Posts Tagged 'Mediterranean'

Combined effects of ammonium and pH on sea urchin embryogenesis: insights for sediment quality assessment

Published 30 April 2026 Science Leave a Comment
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Highlights

  • Reduced pH enhances ammonium toxicity on sea urchin embryos in filtered seawater.
  • In elutriates ammonium is a major driver of P. lividus embryotoxicity.
  • Data support setting ammonium thresholds in sediment quality frameworks.
  • Ocean acidification potentially increases ammonium toxicity for sea urchin larvae.

Abstract

Ammonium is a key component of coastal marine systems, originating from both natural and anthropogenic sources, with possible toxic effects on marine organisms depending on the concentration and pH. This study evaluates, for the first time, the combined effects of ammonium and seawater acidification on early development of the sea urchin Paracentrotus lividus under both laboratory conditions and exposure to environmental matrices derived by dredged sediments from harbor area. Embryos were incubated with increasing concentrations of ammonium in filtered seawater at pH 8.1 and 7.6, as well as in sediment elutriates from the Pescara harbor (Adriatic Sea, Italy), selected as a case study with relevant concentrations of ammonium (0.1–3.5 mg/L). A combined effect between ammonium and pH was observed, with increasing ammonium toxicity by ∼20% at pH 7. Moreover, in sediment elutriates, ammonium affect sea urchin embryo development, with EC50 ranging between 1.388 and 1.538 mg/L NH4+ at pH 8.1 and 7.6, respectively, without significant differences due to pH. Chemical analyses of sediments confirmed low levels of trace metals and organic pollutants, indicating that ammonium is the primary driver of embryotoxicity without a direct toxic effect of other contaminants. The results further underscore the need to integrate ammonium assessment into sediment quality frameworks and for management strategies, particularly in the context of future ocean acidification, to safeguard the early life stages of sensitive marine invertebrates.

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Unravelling marine benthic functioning shifts under ocean acidification

Published 10 April 2026 Science Closed
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Ocean acidification (OA) driven by increasing atmospheric CO2 is altering marine biodiversity. However, impacts of OA on ecosystem functioning at the community level, including calcification, primary production and nutrient uptake, remain largely unknown. Here, we conducted community transplant experiments at natural CO2 vents to assess how declining pH affects marine community species composition, biomass, and key ecosystem processes over time. Our results indicate that community shifts caused by declining pH lead to decreased biomass and calcification rates, while photosynthesis and nutrient uptake rates increased. By leveraging OA field model systems and in situ measurements of ecosystem functioning, this study provides critical insights into how OA-induced biodiversity loss reshapes the structure and functioning of temperate marine coastal ecosystems.

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An interpretable machine learning approach for alkalinity reconstruction in the Mediterranean Sea

Published 9 April 2026 Science Closed
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Highlights

  • Genetic Programming provides interpretable alkalinity models for Mediterranean Sea.
  • Genetic Programming models capture typical alkalinity patterns and its finer-scale variability.
  • Genetic Programming matches or exceeds linear models while remaining interpretable.
  • Neural networks yield lowest errors but lack model transparency.

Abstract

Ocean acidification has significant impacts on marine ecosystems and human activities, and its understanding relies on an accurate characterization of the marine carbonate system, in which alkalinity plays a central role.

We propose a Machine Learning (ML) approach based on Genetic Programming (GP) to model alkalinity and apply this framework to the surface layers of the Mediterranean Sea. Our framework produces interpretable equations that capture alkalinity typical patterns and its finer-scale variability by inferring its relation with key physical and biogeochemical variables.

Results, supported by quantitative metrics and visual analyses, demonstrate that our method reliably reproduces the spatio-temporal variability of alkalinity with a high level of predictive accuracy when compared with in situ observations. Moreover, we use the derived alkalinity equations to produce gap-free 2D surface alkalinity maps using satellite data. The maps correctly capture spatial gradients, seasonal patterns, and riverine contributions, reinforcing the robustness of the proposed approach.

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Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea

Published 7 April 2026 Science Closed
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The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.

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Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions

Published 30 March 2026 Science Closed
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Background

Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.

New information

This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.

