Posts Tagged 'Mediterranean'

Fish trait-based indicators of mercury bioaccumulation under natural ocean acidification: insights from a mediterranean CO₂ vent system

Published 22 July 2026 Science Leave a Comment
Tags: , , , , , , , , , , , , , ,

Highlights

  • Low pH conditions at CO₂ vents increase THg bioavailability and fish exposure.
  • Functional traits explain THg patterns better than species identity.
  • Under low pH, less-mobile benthic fish accumulate more THg than highly-mobile fish.
  • Trophic position drives stronger THg biomagnification at low pH sites.

Abstract

Ocean acidification is not an isolated climate-related threat to marine organisms, as it may act in combination with other stressors such as trace element contamination. Here, we took advantage of naturally acidified conditions and mercury spill-out from the shallow CO2 vent of Vulcano Island (Italy) to test whether fish functional traits explain contaminant dynamics better than species identity under ocean acidification scenarios. Specifically, we investigated if trophic group and mobility influence total mercury (THg) bioaccumulation and trophic transfer in fish inhabiting Cymodocea nodosa seagrass meadows under low and ambient pH conditions. Low-mobility benthic fish, mainly represented by invertebrate feeders and small piscivores, exhibited higher THg concentration at the vent site than at reference sites, while highly mobile zooplanktivorous fish showed no significant differences, highlighting the importance of fish mobility and local trophic benthic pathways in shaping contaminant exposure and bioaccumulation. Moreover, the relationship between trophic position and THg concentration in fish was stronger in the low pH site, indicating enhanced trophic transfer and biomagnification when Hg availability is higher. In contrast, weak or absent biomagnification in the reference sites suggests that Hg transfer depends more on contaminant availability and food web structure than trophic position alone. Overall, these findings indicate that functional traits better predict Hg bioaccumulation patterns than species identity, supporting trait-based approach to assess contaminant dynamics in future ocean acidification scenarios.

Continue reading ‘Fish trait-based indicators of mercury bioaccumulation under natural ocean acidification: insights from a mediterranean CO₂ vent system’

Climate change and ocean acidification outweigh local stressors in Mediterranean mussels: a multi-method convergence analysis

Published 15 July 2026 Science Closed
Tags: , , , , , , , ,

Highlights

  • Climate change explains ∼40% of biological stress variance in Mediterranean mussels.
  • Ocean acidification drives 67% of metal bioavailability changes via pH-metal speciation.
  • 64% of climate effects on biomarkers operate indirectly through metal bioaccumulation.
  • Multi-method convergence (LMG, GAM, SEM, Bayesian Networks) confirms stressor ranking.
  • Only SSP1-2.6 keeps biological stress below the chronic-stress threshold through 2050.

Abstract

Marine coastal ecosystems face concurrent pressure from climate change and anthropogenic contamination, yet their relative contributions to biological stress remain poorly quantified. Here we present a decade-long (2014–2023) biomonitoring study on Mytilus galloprovincialis in the Ligurian Sea (NW Mediterranean), integrating quarterly biomarker measurements, heavy metal bioaccumulation data (12 metals), and high-resolution oceanographic records at a control site (Gorgona Island Marine Protected Area) and an offshore regasification terminal.

Biological stress variance was partitioned using five complementary analytical frameworks — Lindeman–Merenda–Gold (LMG) variance decomposition, Hierarchical and Generalised Additive Models (HGAM/GAM), Structural Equation Modelling (SEM), and Bayesian Networks — applied to four biomarkers: DNA damage, lysosomal membrane stability, gill tissue integrity, and immune response. A campaign-specific T0 baseline normalisation isolated environmental signals from initial population variability.

Climate change emerged as the dominant driver, consistently explaining ∼40% of variance across all methods, significantly exceeding metal bioaccumulation (∼30%), terminal influence (∼13%), and seasonal effects (∼2%). Ocean acidification was the primary climate mechanism, influencing 67% of analysed metals. Causal mediation analysis revealed that 64% of the climate effect operates indirectly through enhanced metal bioaccumulation (Climate→Metals→Biomarkers), while 36% acts directly. Climate and biological stress indices co-varied strongly (ρ = 0.78, p < 0.001), with marine heatwaves coinciding with peak biomarker responses.

