exposure. Larvae that experienced early growth deficits did not subsequently catch up, suggesting that OA imposes a lasting developmental penalty rather than a temporary one. It was the early-stage death toll — larval mortality reaching 80 percent in Pacific Northwest hatcheries between 2005 and 2009 — that first brought OA’s shellfish consequences into sharp commercial focus, and led to the development of real-time aragonite saturation monitoring systems now standard in the industry.

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Environmental regulation and disruption of shell biomineralization in bivalves and gastropods: a mechanistic review

Molluscan shells are increasingly threatened by a complex array of environmental stressors—climate-related drivers, changes in seawater chemistry, contaminants, and biotic cues. This review provides a mechanistic synthesis of how these stressors disrupt the biomineralization process across life stages. We develop a conditional hierarchical response framework from the reviewed evidence. The framework links ionoregulatory and acid-base disturbances with molecular, microstructural, and shell-level responses, while allowing for compensatory, nonlinear, species-specific, and life-stage-specific outcomes. This molecular disruption manifests as defects in calcium carbonate (CaCO3) crystalline microstructure, which may in turn compromise shell macro-scale physical properties (strength, hardness, growth). We synthesize combined and context-dependent effects of co-occurring stressors and distinguish formally tested interactions from qualitative comparisons of combined treatments. Future research must leverage integrated multi-omics, advanced in vivo imaging, and multi-stressor experimental designs to unravel candidate molecular and physiological thresholds and predict adaptive potential. This framework may help identify testable mechanisms, evidence gaps, and context-dependent vulnerabilities relevant to conservation.

Highlights

  • A conditional framework links molecular, microstructural, and shell-level responses.
  • Early stages often show high sensitivity, although direct ontogenetic comparisons remain limited.
  • Energy limitation is a recurrent, but often indirectly inferred, physiological constraint.
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Parental CO₂-vent history does not improve larval performance of the sea urchin Arbacia lixula under copper and acidification

CO₂-driven ocean acidification (OA) threatens marine calcifiers, while coastal ecosystems face increasing trace-metal contamination; their combined effects, and the modulating role of parental environmental history, remain poorly understood. We used the sea urchin Arbacia lixula from a naturally acidified CO₂ vent and a nearby ambient site at Ischia (Tyrrhenian Sea) to test how chronic adult exposure to low pH shapes larval responses to copper and low pH. Offspring from ambient (pH ~ 8.1) and vent (pH ~ 7.7) adults were reared for 48 h in a fully crossed design (two pH levels × three copper concentrations: 0, 5, 20 µg L⁻¹). At 24 hpf, development was dominated by parental history: ambient-derived larvae advanced rapidly, whereas vent-derived larvae showed higher arrest and slower progression, especially under low pH and high copper. By 48 hpf these effects diminished and pH and its interaction with copper became dominant, with both origins converging toward the echinopluteus stage. Nonetheless, malformations rose sharply under low pH regardless of copper, and skeletal-rod morphometrics revealed additional copper-related effects invisible to binary abnormality classifications. Chronic parental exposure did not enhance larval tolerance and sometimes increased sensitivity, underscoring the need to integrate multiple stressors and parental legacy.

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The impact of ocean acidification on the sorption of trace metals by diatoms

Diatoms are a major phytoplankton group that plays a critical role in aquatic biogeochemical processes. Their metabolism relies on trace metals as cofactors for numerous enzymes, and changes in seawater pH may therefore influence metal sorption. Here, we investigated the effects of pH variability on diatom growth and trace-metal sorption using neutron activation analysis (NAA). Although NAA has rarely been applied to phytoplankton, we demonstrate its suitability for marine diatom samples. Overall, diatoms exposed to CO2 treatment exhibited higher cell abundance but lower intracellular elemental concentrations. In particular, Nitzschia navis-varingica showed significantly lower concentrations of Al, Ce, Co, Cr, Fe, Mg, Mn and Zn under the CO2 treatment. These trends are consistent with previous studies. For example, Zinc, which is a cofactor in many enzymes, plays a role in inorganic carbon acquisition; under lower pH, reduced enzymatic metal requirements likely explain the lower Zn concentrations observed. Nitzschia navis-varingica also had significantly lower levels of Co under lower pH. Both Thalassiosira pseudonana and Nitzschia navis-varingica showed lower Fe concentrations under CO2 treatment. As Iron is required for photosynthetic and respiratory processes that support the carbon-concentrating mechanism (CCM), reduced CCM activity at lower pH may decrease Fe demand. Overall, this study highlights NAA as a robust approach for quantifying metal sorption in marine organisms and provides new insight into the effects of ocean acidification on the growth and elemental composition of diatoms.