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Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates

Published 24 March 2026 Science Closed
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Background

Over the past 50 years, the oceans have absorbed over 90% of global warming heat, leading to warming, acidification and declining oxygen levels that are disrupting marine ecosystems and altering species distributions and productivity. The vulnerability of marine organisms to these changes depends on their biological traits, habitat conditions and adaptive capacity, influencing their growth, behaviour and overall population health. Micro-computed tomography (micro-CT) has been previously used for studying the morphological traits of marine invertebrates, which provide important insights into species functionality and responses to climate change and ocean acidification. Micro-CT enables non-destructive, high-resolution 3D analysis of internal and external structures, allowing precise measurement of traits such as density, porosity and morphology that are valuable for climate change research.

New information

The present manuscript describes micro-CT imaging datasets generated to investigate the effects of climate change on the morphological structure of two benthic marine invertebrates: the low-motility gastropod Hexaplex trunculus (Linnaeus, 1758) and the sessile sponge Chondrilla nucula Schmidt, 1862. Both species are considered particularly vulnerable to environmental stressors. To date, no study has investigated the effects of ocean warming and acidification on sponges using micro-CT technology. Using a common garden experimental design, individuals from geographically distinct populations exposed to different natural environmental regimes were subjected to combined warming and acidification scenarios to assess their morphological responses and adaptive capacity.

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Coulometric readout of ion-selective electrodes for an aquatic pH probe

Published 17 March 2026 Science Closed
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Ion-selective electrodes are widely used for the detection of ions in aqueous solutions such as natural waters. Their origin traces back to 1909 with the invention of the pH glass electrode. Nowadays, routine pH measurements are still performed by potentiometric measurements with glass electrodes. The phase-boundary potential difference at the glass membrane-sample interface, measured against a reference electrode, relates to solution pH following the Nernst equation. While being user-friendly, they suffer from multiple drawbacks. Firstly, their sensitivity is intrinsically dictated by the Nernst equation and is limited to 59.2 mV/pH at 25 °C. This might not be sufficient for applications where high precision pH sensing is required, such as ocean acidification monitoring. Secondly, a Nernstian response can only be obtained if all the other potential differences in the overall electrochemical cell are constant over the whole experimental procedure. This is not the case when, for example, the temperature or the ionic strength of the sample change during the measurement routine. The former influences the glass electrode itself, while the latter rather affects the reference electrode via liquid junction potential variations.

This thesis presents enhancements to the potentiometric experimental setup for pH sensing with glass or polymeric membrane pH electrodes, achieved through the integration of electronic components, chemical symmetry and open liquid junctions. A dynamic electrochemical readout called constant potential coulometry is explored for in situ pH sensing in coastal waters by implementation in a submersible probe deployed in the Krka River estuary in April 2025.

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Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents

Published 16 March 2026 Science Closed
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Seagrass meadows are natural carbon sinks, yet the effect of ocean acidification on their carbon burial capacity remains poorly understood. Here we investigated natural carbon dioxide vents in Ischia, Italy to assess how seawater pH influences carbon burial in an area dominated by the seagrass Posidonia oceanica. Organic carbon burial rates (mean ± standard error) between 1954 – 2021 were low under ambient conditions (1.5 ± 0.5 g m-2 yr-1) but increased sharply under acidified conditions (7 ± 1 g m-2 yr-1), reaching sevenfold higher values under extreme acidification (10 ± 3 g m-2 yr-1). Stable isotopes suggest that these patterns reflect changes in the relative contribution of seagrass, macroalgae, and epiphytes to buried carbon. These findings reveal that ocean acidification can substantially alter coastal carbon cycling, potentially through shifts in community composition, with important implications for understanding past and future feedbacks between seagrass ecosystems and the marine carbon cycle.

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‘Irreversible loss’: how climate change is threatening Europe’s sunken civilisations

Published 11 March 2026 Press releases Closed
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Climate change is endangering the health of Europe’s oceans, and it’s not just marine life that is affected.

A new study warns that precious underwater cultural heritage is being threatened by ocean acidification.

The research found that materials that make up many archaeological treasures are at risk of deterioration when water pH levels drop.

The research, coordinated by the University of Padua in Italy, examined how ocean acidification, a direct consequence of climate change, can accelerate the decay of submerged archaeological sites.

The scientists studied how quickly historical materials deteriorate through dissolution and biological decay in marine environments, and then integrated these findings with large-scale climate models, lead researcher Luigi Germinario explains.

The results were concerning. While stone degradation was minimal in pre-industrial times and remains relatively limited today, rising emissions could trigger an exponential increase in deterioration rates.