Under IPCC Shared Socioeconomic Pathway (SSP) scenarios, the Biological Stress Index is projected to cross chronic-stress thresholds by 2035–2040 under the high-emission scenario (SSP5-8.5) and the intermediate-emission scenario (SSP2-4.5), with only the low-emission scenario (SSP1-2.6) maintaining stress below critical levels through 2050.

These findings challenge pollution-centric monitoring paradigms and demonstrate that CO2 mitigation now constitutes the highest-leverage intervention for marine invertebrate health in the Mediterranean.

Graphical abstract

This graphical abstract illustrates the main findings of a decade-long field study (2014–2023) on the effects of climate change and metal contamination on Mytilus galloprovincialis in the Ligurian Sea (NW Mediterranean). Three panels summarise the causal chain from environmental drivers to biological outcomes. The first panel depicts the key oceanographic trends recorded at the study site: ocean warming (+0.41°C/decade), acidification (−0.020 pH units/decade), deoxygenation, and a doubling of marine heatwave frequency after 2018. The second panel shows how pH decline enhances the bioavailability of 67% of the metals analysed, driving a predominantly indirect pathway (64%) from climate stressors to biological stress, mediated by metal bioaccumulation, as revealed by structural equation modelling and Bayesian network analysis. The final panel presents the four biomarkers used to compute the Biological Stress Index (BSI), its strong temporal correlation with the Climate Change Index (ρ = 0.78), and BSI projections to 2050 under three IPCC emission scenarios, showing that only SSP1-2.6 keeps BSI below the chronic-stress threshold throughout the projection period.

Continue reading ‘Climate change and ocean acidification outweigh local stressors in Mediterranean mussels: a multi-method convergence analysis’

The effects of single and multiple climate-driven stressors exposures on the seagrass Posidonia oceanica: phenological, cellular, and genetic adaptations

Published 10 July 2026 Science Closed
Tags: , , ,

Posidonia oceanica is a foundation seagrass species endemic to the Mediterranean Sea, where it forms highly productive meadows that support biodiversity, coastal protection and long-term blue carbon storage. However, these ecosystems are increasingly threatened by the combined effects of climate change and local anthropogenic pressures, including ocean warming, marine heatwaves, ocean acidification, hypersalinity and thermal pollution. Despite growing evidence of the vulnerability of P. oceanica to environmental change, the mechanisms underlying its acclimation capacity, resilience and potential vulnerability thresholds remain only partially understood, particularly under multiple-stressor scenarios.This study investigates the responses of P. oceanica to climate change-related stressors across multiple levels of biological organization, integrating evidence from meta-analysis, controlled mesocosm experiments, molecular analyses and field observations. Special attention is given to the role of environmental history in shaping population-specific responses, comparing plants exposed to contrasting environmental conditions and assessing their phenological, physiological, metabolic and molecular performance under single and combined stressors.By linking organismal, molecular and meadow-scale responses, this work provides new insights into the capacity of P. oceanica to cope with future climate scenarios and local anthropogenic disturbances. The findings contribute to identifying resilience mechanisms and vulnerability patterns in Mediterranean seagrass ecosystems, supporting the development of more effective monitoring, management and conservation strategies under ongoing global change.

Continue reading ‘The effects of single and multiple climate-driven stressors exposures on the seagrass Posidonia oceanica: phenological, cellular, and genetic adaptations’

Skeletal porosity of a cold-water coral increases with decreasing aragonite saturation state along a depth gradient in the Mediterranean Sea

Published 29 June 2026 Science Closed
Tags: , , , , , , ,

Background

Cold-water corals (CWCs) are key ecosystem engineers that create complex three-dimensional habitats much like tropical reefs, but in deep, cold seas. However, like other reef-building systems, they are increasingly threatened by climate change and ocean acidification. CWC communities in the Mediterranean Sea may be especially vulnerable because these waters absorb more atmospheric CO2 than the global ocean, making it a mesocosm that mirrors broader global trends affecting marine life. Since calcification is energetically costly and likely becomes even more demanding as pH and carbonate ion availability decline, understanding how the decrease in aragonite saturation state (Ωarag) affects biomineralization is essential for predicting the future of these corals.

Results

Here, we investigated skeletal structural and compositional changes of the scleractinian CWC Desmophyllum dianthus along an Ωarag gradient in the Mediterranean Sea using specimens collected between 400 and 1200 m depth. Our findings indicate that skeletal porosity increases at the macro-scale with decreasing Ωarag, while micro- and nano-scale structural and compositional features remained unaffected.