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Ocean acidification drives species-specific and time-dependent pigment responses in three phytoplankton taxa

Phytoplankton are primary producers in marine ecosystems and play a central role in biogeochemical cycles, yet their physiological responses to altered seawater pH vary among taxa and over time. Here, we examined the effects of sustained pH manipulation on pigment composition, growth, and dark respiration in three ecologically important phytoplankton taxa – a diatom (Pseudo-nitzschia spp.), a dinoflagellate (Heterocapsa pygmaea), and a haptophyte (Emiliania huxleyi) – during a 15-day controlled laboratory experiment. Cultures were maintained at pH 8.1, 7.8, and 7.5, representing present-day and enhanced acidification conditions. Responses to pH were species-specific and strongly time-dependent. Growth and cell-specific respiration rates showed relatively small and often transient differences among pH treatments, suggesting short-term metabolic adjustment under altered pH. In contrast, pigment composition exhibited clearer and more consistent pH-related responses, primarily expressed as shifts in temporal patterns rather than uniform directional changes. In Pseudo-nitzschia spp. and H. pygmaea, several key pigments displayed pronounced pH-dependent trajectories, whereas E. huxleyi showed greater temporal variability and weaker separation among pH treatments. Overall, these results demonstrate that photophysiological traits respond sensitively to sustained pH changes even when population-level growth and respiration remain comparatively stable, highlighting pigment composition as a potentially sensitive indicator of short-term phytoplankton acclimation to ocean acidification.

Continue reading ‘Ocean acidification drives species-specific and time-dependent pigment responses in three phytoplankton taxa’

Elevated pCO2 impairs overall byssus attachment strength in the blue mussel (Mytilus edulis) without altering byssus thread quality

Increasing atmospheric carbon dioxide (CO2) is driving global ocean acidification (OA). This process may threaten the persistence of bed-forming mussels by weakening the byssal system that anchors them to the seafloor. Here, blue mussels (Mytilus edulis) were exposed to present-day (∼460 ppm pCO2) normocapnic and projected end-century (∼1200 ppm pCO2) hypercapnic conditions for four weeks at 12 °C. Byssus production, thread morphology, whole-byssus mechanics and the underlying physiological condition index (CI) were quantified. Unlike previous studies, this study analysed the byssus as an intact functional unit. This approach better reflects its mechanical performance in situ. Median thread production fell by 50% under elevated pCO2 and the number of individuals producing no threads at all increased from 3% to 23% of the population. Thread diameter and plaque area were unaffected. Whole byssus tensile testing revealed a distinctive mechanical pattern (elastic loading, force plateau, and structural failure) regardless of environmental CO2 concentration. Whole byssus attachment strength scaled linearly with thread number in both treatments, and the mechanical work required to detach mussels under hypercapnia dropped by 42%. Elevated pCO2 reduced mussel condition index by 19% relative to the control, indicating an energetic burden. These results show that near-future ocean acidification weakens mussel attachment primarily by lowering individual physiological condition, which directly drives the reduction in total attachment energy, rather than by lowering individual thread quality. This likely results from a shift in energy use away from thread production, as seen in poorer mussel condition. As a result, mussels may become more prone to being dislodged by waves or predators. The findings of this study indicate that ocean acidification can reduce the overall strength of M. edulis beds, with important effects on rocky shore ecosystems and the viability of mussel farming in a changing climate.

Continue reading ‘Elevated pCO2 impairs overall byssus attachment strength in the blue mussel (Mytilus edulis) without altering byssus thread quality’

Shark responses to ocean acidification: physiological buffering, behavioural vulnerability, and comparative insights from teleost fishes

Highlights

  • Sharks maintain acid-base balance under elevated CO₂ via effective buffering.
  • Physiological compensation carries energetic costs that constrain aerobic scope.
  • Olfactory-mediated foraging is more OA-sensitive than baseline locomotor function.
  • Multi-stressor effects (warming + OA) amplify biological impacts across life stages.
  • Evidence is biased toward benthic species; pelagic sharks remain understudied.