These changes would be “irreversible over the coming decades and centuries, influenced by the materials’ properties and shifting dynamics of biocolonisation” – the growth of microorganisms on the surfaces of submerged structures – Germinario told Italian national newspaper La Repubblica.

The study, published in Communications Earth & Environment, warned that “ocean acidification will pose a severe challenge to protecting underwater cultural heritage, making conservation and adaptation policies more urgent than ever.”

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Physics-guided machine-learning forecasting and analysis of carbonate changes in the surface Western Mediterranean

Published 3 March 2026 Science Closed
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Highlights

  • Physics-guided ML forecasts surface pCO2 and pH along a Western Mediterranean VOS line.
  • Day-ahead pCO2 is predicted with μatm-level RMSE; pH behaves nearly deterministically.
  • Boosted trees and sequence models retain skill under strict, deployable forecast conditions.
  • Explainable AI recovers dominant thermal control and air–sea CO2 gradient drivers.
  • Improved pCO2 forecasts directly reduce uncertainty in air–sea CO2 flux estimates.

Abstract

We introduce a hybrid, physics-guided machine-learning system for forecasting and explaining surface marine carbonate changes along a fixed Volunteer Observing Ship route between Gibraltar and Barcelona from 2019 to 2024. The dataset includes more than 90 high-frequency transects collected under ICOS/SOOP standards, containing underway pCO2/fCO2, pH (measured and derived), sea-surface temperature, and salinity. After applying consistent quality control and harmonizing the data in time and space, we combine physics-based carbonate diagnostics—such as the thermal/non-thermal decomposition (FASS) and first-order Taylor attribution of temperature, salinity, total alkalinity, and dissolved inorganic carbon sensitivities—with time-aware models including linear regressions, boosted trees, and sequence networks (1-D CNNs and LSTMs) trained on historical windows. We evaluate generalization and uncertainty through chronological splits, leave-one-year-out tests, and year-wise bootstrap sampling. With all current predictors available, day-ahead pH and pCO2 predictions reach near-optimal skill; pH behaves almost deterministically, while pCO2 achieves RMSE on the order of a few μatm. Even under stricter forecast conditions without real-time carbonate chemistry, boosted trees and sequence models maintain strong performance by exploiting persistence and seasonal timing. Model-explanation tools (SHAP, partial dependence) recover the expected carbonate drivers, highlighting dominant thermal effects and key roles of seawater CO2 state and air–sea gradients. Spatial–temporal diagnostics reveal amplified summer pCO2 peaks in the Alboran/northern Morocco region and out-of-phase pH patterns. Predicted fields are converted to air–sea CO2 flux using standard solubility and gas-transfer formulations, and propagated uncertainties show that improving pCO2 accuracy directly reduces flux uncertainty. The resulting air–sea CO2 fluxes exhibit a pronounced seasonal cycle, with summer outgassing reaching several mmol m-2 d-1 and winter uptake of comparable magnitude along the transect, while interannual variability dominates over 2019–2024 and no statistically robust long-term trend is detected; typical flux uncertainties are on the order of 0.1–0.2 mmol m-2 d-1. Altogether, this delivers an explainable, uncertainty-aware system ready for deployment, linking forecast skill to process understanding and CO2 exchange in a climate-sensitive corridor.

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A standardised experimental setup for simulating ocean warming and acidification in benthic marine invertebrates

Published 26 February 2026 Science Closed
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Recent studies identify ocean warming and acidification as major drivers of ecological change in the Eastern Mediterranean, posing serious threats to marine biodiversity, particularly for sessile or low-mobility organisms that cannot escape unfavourable conditions. At the same time, the need for standardised experimental approaches capable of generating high-quality data on organismal responses to multiple climate stressors has become increasingly evident. This manuscript presents a fully detailed and replicable experimental framework for simulating ocean warming and acidification in benthic marine invertebrates under controlled laboratory conditions. Detailed protocols include the technical set-up, experimental design, selection of climate scenarios, monitoring procedures and criteria for species selection and demonstrating its application through a validation case study from the MACCIMO project.