Conclusions

The persistence of micro- and nano-scale skeletal features across an 800 m depth gradient suggests that D. dianthus maintains tight biological control over mineralization at these scales, even as Ωarag declines. This control does not extend to the macro-scale, where increasing porosity alters the skeleton’s overall architecture under lower Ωarag. D. dianthus thus appears to preserve the fundamental “building blocks” of its skeleton while changing its larger-scale structure, a decoupling that may make macro-scale porosity an early marker of acidification stress in CWCs.

Continue reading ‘Skeletal porosity of a cold-water coral increases with decreasing aragonite saturation state along a depth gradient in the Mediterranean Sea’

Will the Mediterranean sea be a cul-de-sac for marine gastropods under climate change?

Published 23 June 2026 Science Closed
Tags: , , , , , , , , ,

Marine ecosystems are undergoing rapid transformation under climate change, yet the responses of many marine invertebrates remain vastly understudied. In particular, for many benthic gastropods there is a striking imbalance between their traditional appreciation by shell collectors—and, consequently, their consistent representation in Natural History Collections—and the limited attention they receive in ecological and conservation studies. Focusing on the northeastern Atlantic and the Mediterranean, the cowries Luria lurida, Naria spurca, Zonaria pyrum and the frog-shell Talisman scrobilator are emblematic examples of this knowledge gap, despite being frequently mentioned as species of conservation concern. Using long-term occurrence records spanning more than a century, we modelled past and present distributions of these species and explored their potential responses to future climate scenarios through a multi-temporal Species Distribution Modelling framework. Our results show that intermediate climatic conditions—both in time (2050–2060 vs. 2090–2100) and scenario intensity (moderate SSP2-4.5 versus high-emission SSP5-8.5)—may represent a critical transition phase, leading to habitat contractions without compensatory gains in newly emerging suitable areas. The Mediterranean Sea is expected to increasingly function as a cul-de-sac, with the dominant circulation patterns strongly limiting outward movements towards cooler regions for species relying on planktic larvae for dispersal. Furthermore, incorporating larval sensitivity to reduced pH suggests that large areas of the Atlantic Ocean may actually result unsuitable for larval persistence, substantially reducing the habitat effectively available for completion of the full life cycle; this highlights the need to account for connectivity, life-history constraints and juvenile-stage sensitivity when assessing climate-driven range shifts in shelled organisms with planktic larvae.

Continue reading ‘Will the Mediterranean sea be a cul-de-sac for marine gastropods under climate change?’

A basin-wide assessment of pH changes in the Mediterranean Sea based on reanalysis products

Published 19 June 2026 Science Closed
Tags: , , , ,

Ocean acidification, driven by increasing atmospheric CO2 concentrations, poses a growing threat to marine ecosystems and biogeochemical processes. The Mediterranean Sea, characterized by complex circulation patterns and distinct hydrographic sub-basins, represents a sensitive region for assessing basin-scale pH variability. However, long-term in situ pH observations remain spatially sparse and unevenly distributed, limiting the assessment of coherent spatiotemporal trends across the basin. Here, we present a basin-wide spatiotemporal assessment of pH trends in the Mediterranean using an 18-year biogeochemical reanalysis dataset from the Copernicus Marine Environment Monitoring Service. Our analysis reveals a consistent vertical structuring of pH trends, with negative trends in surface waters and contrasting, often neutral to weakly positive tendencies at depth. The magnitude and vertical extent of these trends vary regionally and are closely linked to local circulation regimes, water-mass formation processes, and remineralization dynamics. In deep-water formation regions such as the Adriatic, Ionian, and Aegean Seas, negative pH trends extend throughout much of the water column, whereas in the Levantine Basin, mesoscale circulation structures confine pH changes primarily to a relatively thin surface layer. These results demonstrate that basin-scale analyses based on high-quality, publicly accessible biogeochemical reanalysis products, such as CMEMS, can provide a spatially integrated perspective on long-term pH variability, complementing existing observational records by bridging spatial and temporal gaps. The framework presented here offers a reproducible approach for systematically assessing depth and region resolved pH trends.

