Reef-building corals and coralline algae form the calcium carbonate frameworks that underpin tropical coral reefs, yet in some locations, coral cover has declined by ~50% in recent decades due to marine heatwaves and other stressors. Identifying refugia environments, such as upwelling systems, that may buffer stress, promote recovery, and could enhance resilience by promoting physiological plasticity that supports thermotolerance is therefore critical. Here, we compared benthic community composition, coral percent cover, and photophysiology between an upwelling location in the Gulf of Papagayo and a non-upwelling location in Sámara on the Pacific coast of Costa Rica. Waters in Papagayo were cooler, more acidic, and had higher chlorophyll-a concentrations. Reefs at this location exhibited higher crustose coralline algae, higher sea urchin abundance, and lower macroalgae cover, compared to Sámara. Papagayo also showed higher stony coral cover, driven by Pocillopora spp., while Sámara was dominated by massive, heat-tolerant Porites spp. Photophysiological parameters were significantly different between locations. Specifically, photosynthetic efficiency (Fv′/Fm′) was 10–45% higher, and maximum photosynthetic rate (Pmax) was 20–40% lower in corals from Papagayo than in those from Sámara. These results reveal that two locations differing in environmental regime within a relatively small geographic area also differ in coral community composition and photophysiological features. Although further research is needed to resolve whether these environmental contrasts shape the observed biological differences, the observed patterns are consistent with the hypothesis that such regimes may support reef persistence or refugia, providing a basis for future work to test this hypothesis directly.
Continue reading ‘Coral reef community structure and photophysiology differ between upwelling and non-upwelling locations on the Pacific Coast of Costa Rica’Posts Tagged 'photosynthesis'
Coral reef community structure and photophysiology differ between upwelling and non-upwelling locations on the Pacific Coast of Costa Rica
Published 28 August 2026 Science Leave a CommentTags: biological response, community composition, corals, echinoderms, field, North Pacific, otherprocess, photosynthesis, physiology
Calcium carbonate formation in coastal macroalgal ecosystems via multiple pathways
Published 24 August 2026 Science Leave a CommentTags: algae, biological response, BRcommunity, community composition, otherprocess, photosynthesis, physiology, review
Calcium carbonate formation in coastal macroalgal ecosystems via multiple pathways
Highlights
- Focused on a novel inorganic carbon sequestration pathway of non-calcifying macroalgae.
- Clarified algae-bacteria synergistic driving mechanism for calcium carbonate precipitation.
- Systematically sorted out potential mineralizing microbial taxa within the phycosphere and their core metabolic pathways.
Abstract
Macroalgae are dominant primary producers that drive carbon sequestration in coastal ecosystems. Macroalgal carbon sequestration primarily refers to the long-term storage of macroalgae-derived organic carbon in the ocean. However, calcium carbonate (CaCO3) formation is frequently observed in non-calcifying macroalgal environments, suggesting the existence of an overlooked inorganic carbon process in macroalgal ecosystems. Here, we introduce multiple pathways that may drive CaCO3 formation in macroalgal ecosystems. These include the effects of macroalgal photosynthesis and carbon-concentrating mechanisms on the seawater carbonate system, the role of phycosphere interfacial properties in facilitating CaCO3 nucleation, and the macroalgae-bacteria synergy that promotes CaCO3 formation. We identified several current knowledge gaps—the unclear carbon sequestration or source effect of CaCO3 formation in macroalgal ecosystems and the stability of CaCO3 minerals in macroalgal ecosystems—that require further investigation. This review advances the understanding of macroalgal carbon cycling beyond organic pathways and emphasizes the importance of a comprehensive assessment of macroalgal carbon sequestration, including that of inorganic carbon.