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Ocean acidification modifies site fidelity and patterns of seagrass habitat use by a herbivorous fish

Published 25 February 2026 Science Closed
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Ocean acidification (OA), characterized by changes in seawater chemistry and a concomitant decline of pH due to the uptake by seawater of the atmospheric CO2, will profoundly shape marine ecosystems. The lower pH/higher pCO2 can act negatively (as a stressor for organisms with a calcareous exoskeleton) or positively (as a direct resource for primary producers like macrophytes). Consequently, herbivores may indirectly benefit from OA counteracting the direct negative effects of living under high pCO2/low pH conditions. Here, we investigated how OA may influence site fidelity, habitat use, and trophic behaviour patterns of Sarpa salpa, the main herbivorous fish associated with Posidonia oceanica meadows in the north-western Mediterranean Sea. We assessed if and how OA influences the habitat use of S. salpa by comparing natural tags, in otoliths and muscle tissues, between CO2 vents and reference pH sites. We did not find differences in otolith elemental composition and shape among fish exposed to different pH conditions (CO2 vent vs ambient pH sites). However, otolith isotopic signatures differed between life stages (young vs sub-adults), consistent with the variations observed in seawater-dissolved inorganic carbon across sites. Finally, comparisons of the nutritional value marine vegetation (macroalgae, P. oceanica, epiphytes) showed that P. oceanica and epiphytes were more nutritious at CO2 vents, along with increased consumption by S. salpa. This trophic separation indicates that S. salpa spent more time exploiting the trophic resources in the CO2 vents. Together, our findings shed new light on plant–herbivore interactions within P. oceanica meadows under future OA scenarios.

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Population-level transcriptomic datasets from two benthic invertebrates exposed to long-term experimental warming and acidification

Published 18 February 2026 Science Closed
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Ocean warming and acidification are major drivers of change in marine ecosystems, with particularly strong impacts on low-mobility benthic organisms. Despite their ecological importance, genomic and transcriptomic resources for sponges (Phylum: Porifera) and marine gastropods (Phylum Mollusca) that capture responses to long-term, combined climate stressors and population-level variability remain limited. Herein, we present population-level RNA-seq datasets from the sponge Chondrilla nucula and the gastropod Hexaplex trunculus, collected from northern and southern Aegean Sea (Eastern Mediterranean) populations and exposed for three months to elevated temperature and reduced pH in a common garden experiment simulating near-future climate change conditions. The datasets comprise high-quality paired-end Illumina reads, a complete de novo transcriptome assembly for C. nucula, and genome-guided alignments for H. trunculus. These datasets provide a valuable resource for investigating transcriptional plasticity and climate change resilience in benthic marine invertebrates.

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Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions

Published 16 February 2026 Science Closed
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Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.

This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.

Continue reading ‘Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions’

Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates

Published 6 February 2026 Science Closed
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Over the past 50 years, the oceans have absorbed over 90% of global warming heat, leading to warming, acidification, and declining oxygen levels that are disrupting marine ecosystems and altering species distributions and productivity. The vulnerability of marine organisms to these changes depends on their biological traits, habitat conditions, and adaptive capacity, influencing their growth, behavior, and overall population health. Micro-computed tomography (micro-CT) has been previously used for studying the morphological traits of marine invertebrates, which provide important insights into species functionality and responses to climate change and ocean acidification. Micro-CT enables non-destructive, high-resolution 3D analysis of internal and external structures, allowing precise measurement of traits such as density, porosity, and morphology that are valuable for climate change research.

The present manuscript describes micro-CT imaging datasets generated to investigate the effects of climate change on the morphological structure of two low-motility benthic marine invertebrates: the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Both species are considered particularly vulnerable to environmental stressors. To date, no study has investigated the effects of ocean warming and acidification on sponges using micro-CT technology. Using a common garden experimental design, individuals from geographically distinct populations exposed to different natural environmental regimes were subjected to combined warming and acidification scenarios to assess their morphological responses and adaptive capacity.

Continue reading ‘Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates’

Resilience of the macroalgae Gongolaria barbata under ocean acidification: physiological responses and restoration perspective

Published 3 February 2026 Science Closed
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The increasing CO2 concentration is a major cause of the climate change phenomenon. Concurrently, the same increase is leading to ocean acidification (OA), which is projected to decrease seawater pH by 0.4 units by 2100. Here we investigated the potential impacts of OA on the canopy-forming brown macroalga Gongolaria barbata from the Venice Lagoon. One-year-old individuals were maintained in mesocosms under two pH levels: 8.1 (current ambient value) and 7.7 (the end-of-the-century value predicted under the current scenario of anthropogenic CO2 emissions). The physiological responses of the algae were assessed during the experiment in terms of oxygen production and consumption, and maximal PSII photochemical efficiency. At the end of the experiment, we analyzed the percentage of mature receptacles, algal growth rate and the total polyphenolic content and antioxidant capacity as indicators of the stress response. The significant decrease in polyphenolic content indicates the impairment of the defence mechanisms, which could make the algae more vulnerable to grazing under acidified conditions. Yet, conversely, our results suggest that changes in pH levels do not significantly affect the physiological processes, growth or fertility of the algae. These findings suggest that while OA may weaken defence mechanisms, the preservation of physiological and reproductive functions would still support the potential of G. barbata populations from the Venice Lagoon to act as donor sources for restoration efforts, highlighting their resistance to the acidified conditions expected in the future.