Continue reading ‘A basin-wide assessment of pH changes in the Mediterranean Sea based on reanalysis products’

Physical-chemical gradients, CO2 venting dynamics and microbial community composition in a shallow Mediterranean CO2-rich hydrothermal system

Published 19 June 2026 Science Closed
Tags: , , , , , , , ,

Shallow-water CO2-rich hydrothermal systems provide natural laboratories for studying localized ocean acidification under realistic environmental conditions. Here, we present a multidisciplinary characterization of the Calent mound CO2-rich system (Columbretes Islands, Western Mediterranean), based on oceanographic surveys conducted in 2020 and 2021. Localized pH anomalies were detected directly above active vents, reaching maximum reductions of 1.12 pH units, whereas water-column temperature anomalies were minimal and subsurface sediment temperatures exceeded ambient seawater by 5.67 °C. Gas analyses indicated high CO2 concentrations (0.094 ± 0.008 mol L− 1), with heterogeneous degassing regimes, ranging from sporadic to continuous emissions and an average flux of 189.4 ± 15.4 kg CO2 m− 2 yr− 1 at the active vent field. Vent fluids were significantly enriched in dissolved inorganic nutrients, particularly silicate, phosphate, nitrate+nitrite, and ammonium. Benthic microbial mats hosted metabolically diverse prokaryotic and eukaryotic communities, including hydrothermal-associated taxa such as Zetaproteobacteria, Campylobacterota, and Nitrosophaeria, consistent with iron, sulfur, and ammonia oxididation metabolisms. Several microbial core taxa persisted across years despite shifts in relative abundance. These findings demonstrate that Calent mound sustains an intense yet highly localized biogeochemical environment within the photic zone, where CO2 venting and nutrient inputs jointly influence carbonate chemistry and microbial community structure.

Continue reading ‘Physical-chemical gradients, CO2 venting dynamics and microbial community composition in a shallow Mediterranean CO2-rich hydrothermal system’

Shifts of tentacles-associated prokaryotes of Anemonia viridis along a natural pH gradient

Published 18 June 2026 Science Closed
Tags: , , , , , , , , , ,

Highlights

  • A. viridis tentacle microbiomes were studied under changing natural pH conditions.
  • Notable shifts in the abundance of specific taxa emerged in the acidified sites.
  • Differences in seawater emphasized the host’s unique microbial signature.
  • Rickettsiales predominance suggested a specialized ecological role in symbiosis.
  • Further research is needed to discern the role of microbes for host resilience.

Abstract

Marine hydrothermal vents are extreme environments that naturally select for organisms with strong resistance and the ability to cope with special conditions of acidification. Sea anemones are an interesting example that are able to buffer intracellular pH conditions. In this study, the influence of a natural pH gradient on microbial communities associated with Anemonia viridis (Cnidaria, Anthozoa) tentacles was investigated. We hypothesized that exposure to a natural pH gradient would be associated with changes in the structure and activity of A. viridis-associated microbial communities, potentially contributing to the host’s resilience in hydrothermal environments. Microbial enzymatic activities within anemones’ tentacles were investigated by incubation with fluorogenic compounds. The leucine amino peptidase activity was highest in the tentacles of specimens living in more acidified sites. A microbial biodiversity loss was observed in bacterial symbionts from less acidified to more acidified sites, with a reduction of relative abundance in certain groups (i.e., Planctomycetota, Firmicutes, and Desulfobacterota). Results obtained by a metabarcoding approach provided interesting insights into the taxonomic shifts of the A. viridis holobiont system in naturally acidified environments.

Continue reading ‘Shifts of tentacles-associated prokaryotes of Anemonia viridis along a natural pH gradient’

High-resolution reconstruction of the pH-upregulation and its seasonal drivers in the temperate coral Cladocora caespitosa

Published 12 June 2026 Science Closed
Tags: , , , ,

Ocean acidification (OA) and associated changes in seawater carbonate chemistry, combined with thermal stress, hampers coral calcification. By upregulating pH and dissolved inorganic carbon, corals can optimize their calcification, giving them some resilience to OA. Little is known about the seasonal- and interannual‑scale impacts of thermal stress and OA on pH upregulation and calcification in the temperate coral Cladocora caespitosa, despite it being the only zooxanthellate reef builder in the Mediterranean Sea. δ¹¹B and B/Ca were determined seasonally in C. caespitosa skeletons from two NW Mediterranean sites to reconstruct the effect of seawater temperature and pH on the carbonate chemistry of the coral calcifying fluid (CF), at a bimonthly resolution from June 2013 to August 2017 (Columbretes Islands, Spain), and June 2016 to February 2022 (Villefranche-sur-Mer, France). Cladocora caespitosa displayed a similar pH upregulation strategy to most tropical corals, albeit with an apparently lower sensitivity to seasonal environmental change. Temperature was the main driver of seasonal variability in the CF composition and coral calcification, with seawater pH having a comparatively lower seasonal variability, and acting on longer timescales. While longer coral records and investigations into inter-population variability would still be beneficial in order to fully understand the response of C. caespitosa to environmental change, our records constitute an important first step in understanding the biomineralization strategy of this ecologically important coral species.