Short-term pH variability reshapes phytoplankton and microzooplankton communities in the northern Indian Ocean
Published 17 August 2026 Science Leave a CommentTags: biological response, community composition, Indian, laboratory, otherprocess, photosynthesis, physiology, phytoplankton
Phytoplankton and microzooplankton (MZP) are key components of marine food webs, driving carbon transfer through the microbial loop. Short-term laboratory microcosm bottle incubations using seawater from the Bay of Bengal (BoB) and Arabian Sea (AS) in 2022 examined the effects of reduced pH. Phytoplankton biomass (Chl-a) remained stable or increased by up to 12% under low pH, suggesting reduced grazing or improved prey quality. MZP diversity (Shannon index, H′) showed basin-specific responses. In the BoB (Exps. 1–2), H′ ranged 2.00–3.70 with high evenness (J′ = 0.93–1.00) and slight declines under medium acidification (ΔpH = 0.2). In contrast, the AS (Exps. 3–4) showed wider variability (H′ = 0.00–3.63) and greater sensitivity, with sharp diversity losses under stronger acidification (ΔpH = 0.4). AS assemblages showed pronounced richness declines (D′ = 2.85–0.00), whereas BoB communities remained stable. Regional and pH-related differences were linked to shifts in ciliates and dinoflagellates. Autotrophic bacteria sustained under low pH, while heterotrophic bacteria increased later, indicating altered microbial-loop functioning. Overall, pH, chlorophyll-a, and heterotrophic bacteria structured the community, accounting for > 65% of the variation. Thus, short-term acidification reshapes MZP assemblages and may modify trophic interactions across the northern Indian Ocean.
Continue reading ‘Short-term pH variability reshapes phytoplankton and microzooplankton communities in the northern Indian Ocean’The responding mechanisms of Nannochloropsis oceanica to high CO2 and the regulating functions of H+-PPase
Published 31 July 2026 Science ClosedTags: algae, biological response, laboratory, molecular biology, photosynthesis, physiology
Highlights
- Cytoplasmic pH homeostasis was critical for N. oceanica to tolerate 5% CO2.
- The tolerant mechanisms involved multiple physiological-biochemical processes.
- H+-PPase was the central regulator for alleviating cytoplasmic acidification.
- avp1 overexpression improved cytoplasmic pH regulation by raising H+-PPase activity.
Abstract
High CO2 tolerance microalgae screen/breeding shows the urgent research priority when applying microalgae for flue gas CO2 sequestration. In this study, we chose the important resource microalgae Nannochloropsis oceanica as the target organism, the regulatory mechanisms of N. oceanica were elucidated under 5% and 20% high CO2 conditions, and the function of key regulating gene avp1 encoding H+-PPase was further explored. The results showed N. oceanica was tolerant to the 5% CO2 that maintained intracellular pH homeostasis, while severe cytoplasmic acidification was occurred under the 20% CO2 condition. Integrated physiological, biochemical, and transcriptomic analysis revealed that P-ATPase and H+-PPase activities were enhanced at 4 h and 4 d under the 5% CO2 condition, respectively. Concurrently, the reprogramming of organic acid metabolism and maintenance cellular energy supply additionally mitigated intracellular acidification. Further functional validation showed that overexpression of avp1 enhanced H+-PPase activity, increased cytoplasmic pH values, promoted pigments accumulation and growth of N. oceanica under the high CO2 condition. Therefore, this study clarified the working mode of N. oceanica to tolerant high CO2 and cytoplasmic acidification, and firstly timely proved the function of avp1, provided important data basis and gene candidates for the research of applying microalgae to CO2 sequestration.
Continue reading ‘The responding mechanisms of Nannochloropsis oceanica to high CO2 and the regulating functions of H+-PPase’pH–salinity-driven regulation in carbon utilization kinetics of the intertidal seagrass Zostera japonica along China’s coastline
Published 27 July 2026 Science ClosedTags: biological response, BRcommunity, field, laboratory, methods, morphology, North Pacific, phanerogams, photosynthesis, physiology
Highlights
- We innovatively define two biophysical parameters (pH change rate and acceleration) of Zostera japonica photosynthesis.
- pH change acceleration is sensitive to the regulation of carbon utilization pathways during Z. japonica photosynthesis.
- A progressive pH–salinity-driven regulation mode of carbon utilization pathways in Z. japonica photosynthesis is summarized.
- The impact of ocean acidification and alkalization on seagrass is characterized from a new biophysical standpoint.