Abstract

Ocean acidification (OA), driven by increasing atmospheric carbon dioxide (CO₂), is a major component of global ocean change with widespread implications for marine organisms. Sharks (elasmobranchs) are often assumed to be relatively resilient to OA due to their distinctive physiology, including strong acid–base regulation and urea-based osmoconformation. However, empirical evidence evaluating this assumption remains limited and fragmented. This review synthesizes current knowledge on the physiological, behavioural, and sensory responses of sharks to OA within a comparative framework that incorporates insights from teleost fishes. A systematic literature search following PRISMA guidelines identified studies examining OA effects across shark species and life stages. Available evidence indicates that sharks generally maintain extracellular acid-base balance under elevated CO₂, demonstrating effective physiological buffering. However, this compensation is not without cost. Energetic trade-offs, reduced aerobic scope under multi-stressor conditions, and alterations in metabolic and oxidative responses have been reported. Behavioural and sensory-mediated processes, particularly olfactory-driven foraging, appear more sensitive to OA, with impairments emerging even in the absence of obvious physiological failure. Responses are highly species-specific and often amplified by co-occurring stressors such as warming. Despite these findings, current data are strongly biased toward small, benthic species, with limited representation of pelagic taxa and long-term responses. Sharks cannot be considered uniformly resilient to OA; rather, their responses are context-dependent, energetically constrained, and potentially consequential at population and ecosystem levels. Future research integrating long-term, multi-stressor, and mechanistic approaches will be critical for improving predictions of shark responses under ongoing ocean change.

Continue reading ‘Shark responses to ocean acidification: physiological buffering, behavioural vulnerability, and comparative insights from teleost fishes’

High-resolution mapping of carbonate system parameters over coastal waters using integrated uncrewed aircraft systems (UAS) and Autonomous Surface Vessel (ASV) observations

Coastal acidification, distinct from ocean acidification, is influenced by localized factors such as nutrient runoff, freshwater input, and decomposition. This study estimates carbonate system parameters in the Western Mississippi Sound (WMS) using integrated uncrewed aircraft systems (UAS) and autonomous surface vessel (ASV) observations. During 2018 to 2022, high-ressolution UAS imagery and in 2021 in situ ASV data including pH, pCO2, SST, SSS, CDOM, and Chl-a were collected. Machine learning algorithms were developed to estimate pCO2 and total alkalinity (TA), with random forest models achieving high accuracy (R2 > 0.91). A CDOM-based model was developed to derive SSS, which, along with Chl-a, fed into time-series mapping of TA and pCO2. Results highlight the effectiveness of combining UAS and ASV data to produce fine-scale carbonate system maps. This approach supports improved monitoring of coastal acidification and can be extended to estimate additional parameters such as calcite and aragonite saturation states and DIC.

Continue reading ‘High-resolution mapping of carbonate system parameters over coastal waters using integrated uncrewed aircraft systems (UAS) and Autonomous Surface Vessel (ASV) observations’

Air–sea CO2 exchange in the Southern Adriatic Sea: assessing its role as a moderate carbon sink over the last decade (2015–2024)

Coastal waters contribute significantly to the total oceanic carbon uptake. In this context, the cumulative influence exerted by marginal seas may be conspicuous. However sparse and unevenly distributed observations in such regions pose a serious limit to an accurate, experimentally based quantification of carbon dynamics. The Southern Adriatic (SAd) is one of the key sites of the Mediterranean Sea where open-ocean deep water formation occurs, a process recognized as a major driver of carbon sequestration. However, observations in this region remained sparse, thus quantitative assessment of surface carbon dynamics and air-sea carbon flux are still limited. In this study, a recently validated, decade-long (2015–2024) high-resolution time series of surface partial pressure of CO2 (pCO2 sw) and hydrographic measurements collected at the EMSO-E2M3A South Adriatic observatory, located at the centre of the Southern Adriatic Pit, has been analysed. The results showed that seasonal temperature variability and winter vertical mixing were the dominant drivers of pCO2 sw variability, with biological processes likely contributing during the post-convective period. Air–sea CO2 flux (FCO2), derived from in situ observations, indicated a clear seasonal pattern, with the SAd acting as a CO2 sink during winter and as a source during summer. Importantly, the results revealed that the SAd acted as a weak-to-moderate annual carbon sink over the last decade. However, the magnitude of FCO2 was strongly influenced by the selected gas transfer velocity parametrization. Similarly, the use of a different wind speed input, for instance ERA5 reanalysis, also altered the estimated CO2 flux, highlighting the importance of carefully selecting wind products for regional air-sea FCO2 calculations. Finally, the results presented here showed how time series such as the SAd dataset can serve as critical assets for validating operational ocean models, such as the European Copernicus Marine Service for the Mediterranean, by helping to identify discrepancies in the simulation of key processes.

Continue reading ‘Air–sea CO2 exchange in the Southern Adriatic Sea: assessing its role as a moderate carbon sink over the last decade (2015–2024)’

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