Continue reading ‘High-resolution reconstruction of the pH-upregulation and its seasonal drivers in the temperate coral Cladocora caespitosa’

Optimization of UV-Vis spectrophotometer (OCaPI) parameters for measuring the pH and pCO2 of the ocean carbonate system in seawater to assess ocean acidification (Mediterranean Sea)

Published 9 June 2026 Science Closed
Tags: ,

Automating the measurement of carbonate system parameters is essential for improving our understanding of biogeochemical processes in marine regions. The portable OCaPI (Ocean Carbon Parameters Instrument) is designed to perform simultaneous and accurate measurements of hydrogen ion concentration (pH) and partial pressure of carbon dioxide (pCO2)1 in the ocean environment. Optimizing the parameters of the UV-Vis spectrophotometer (integration time, scan-to-average, boxcar) facilitates the quantification of ocean acidification, with significantly improved measurement accuracy and reliability. The results obtained are consistent with existing techniques and offer a simplified approach to data collection, even under challenging conditions. This work, based on design principles, performance, and preliminary results obtained in the Mediterranean Sea, paves the way for the integration of these optimized techniques into long-term monitoring programs. This will contribute to a better understanding of the impacts of climate change on marine ecosystems and to improved management in the face of ocean acidification.

Continue reading ‘Optimization of UV-Vis spectrophotometer (OCaPI) parameters for measuring the pH and pCO2 of the ocean carbonate system in seawater to assess ocean acidification (Mediterranean Sea)’

Microbial communities associated with two populations of the sponge Chondrilla nucula under present and projected climate conditions in the Aegean Sea

Published 25 May 2026 Science Closed
Tags: , , , , , , , ,

This data paper describes bacterial and fungal communities associated with the sponge Chondrilla nucula collected from two Eastern Mediterranean populations (North and South Aegean Sea) and maintained under controlled common-garden conditions simulating present and projected climate scenarios over a period of 3 months. Microbial composition was characterised using two complementary ribosomal marker approaches: Illumina (MiSeq) sequencing of the 16S rRNA gene for Bacteria and Oxford Nanopore (MinION) sequencing of a long 18S-ITS-28S rRNA fragment for Fungi. A total of 24 sponge libraries (3 climate conditions x 2 populations x 4 biological replicates) along with six control libraries (water from three experimental tanks, extraction and PCR blanks) were constructed for each group of microsymbionts. The resulting reads were processed using custom and publicly available bioinformatic pipelines and databases, followed by initial taxonomic assignment. This dataset represents the first fungal community associated with C. nucula and the first bacterial community for this species from the Aegean Sea.

Continue reading ‘Microbial communities associated with two populations of the sponge Chondrilla nucula under present and projected climate conditions in the Aegean Sea’

Combined effects of ammonium and pH on sea urchin embryogenesis: insights for sediment quality assessment

Published 30 April 2026 Science Closed
Tags: , , , , , , , ,

Highlights

  • Reduced pH enhances ammonium toxicity on sea urchin embryos in filtered seawater.
  • In elutriates ammonium is a major driver of P. lividus embryotoxicity.
  • Data support setting ammonium thresholds in sediment quality frameworks.
  • Ocean acidification potentially increases ammonium toxicity for sea urchin larvae.

Abstract

Ammonium is a key component of coastal marine systems, originating from both natural and anthropogenic sources, with possible toxic effects on marine organisms depending on the concentration and pH. This study evaluates, for the first time, the combined effects of ammonium and seawater acidification on early development of the sea urchin Paracentrotus lividus under both laboratory conditions and exposure to environmental matrices derived by dredged sediments from harbor area. Embryos were incubated with increasing concentrations of ammonium in filtered seawater at pH 8.1 and 7.6, as well as in sediment elutriates from the Pescara harbor (Adriatic Sea, Italy), selected as a case study with relevant concentrations of ammonium (0.1–3.5 mg/L). A combined effect between ammonium and pH was observed, with increasing ammonium toxicity by ∼20% at pH 7. Moreover, in sediment elutriates, ammonium affect sea urchin embryo development, with EC50 ranging between 1.388 and 1.538 mg/L NH4+ at pH 8.1 and 7.6, respectively, without significant differences due to pH. Chemical analyses of sediments confirmed low levels of trace metals and organic pollutants, indicating that ammonium is the primary driver of embryotoxicity without a direct toxic effect of other contaminants. The results further underscore the need to integrate ammonium assessment into sediment quality frameworks and for management strategies, particularly in the context of future ocean acidification, to safeguard the early life stages of sensitive marine invertebrates.