Abstract
Seagrass carbon concentration mechanisms are modulated by seawater pH and salinity, yet their progressive regulation in photosynthetic inorganic carbon utilization pathways remain poorly characterized. This study novelly mathematically characterized first-order (pH change rate) and second-order (pH change acceleration) derivatives from pH-drift experiments in the intertidal seagrass Zostera japonica along China’s coastline. The pH change-based method effectively highlights the dissolved inorganic carbon (DIC) utilization and biomass accumulation of seagrass, while pH change acceleration is sensitive to the progressive switch of DIC utilization pathways during Z. japonica photosynthesis. As pH increases, six significant regulations emerge that have ecophysiological significance: a. primary regulation via reaching the CO2 compensation point; b. extracellular carbonic anhydrase (exCA) activity dropping to negligible levels; c. diminished efficiency of proton pump-mediated extracellular acidification in supplying CO2; d. regulation via reaching the bicarbonate saturation point; e. regulation via reaching the bicarbonate compensation point; and f. regulation via enhanced respiratory CO2 into seawater temporarily stimulating photosynthesis as a feedback. We summarize a progressive and universal pH–salinity-driven regulation mode reflecting different combinations of DIC utilization pathways and their respective intensities. Specifically, seawater pH modulates the mode’s fluctuating thresholds, while salinity governs the amplitude. Unexpectedly, elevated salinity serves as an effective stimulant for Z. japonica to maintain strong DIC utilization intensity in high pH (> 9.1) environments. Ocean acidification could increase pH change acceleration by 166%, enhancing carbon fixation, whereas artificial ocean alkalinity enhancement (Ca(OH)2 supplementation and olivine-seawater weathering) could reduce it by 165% and 105%, respectively, risking mortality of Z. japonica. Additionally, the salinity-dependent braking point (where acceleration drops to zero) serves as a critical threshold for seagrass photosynthesis and a new factor for transplantation-based restoration.
Continue reading ‘pH–salinity-driven regulation in carbon utilization kinetics of the intertidal seagrass Zostera japonica along China’s coastline’Response of Zostera japonica rhizosphere bacteria to ocean acidification
Published 24 July 2026 Science ClosedTags: biological response, community composition, laboratory, molecular biology, North Pacific, otherprocess, phanerogams, photosynthesis, prokaryotes
Abstract
Amidst global climate change, the escalating atmospheric CO2 levels have intensified ocean acidification (OA), significantly impacting the structure and function of marine ecosystems. Seagrass beds, representative nearshore ecosystems, play a pivotal role in carbon sequestration, biodiversity preservation, and nearshore environmental equilibrium. Rhizosphere microorganisms within seagrass beds, essential components of the ecosystem, drive material cycling and energy flow. Their community structure and functions demonstrate heightened sensitivity to environmental variations. While previous studies have primarily focused on the effects of ocean acidification on seagrass hosts, limited attention has been given to the rhizosphere. Therefore, this study selected Zostera japonica as the focal species and systematically evaluated changes in the structure and function of the rhizosphere bacterial community across varying acidification levels (400 ppm, 1,000 ppm, 2,000 ppm CO2) within an ocean acidification context. The results revealed a significant decline in the richness and diversity of the rhizosphere bacterial community under acidification, accompanied by shifts in community composition characterized by an increase in the relative abundance of Bacteroidota and Tenacibaculum with escalating acidification levels. In high acidification conditions, bacterial network interactions exhibited a trend toward simplification; yet the number of key taxonomic units increases, and there was a shift in community assembly from stochastic to deterministic processes. Functional predictions indicated the enhancement of microbial carbon sequestration and nitrogen fixation under acidification, while denitrification and specific sulfur metabolism pathways were inhibited. This implies that in acidified environments, the rhizosphere bacterial community may enhance carbon and nitrogen fixation to uphold nutrient supply.
Importance
Against the background of escalating global climate change and ocean acidification, seagrass beds, as crucial blue carbon sink ecosystems, face formidable challenges to their ecological functions and stability. Rhizosphere microorganisms of seagrasses, serving as the “second genome” of the seagrass host, play a central role in material cycling, nutrient supply, and system stability within seagrass beds. They are a key biological component that supports seagrass adaptation to environmental changes. Therefore, investigating the response and adaptation mechanisms of seagrass rhizosphere bacterial communities under ocean acidification is essential for deepening our understanding of the stability and resilience of seagrass bed ecosystems.