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Triple threat: ocean acidification, warming, and hyposalinity synergistically weaken shell integrity in a Mediterranean calcifying mollusk

Published 30 January 2026 Science Closed
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Highlights

  • OA, OW, and hyposalinity drive skeletal and mineralogical responses in a Mediterranean clam.
  • Combined stress makes shells less dense, more porous, and more fracture-prone.
  • Microstructural changes reveal early calcification impairments under triple stress.
  • Triple-stressor synergy compromises shell integrity and threatens fishery species resilience.

Abstract

Anthropogenic climate change is rapidly altering marine environments primarily through ocean warming, acidification, and hyposalinity, posing significant challenges for marine calcifying organisms. This study investigated the short-term effects of these stressors on the Mediterranean bivalve Chamelea gallina, a key fishery species in the Adriatic Sea, by integrating skeletal, mechanical, and mineralogical responses. Adult clams of commercial size were exposed for 21 days to eight experimental treatments manipulating two levels of temperature (18 °C vs. 22 °C), pH (8.0 vs. 7.9), and salinity (35 vs. 32), chosen to reproduce near-future climate projections and the freshwater-driven variability typical of the Adriatic Sea. Despite the short exposure duration, the combined exposure to low pH, high temperature, and reduced salinity weakens the shell of Chamelea gallina at multiple levels, compromising shell integrity, by making shells less dense, more porous, more fragile, and more susceptible to fracture, and increasing mortality. Microstructural analysis revealed smaller aragonite crystallites and lower calcium content, indicative of early impairments in the calcification process. The study highlights the occurrence of synergistic effects among stressors and reveals the vulnerability of Chamelea gallina to near-future ocean conditions, with potential cascading consequences for ecosystem functioning and fishery sustainability, given the species’ key ecological role and commercial relevance in the Adriatic Sea.

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Climate change and ocean acidification pose a risk to underwater cultural heritage

Published 27 January 2026 Science Closed
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Ocean acidification caused by climate change drives a spectrum of ecological impacts on the marine environment, while also posing a lurking threat to the traces of human history lying on seabeds. We present a quantitative assessment of the climate change risk to underwater cultural heritage, focusing on the vulnerability of historical stone materials to shifting ocean pH levels. We monitored the amount and rate of stone surface material loss and textural alteration triggered by natural processes of mineral dissolution and biodeterioration in submarine settings, combining field and laboratory experimentations with climate models. Stone deterioration has been minimal in pre-industrial and present times; however, escalating anthropogenic emissions might lead to an exponential surge in vulnerability, with irreversible decay processes accelerating in the next decades and centuries, constrained by material properties and shifting biofouling dynamics. Ocean acidification will dramatically challenge the protection of underwater cultural heritage, demanding urgent preservation and adaptation policies.

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An experimental approach to study climate change stress in benthic marine invertebrates

Published 26 January 2026 Science Closed
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Climate change is altering ocean temperature and chemistry, with ocean warming and acidification posing serious threats to marine biodiversity, particularly for sessile or low-mobility organisms that cannot escape unfavorable conditions. The MACCIMO project investigated the effects of these stressors on the sponge Chondrilla nucula and the gastropod Hexaplex trunculus using an integrative approach that examined molecular, physiological, morphological, and symbiotic responses. By applying a common garden experiment to populations from different Mediterranean regions, the study aimed to distinguish genetic and environmental influences on stress tolerance and assess intraspecific variability. Three experimental scenarios were simulated, including a control treatment and two climate change treatments based on the “high GHG emissions” RCP 8.5 scenario. A semi-enclosed experimental system with precise control of temperature and pH was designed which can be easily replicated to support laboratory studies on the effects of climate change and ocean acidification on small marine invertebrates across multiple biological levels.