Continue reading ‘Combined effects of ammonium and pH on sea urchin embryogenesis: insights for sediment quality assessment’

Unravelling marine benthic functioning shifts under ocean acidification

Published 10 April 2026 Science Closed
Tags: , , , , , , , , , , , , , , ,

Ocean acidification (OA) driven by increasing atmospheric CO2 is altering marine biodiversity. However, impacts of OA on ecosystem functioning at the community level, including calcification, primary production and nutrient uptake, remain largely unknown. Here, we conducted community transplant experiments at natural CO2 vents to assess how declining pH affects marine community species composition, biomass, and key ecosystem processes over time. Our results indicate that community shifts caused by declining pH lead to decreased biomass and calcification rates, while photosynthesis and nutrient uptake rates increased. By leveraging OA field model systems and in situ measurements of ecosystem functioning, this study provides critical insights into how OA-induced biodiversity loss reshapes the structure and functioning of temperate marine coastal ecosystems.

Continue reading ‘Unravelling marine benthic functioning shifts under ocean acidification’

An interpretable machine learning approach for alkalinity reconstruction in the Mediterranean Sea

Published 9 April 2026 Science Closed
Tags: , , ,

Highlights

  • Genetic Programming provides interpretable alkalinity models for Mediterranean Sea.
  • Genetic Programming models capture typical alkalinity patterns and its finer-scale variability.
  • Genetic Programming matches or exceeds linear models while remaining interpretable.
  • Neural networks yield lowest errors but lack model transparency.

Abstract

Ocean acidification has significant impacts on marine ecosystems and human activities, and its understanding relies on an accurate characterization of the marine carbonate system, in which alkalinity plays a central role.

We propose a Machine Learning (ML) approach based on Genetic Programming (GP) to model alkalinity and apply this framework to the surface layers of the Mediterranean Sea. Our framework produces interpretable equations that capture alkalinity typical patterns and its finer-scale variability by inferring its relation with key physical and biogeochemical variables.

Results, supported by quantitative metrics and visual analyses, demonstrate that our method reliably reproduces the spatio-temporal variability of alkalinity with a high level of predictive accuracy when compared with in situ observations. Moreover, we use the derived alkalinity equations to produce gap-free 2D surface alkalinity maps using satellite data. The maps correctly capture spatial gradients, seasonal patterns, and riverine contributions, reinforcing the robustness of the proposed approach.

Continue reading ‘An interpretable machine learning approach for alkalinity reconstruction in the Mediterranean Sea’

Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea

Published 7 April 2026 Science Closed
Tags: , , , , , , , , , ,

The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.

Continue reading ‘Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea’

Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions

Published 30 March 2026 Science Closed
Tags: , , , , , , , , , ,

Background

Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.

New information

This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.

Continue reading ‘Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions’

Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates

Published 24 March 2026 Science Closed
Tags: , , , , , , , ,

Background

Over the past 50 years, the oceans have absorbed over 90% of global warming heat, leading to warming, acidification and declining oxygen levels that are disrupting marine ecosystems and altering species distributions and productivity. The vulnerability of marine organisms to these changes depends on their biological traits, habitat conditions and adaptive capacity, influencing their growth, behaviour and overall population health. Micro-computed tomography (micro-CT) has been previously used for studying the morphological traits of marine invertebrates, which provide important insights into species functionality and responses to climate change and ocean acidification. Micro-CT enables non-destructive, high-resolution 3D analysis of internal and external structures, allowing precise measurement of traits such as density, porosity and morphology that are valuable for climate change research.