Continue reading ‘Response of Zostera japonica rhizosphere bacteria to ocean acidification’Water mass-driven variations in primary production and bacterial respiration during the spring bloom in the Fram Strait
Published 23 July 2026 Science ClosedTags: Arctic, biological response, community composition, field, laboratory, modeling, multiple factors, otherprocess, oxygen, photosynthesis, primary production, prokaryotes, regionalmodeling, respiration
Highlights
- Remote sensing indicates declining bloom in cold and developing bloom in warm water
- Primary production peaks in polar and arctic surface water masses
- Bacterial production is coupled to primary production despite thermal sensitivity
- Oxygen-based community respiration is highest in warmer water masses
- Oxygen-based and INT-based respiration estimates differ by an order of magnitude
Abstract
The Fram Strait is the primary oceanic gateway to the Arctic Ocean and has highly dynamic oceanographic conditions. Oceanographic conditions can shape community compositions, which is increasingly shown using molecular studies, but rate measurements remain scarce, especially for respiration in the Arctic Ocean. Here, we assessed primary production (PP), bacterial production (BP), bacterial abundances (BA), and community respiration (CR) using Winkler titrations and in vivo Iodo-Nitro-Tetrazolium (INT) reduction within the upper 50 m across water masses of the Fram Strait that had varying bloom conditions in spring 2021. We complemented in situ observations with remote sensing of sea surface temperature (SST) and chlorophyll-a (SSC) to infer bloom phenology in warm (θ>2°C), intermediate (2>θ>0°C), and cold (θ<0°C) waters using remote sensing machine-learning. In the cold, nutrient-rich surface waters, a subsiding spring bloom was associated with elevated PP, BP, and BA alongside a high temperature sensitivity (Q10) that indicates active microbial turnover. In contrast, the warm Atlantic-influenced waters exhibit a relatively lower PP but moderate cell-specific BP, suggesting bacterial maintenance metabolism under pre-bloom conditions. Notably, bacterial respiration (BR) estimates differed by 5- to 80-fold between the Winkler and in vivo INT methods. Although the true BR likely lies between these estimates, our results highlight the substantial microbial activity and underscore the need for more accurate BR measurements in Arctic studies.
Continue reading ‘Water mass-driven variations in primary production and bacterial respiration during the spring bloom in the Fram Strait’Changes in photosynthesis and grazing facilitate growth of a mixotrophic protist under ocean acidification and warming
Published 22 July 2026 Science ClosedTags: algae, biological response, BRcommunity, growth, laboratory, multiple factors, photosynthesis, physiology, protists, temperature
Summary
- Mixotrophic protists capable of both photosynthesis and phagotrophy are key members of marine plankton communities. Yet, little is known about their responses to the combination of ocean acidification and warming.
- A marine mixotrophic chrysophyte, Ochromonas CCMP2951, was subjected to two levels of pCO2 (300 and 800 ppm, resulting in pH of 8.2 and 7.8) and temperature (21°C and 26°C) in a factorial design.
- Enhanced growth rates were observed in both the high CO2 and high temperature treatments, while cell size significantly decreased with temperature. Strongly decreased cellular phosphorus content led to increased N : P and C : P ratios of Ochromonas with temperature. Furthermore, warming increased grazing rates, while elevated CO2 reduced the Chl content but increased photosynthetic carbon acquisition, albeit only at low temperature. The combination of warming and elevated CO2 had antagonistic effects on the balance between autotrophic and heterotrophic carbon acquisition, keeping the net role of this mixotroph in the marine carbon cycle stable.
- Altogether, both the direct stimulation of growth and the indirect effects of altered stoichiometry may favor mixotrophs under future ocean conditions. However, their contribution to future carbon cycling in complex natural communities will need further study.
Graphical Abstract
Grazing rates of Ochromonas CCMP2951 expressed as carbon obtained per mean cell volume (a) and Caut/het-photosynthetically fixed carbon divided by carbon obtained through grazing (b) in the four experimental treatments.
Coastal phytoplankton response to acidification and warming under differing levels of nutrient availability
Published 12 June 2026 Science ClosedTags: biological response, community composition, mesocosms, multiple factors, nutrients, otherprocess, photosynthesis, phytoplankton, South Pacific
Ocean acidification and warming will alter phytoplankton biomass and composition, yet despite numerous studies, there are few consistent responses on which to base predictions. To determine the responses of chlorophyll-a and phytoplankton size and composition to predicted lower pH (−0.33 to −0.5) alone, and also combined with elevated temperature (+2.5–3.5 °C), two mesocosm experiments were carried out in austral spring and autumn in temperate New Zealand coastal waters. Lower pH alone had no effect on chlorophyll-a in either experiment and, as the treatment pH was lower than the pH minimum recorded in a parallel four-year time series, this lack of response in chlorophyll-a was not attributable to prior in situ exposure. Conversely, chlorophyll-a increased under lower pH and warming in both experiments, with the large (>20 µm) phytoplankton size fraction showing opposing responses under nutrient deplete and replete conditions. Diatom biomass also increased in both treatments when nutrient availability was maintained, with a dominant pennate species Cylindrotheca clostridium emerging. The results highlight the value of contextual time series for experimental interpretation, and also the importance of assessing warming and acidification together using regionally representative nutrient concentrations, for prediction of coastal phytoplankton response to climate change.