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Ocean acidification and anthropogenic carbon in the Eastern Mediterranean Sea and the effects of acidification on marine organisms

Published 15 January 2026 Science Closed
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Ocean acidification (OA), driven by rising atmospheric carbon dioxide (CO2) levels, is a critical issue affecting our oceans. The Eastern Mediterranean Sea (EMS) remains poorly understood in terms of the carbonate system and the impact of OA, despite its key role in Levantine Intermediate Water (LIW) formation and its peculiar characteristics in buffering capacity and ongoing OA. This study provides the first comprehensive spatial and temporal assessment of carbonate system in the North-Eastern Levantine Basin, in EMS, providing essential reference data for Total Alkalinity (TA), Dissolved Inorganic Carbon (DIC), and Anthropogenic Carbon (CANT). The mean TA of the measurements was 2622.11 μmol/kg, with higher surface values in summer, reflected also in the surface salinity (S) maximum caused by strong evaporation. A clear vertical gradient was observed, with TA decreasing with depth. Hot and dry meteorological conditions contribute to increased S and TA, resulting in seasonal and vertical variations in the water column. The mean DIC of the measurements was 2291.23 μmol/kg. In contrast to the observations for TA, surface DIC values were higher in winter than in summer. The higher DIC values in winter are attributed to thermodynamic equilibrium and vertical mixing in the surface waters. This study has also investigates the presence of CANT, has infiltrated deep layers, with a mean concentration of 52.07 μmol/kg, decreasing significantly throughout the water column. These findings confirms the ongoing influence of human activities on intermediate and deep layers in EMS. To reconstruct past carbonate system dynamics, the relationships of TA and DIC were determined with salinity (S) and temperature (T) data. Long-term data from METU-IMS Erdemli Time Series (ETS) stations, collected monthly for a decade, provided valuable findings into seasonal patterns and temporal shifts in TA, DIC, and pH. The coastal station displayed clear trends in the carbonate system over time, reflecting its sensitivity to local environmental changes. In contrast, the offshore station exhibited minimal variability, indicating greater stability against seasonal and long-term fluctuations. These results highlight the heightened vulnerability of coastal waters to carbonate system changes, while offshore waters remain more stable. Understanding carbonate chemistry and acidification levels is crucial for assessing impacts on marine life. In addition to the characterization of carbonate chemistry, this study also explores OA’s biological impacts on two key organisms of the Mediterranean ecosystem: phytoplankton and mussels. Firstly, effects of elevated CO₂ on phytoplankton, an essential primary producer in aquatic food webs and global biogeochemical cycles are explored. Specifically, the study explores the impacts on phytoplankton physiology, focusing on growth rates, respiration, and photopigment content in selected species from the coccolithophores, dinoflagellates, and diatoms groups. While growth rates and respiration remained relatively stable under reduced pH conditions, photopigment content was significantly influenced by changes in seawater pH, highlighting the importance of considering environmental influences on photopigment composition. The study further investigated the effects of acidification on calcifying organisms through a global program aimed at understanding the long-term effects of acidification on key seafood species and exploring adaptation strategies with a collaborative approach. This study focused on the long-term (6 months long experiment) physiological impacts of OA on marine calcifiers, specifically Mediterranean mussel, Mytilus galloprovincialis, an abundant species and one of the most consumed non-fish marine species in Türkiye. Results indicate that OA poses a substantial threat to mussel health and survival. Reduced pH levels negatively impacted survival rates, while other physiological parameters like clearance rate, condition index, respiration, and the distribution of a radionuclide, 210Po, did not significantly change. However, lipid content and immune response were affected. Oxygen consumption decreased over time, especially at lower pH. This study underscores the potential risks of OA to the fitness of the commercially important mussel species, indicating that future OA may impact both this key seafood species and its associated ecosystems. The established baseline data are crucial for future monitoring and provide valuable insights into the vulnerability of marine organisms and ecosystems to ongoing OA. By integrating chemical, biological, and ecological perspectives, this dissertation offers a comprehensive assessment of OA in EMS. It establishes baseline data for carbonate system variables, revealing distinct spatial and temporal variations influenced by S, T, and mixing processes. By linking changes in carbonate chemistry to physiological responses in primary producers and a commercially vital shellfish species, this study highlights the ecological and economic impacts of OA in EMS. The findings emphasize the need for continued research and mitigation efforts to protect marine ecosystems and commercially important species. This integrated approach provides valuable insights into the vulnerability of marine organisms and ecosystems to ongoing OA, underscoring the significance of this research for the Mediterranean Sea.

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