New information

The present manuscript describes micro-CT imaging datasets generated to investigate the effects of climate change on the morphological structure of two benthic marine invertebrates: the low-motility gastropod Hexaplex trunculus (Linnaeus, 1758) and the sessile sponge Chondrilla nucula Schmidt, 1862. Both species are considered particularly vulnerable to environmental stressors. To date, no study has investigated the effects of ocean warming and acidification on sponges using micro-CT technology. Using a common garden experimental design, individuals from geographically distinct populations exposed to different natural environmental regimes were subjected to combined warming and acidification scenarios to assess their morphological responses and adaptive capacity.

Continue reading ‘Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates’

Coulometric readout of ion-selective electrodes for an aquatic pH probe

Published 17 March 2026 Science Closed
Tags: , , ,

Ion-selective electrodes are widely used for the detection of ions in aqueous solutions such as natural waters. Their origin traces back to 1909 with the invention of the pH glass electrode. Nowadays, routine pH measurements are still performed by potentiometric measurements with glass electrodes. The phase-boundary potential difference at the glass membrane-sample interface, measured against a reference electrode, relates to solution pH following the Nernst equation. While being user-friendly, they suffer from multiple drawbacks. Firstly, their sensitivity is intrinsically dictated by the Nernst equation and is limited to 59.2 mV/pH at 25 °C. This might not be sufficient for applications where high precision pH sensing is required, such as ocean acidification monitoring. Secondly, a Nernstian response can only be obtained if all the other potential differences in the overall electrochemical cell are constant over the whole experimental procedure. This is not the case when, for example, the temperature or the ionic strength of the sample change during the measurement routine. The former influences the glass electrode itself, while the latter rather affects the reference electrode via liquid junction potential variations.

This thesis presents enhancements to the potentiometric experimental setup for pH sensing with glass or polymeric membrane pH electrodes, achieved through the integration of electronic components, chemical symmetry and open liquid junctions. A dynamic electrochemical readout called constant potential coulometry is explored for in situ pH sensing in coastal waters by implementation in a submersible probe deployed in the Krka River estuary in April 2025.

Continue reading ‘Coulometric readout of ion-selective electrodes for an aquatic pH probe’

Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents

Published 16 March 2026 Science Closed
Tags: , , , , , ,

Seagrass meadows are natural carbon sinks, yet the effect of ocean acidification on their carbon burial capacity remains poorly understood. Here we investigated natural carbon dioxide vents in Ischia, Italy to assess how seawater pH influences carbon burial in an area dominated by the seagrass Posidonia oceanica. Organic carbon burial rates (mean ± standard error) between 1954 – 2021 were low under ambient conditions (1.5 ± 0.5 g m-2 yr-1) but increased sharply under acidified conditions (7 ± 1 g m-2 yr-1), reaching sevenfold higher values under extreme acidification (10 ± 3 g m-2 yr-1). Stable isotopes suggest that these patterns reflect changes in the relative contribution of seagrass, macroalgae, and epiphytes to buried carbon. These findings reveal that ocean acidification can substantially alter coastal carbon cycling, potentially through shifts in community composition, with important implications for understanding past and future feedbacks between seagrass ecosystems and the marine carbon cycle.

Continue reading ‘Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents’

‘Irreversible loss’: how climate change is threatening Europe’s sunken civilisations

Published 11 March 2026 Press releases Closed
Tags: ,

Climate change is endangering the health of Europe’s oceans, and it’s not just marine life that is affected.

A new study warns that precious underwater cultural heritage is being threatened by ocean acidification.

The research found that materials that make up many archaeological treasures are at risk of deterioration when water pH levels drop.

The research, coordinated by the University of Padua in Italy, examined how ocean acidification, a direct consequence of climate change, can accelerate the decay of submerged archaeological sites.

The scientists studied how quickly historical materials deteriorate through dissolution and biological decay in marine environments, and then integrated these findings with large-scale climate models, lead researcher Luigi Germinario explains.

The results were concerning. While stone degradation was minimal in pre-industrial times and remains relatively limited today, rising emissions could trigger an exponential increase in deterioration rates.

These changes would be “irreversible over the coming decades and centuries, influenced by the materials’ properties and shifting dynamics of biocolonisation” – the growth of microorganisms on the surfaces of submerged structures – Germinario told Italian national newspaper La Repubblica.

The study, published in Communications Earth & Environment, warned that “ocean acidification will pose a severe challenge to protecting underwater cultural heritage, making conservation and adaptation policies more urgent than ever.”

Continue reading ‘‘Irreversible loss’: how climate change is threatening Europe’s sunken civilisations’

Subscribe

Search

  • Reset

OA-ICC Highlights

Resources