Continue reading ‘Coastal phytoplankton response to acidification and warming under differing levels of nutrient availability’Seasonal upwelling shapes coral reef community structure and photophysiology on the Pacific Coast of Costa Rica
Published 3 June 2026 Science ClosedTags: algae, biological response, community composition, corals, echinoderms, field, modeling, North Pacific, otherprocess, photosynthesis, physiology, regionalmodeling
Reef-building corals form the calcium-carbonate frameworks that underpin tropical coral reefs, yet global coral cover has declined by ~50% in recent decades, due to marine heatwaves and other stressors. Identifying refugia environments, such as upwelling systems, that buffer stress, promote recovery, and enhance resilience by promoting physiological plasticity that supports thermotolerance is therefore critical. Here, we compared benthic community composition, coral percent cover, and photo-physiology between an upwelling location in the Gulf of Papagayo and a non-upwelling location in Sámara on the Pacific coast of Costa Rica. Waters in Papagayo were cooler, more acidic, and richer in chlorophyll a. Reefs at this location exhibited higher crustose coralline algae, higher sea urchin cover, and lower macroalgae cover, compared to Sámara. Papagayo also showed higher stony coral cover, driven by Pocillopora spp., while Sámara was dominated by massive, heat-tolerant Porites spp.. When significant, photophysiological measurements showed 9.7 – 44.5% higher photosynthetic efficiency (Fv’/Fm’) in Papagayo corals and 19.94 – 42.75 % higher maximum photosynthetic rates (Pmax) in Sámara corals. These results highlight how contrasting environmental regimes within a relatively small geographic area can shape distinct coral community compositions and photophysiological strategies, with implications for identifying areas of reef persistence or refugia.
Continue reading ‘Seasonal upwelling shapes coral reef community structure and photophysiology on the Pacific Coast of Costa Rica’Carbon allocation strategy of Thalassiosira weissflogii in response to elevated pCO2
Published 25 May 2026 Science ClosedTags: adaptation, biological response, laboratory, molecular biology, otherprocess, photosynthesis, physiology, phytoplankton
Diatoms are of significance in the marine ecosystem, playing a pivotal role in the sustenance of marine life and the transfer of carbon from the surface ocean to deeper waters. Although numerous studies have investigated the effects of elevated carbon dioxide (CO2) on marine diatoms across both short- and long-term adaptation scales, the molecular mechanisms governing chitin metabolism in response to ocean acidification remain poorly understood. In this study, we employed an integrated approach combining transcriptomic, metabolomic, and physiological analyses to examine the marine diatom Thalassiosira weissflogii following 40-day acclimation to high-CO2 conditions. Physiological studies have demonstrated that ocean acidification has the capacity to result in an augmentation of the C/N ratio, chitin content, maximum PSII quantum yield (Fv/Fm), and photosynthetic pigment content of T. weissflogii. Analysis of chlorophyll fluorescence dynamics further demonstrated enhanced primary photochemical efficiency of PSII in the acidified treatment group. Consistent with this, the transcriptome results also showed that the photosynthesis-related pathways were upregulated to meet the increased material and energy requirements after adaptation to elevated CO2 levels. More importantly, it was determined that acidification treatment resulted in the upregulation of chitin synthesis and the downregulation of chitin degradation in T. weissflogii, consequently leading to an augmentation in chitin content. These findings indicate that ocean acidification (high CO2, low pH) prompts T. weissflogii to prioritize the allocation of carbon resources to the synthesis of chitin. The synthesis of chitin may reinforce cell wall formation as an adaptive response to ocean acidification. Our research provides new insights into the marine acidification adaptation strategies of T. weissflogii.
Continue reading ‘Carbon allocation strategy of Thalassiosira weissflogii in response to elevated pCO2’Seawater acidification accelerates growth but hastens decline in batch cultures of the marine diatom Thalassiosira pseudonana
Published 22 April 2026 Science ClosedTags: biological response, growth, laboratory, photosynthesis, physiology, phytoplankton
Diatoms are characterized by rapid cell division and a high capacity to adapt to environmental variability, and some species can form blooms when environmental conditions are favorable. Previous studies have largely focused on the bloom development phase, during which biomass accumulates rapidly, whereas the decline phase-despite its critical role in carbon export and microbial loop dynamics-has received far less attention. Here, we tracked changes in cell density and inorganic carbon utilization characteristics throughout the entire course of a simulated Thalassiosira pseudonana bloom under ambient (420 μatm) and elevated pCO2 (1000 μatm) conditions. Inhibitors of carbonic anhydrase and direct bicarbonate transporters were applied to investigate the characteristics of inorganic carbon utilization. The relationship between photosynthetic rate and inorganic carbon concentration was measured to assess inorganic carbon affinity. The simulated T. pseudonana bloom was characterized by rapid cell density accumulation, reaching a peak within 10 days, followed by a rapid decline without a distinct stationary phase. As the bloom progressed, photosynthetic rate and the maximum quantum yield of photosystem II declined, whereas the inorganic carbon affinity increased. Elevated CO2 enhanced growth and maximum quantum yield during the acceleration phase but resulted in an 86% higher fitted death rate during the decline phase. Regarding the relationship between photosynthetic rate and dissolved inorganic carbon concentration, elevated CO2 increased the maximum photosynthetic rate and half-saturation constant only during the acceleration phase. Collectively, these results indicate that seawater acidification can influence both biomass accumulation and decline intensity in diatom blooms, with potential consequences for carbon sequestration and its redistribution among biogeochemical pools.
Continue reading ‘Seawater acidification accelerates growth but hastens decline in batch cultures of the marine diatom Thalassiosira pseudonana’Unravelling marine benthic functioning shifts under ocean acidification
Published 10 April 2026 Science ClosedTags: algae, biological response, BRcommunity, calcification, community composition, crustaceans, field, Mediterranean, mollusks, morphology, otherprocess, photosynthesis, physiology, porifera, respiration, vents
Ocean acidification (OA) driven by increasing atmospheric CO2 is altering marine biodiversity. However, impacts of OA on ecosystem functioning at the community level, including calcification, primary production and nutrient uptake, remain largely unknown. Here, we conducted community transplant experiments at natural CO2 vents to assess how declining pH affects marine community species composition, biomass, and key ecosystem processes over time. Our results indicate that community shifts caused by declining pH lead to decreased biomass and calcification rates, while photosynthesis and nutrient uptake rates increased. By leveraging OA field model systems and in situ measurements of ecosystem functioning, this study provides critical insights into how OA-induced biodiversity loss reshapes the structure and functioning of temperate marine coastal ecosystems.
Continue reading ‘Unravelling marine benthic functioning shifts under ocean acidification’Physiological responses of Swedish maerl to ocean acidification and warming
Published 17 March 2026 Science ClosedTags: algae, biological response, calcification, laboratory, multiple factors, North Atlantic, photosynthesis, respiration, temperature
Maerl, (Corallinales, Rhodophyta), are free-living calcareous algae found in coastal ecosystems. They form biogenic beds with complex structures in which other species can find refuge or on which other species can settle, which highlights their importance as an ecosystem. While many species have been investigated worldwide, maerl from the Swedish west coast are poorly studied. This report investigated both acidification and warming impacts on different physiological functions of Swedish maerl, including photosynthesis, respiration and calcification. The maerl were exposed to different pH levels and temperatures in both light and dark conditions to determine their physiological thresholds, where photosynthesis and respiration were measured via oxygen fluctuations, photosynthetic efficiency via PAM fluorometry and calcification via alkalinity titrations. It was found that neither photosynthetic nor respiratory oxygen exchange showed positive or negative trends when exposed to changes in pH. On the contrary, photosynthesis peaked at the natural ambient temperature of 16°C and respiration increased with increasing temperature. Photosynthetic efficiency also did not show any trends to pH changes. However, calcification showed a significant (p < 0.05) negative response to pH in both light and dark conditions, with the response more severe in dark conditions. This suggests that decreasing pH may induce skeletal dissolution, and that photosynthesis could help buffer internal responses to external conditions. Carbonate production at ambient conditions in the light was calculated to be 556 ± 54 g CaCO3 m-2 yr-1, showing that Swedish maerl are just as, if not more, productive than maerl found elsewhere. Overall, this report showed that photosynthetic and respiratory thresholds may not be reached with acidification and that temperature increases could instead have much more severe consequences. It also showed that calcification thresholds will be met sooner rather than later, depending on acidification rates, in darker conditions for maerl found in temperate and possibly polar regions.
Continue reading ‘Physiological responses of Swedish maerl to ocean acidification and warming’Multi-level holobiont dysregulation increases the ecological risk of combined ocean acidification and benzo[a]pyrene pollution to the reef-building coral Porites lutea
Published 17 March 2026 Science ClosedTags: archaea, biological response, BRcommunity, community composition, corals, laboratory, molecular biology, multiple factors, North Pacific, otherprocess, photosynthesis, physiology, phytoplankton, prokaryotes, toxicants
Highlights
- Combined ocean acidification and BaP induce holobiont dysregulation, evidencing by a decoupled Symbiodiniaceae proliferation and a collapse of the archaeal Nanoarchaeota-Halobacterota symbiosis.
- The coral host shifts its defense strategy from antioxidant capacity to cellular homeostasis, while the bacterial community increases functional redundancy, revealing a costly acclimation mechanism.
- The multi-level dysregulation demonstrates an underestimated ecological risk, highlighting that current single-stressor risk assessments are inadequate for protecting corals under complex pollution scenarios.
Abstract
Reef-building corals are increasingly threatened by the combined effects of global climate change and localized organic pollutants. However, the holistic impacts of co-exposure to ocean acidification (OA) and benzo[a]pyrene (BaP) on coral holobionts remain poorly understood. Here, we investigated the multi-level responses of the reef-building coral Porites lutea to short-term (7-day) exposure to OA (pH 7.80), BaP (10 µg/L), and their combination, by integrating physiological measurements with microbiome profiling (ITS2 and 16S rRNA). We found that combined stress was associated with a dysregulated response in Symbiodiniaceae, characterized by a significant increase in cell density without a parallel rise in chlorophyll content, suggesting a possible compensatory but inefficient proliferation response. Despite this, the dominant symbiont Cladocopium C15 remained stable. The bacterial diversity increased (e.g., enrichment of Ruegeria and Acanthopleuribacter, decline of Endozoicomonas), which may suggest enhanced functional redundancy, while the archaeal community was significantly restructured, most notably a marked decline of the putative obligate Nanoarchaeota–Halobacterota symbiosis. At the host level, combined stress was associated with suppressed antioxidant enzyme activities (SOD/POD) but upregulated genes related to protein folding (Hsp90) and calcium homeostasis (NCX1, VAMP4). These findings suggest a complex holobiont reconfiguration under combined stress, involving a stabilized core symbiont, altered microbiomes, and a shifted host defense strategy. Our study suggests that the ecological risk of combined OA and organic pollution may not be extrapolated from single-stressor responses, indicating the need to incorporate multi-stressor frameworks into coral reef risk assessments.
Continue reading ‘Multi-level holobiont dysregulation increases the ecological risk of combined ocean acidification and benzo[a]pyrene pollution to the reef-building coral Porites lutea’Sex-specific physiological-biochemical and multi-omics responses of Sargassum thunbergii to ocean acidification
Published 10 March 2026 Science ClosedTags: algae, biological response, laboratory, molecular biology, North Pacific, photosynthesis, physiology
Highlights
- A multi-omics study on sexual dimorphism of macroalgae under OA.
- Male S. thunbergii adopted a growth-oriented strategy under OA.
- Female S. thunbergii showed a defense-oriented survival strategy under OA.
- Fundamental trade-off between growth and defense underlay sex-specific responses.
Abstract
Ocean acidification (OA), driven by increasing atmospheric CO2 concentrations, poses significant threats to the ecologically important intertidal macroalgae. Multiple previous studies have indicated species-specific responses to OA, the sex-specific physiological-biochemical responses and underlying molecular mechanisms in dioecious macroalgae remain poorly understood. In this study, we investigated the responses of male and female Sargassum thunbergii to acidification treatment (2000 ppm CO2) by integrating physiological-biochemical, transcriptomic, and metabolomic analyses. Both sexes maintained photosynthetic performance, with increased maximum relative electron transport rates (rETRmax). Males exhibited a growth-oriented strategy, characterized by higher accumulation of storage compounds like triglycerides and up-regulation of genes related to the photosynthesis and biosynthesis pathways. In contrast, females displayed a survival-oriented strategy, with reduced carbon storage, increased soluble protein and phenolic substance contents, and up-regulation of genes related to defense- and stress-response pathways. These findings provided physiological-biochemical and molecular evidence for a growth and defense trade-off between male and female S. thunbergii under acidification treatment. Our study provided the mechanistic insights into the sex-specific responses of marine macroalgae to global climate change and highlighted the importance of accounting for sexual dimorphism in predicting the ecological resilience of intertidal macroalgae populations under future ocean conditions.
Continue reading ‘Sex-specific physiological-biochemical and multi-omics responses of Sargassum thunbergii to ocean acidification’Colony formation sustains the global competitiveness of nitrogen-fixing Trichodesmium under ocean acidification
Published 5 March 2026 Science ClosedTags: biological response, growth, individualmodeling, modeling, nitrogen fixation, photosynthesis, physiology, prokaryotes
Anthropogenic carbon dioxide emissions drive ocean acidification. Trichodesmium, a key marine nitrogen-fixing cyanobacterium, displays contrasting growth responses to ocean acidification across morphotypes: negative in filamentous free trichomes but neutral or positive in colonies. However, lacking mechanistic understanding for these discrepancies has impaired our ability to predict Trichodesmium’s ecophysiological response. Here, we develop ecophysiological models to underpin mechanisms behind these divergent responses. For free trichomes, ocean acidification reduces nitrogen-fixing enzyme activity and photosynthetic energy production. In colonies, however, it alleviates copper and ammonia toxicity within the microenvironment—likely synergizing with enhanced iron acquisition—thereby outweighing minor benefit from relieved inorganic carbon limitation in the colony center. Projections suggest that globally, ocean acidification will reduce nitrogen fixation of trichomes by 16 ± 6% but increase that of colonies by 19 ± 24% within this century. By resolving morphotype-specific mechanisms, our study clarifies Trichodesmium’s adaptive strategies for sustaining its competitiveness and biogeochemical impacts in the changing ocean.
Continue reading ‘Colony formation sustains the global competitiveness of nitrogen-fixing Trichodesmium under ocean acidification’Resilience of the macroalgae Gongolaria barbata under ocean acidification: physiological responses and restoration perspective
Published 3 February 2026 Science ClosedTags: algae, biological response, laboratory, Mediterranean, mesocosms, morphology, photosynthesis, physiology, reproduction, respiration
The increasing CO2 concentration is a major cause of the climate change phenomenon. Concurrently, the same increase is leading to ocean acidification (OA), which is projected to decrease seawater pH by 0.4 units by 2100. Here we investigated the potential impacts of OA on the canopy-forming brown macroalga Gongolaria barbata from the Venice Lagoon. One-year-old individuals were maintained in mesocosms under two pH levels: 8.1 (current ambient value) and 7.7 (the end-of-the-century value predicted under the current scenario of anthropogenic CO2 emissions). The physiological responses of the algae were assessed during the experiment in terms of oxygen production and consumption, and maximal PSII photochemical efficiency. At the end of the experiment, we analyzed the percentage of mature receptacles, algal growth rate and the total polyphenolic content and antioxidant capacity as indicators of the stress response. The significant decrease in polyphenolic content indicates the impairment of the defence mechanisms, which could make the algae more vulnerable to grazing under acidified conditions. Yet, conversely, our results suggest that changes in pH levels do not significantly affect the physiological processes, growth or fertility of the algae. These findings suggest that while OA may weaken defence mechanisms, the preservation of physiological and reproductive functions would still support the potential of G. barbata populations from the Venice Lagoon to act as donor sources for restoration efforts, highlighting their resistance to the acidified conditions expected in the future.
Continue reading ‘Resilience of the macroalgae Gongolaria barbata under ocean acidification: physiological responses and restoration perspective’Understanding coral health from reactor engineering perspective: multiphysics modeling of coral–environment interactions
Published 30 January 2026 Science ClosedTags: biological response, corals, individualmodeling, modeling, photosynthesis, physiology, respiration
Coral, as a bioreactor, has to continuously interact with surrounding environment to maintain a healthy state. A multi-physics reaction engineering model has been developed to capture this interaction. The coral interior is modeled as interconnected reaction units respectively for photosynthesis, respiration, and calcification, whose reaction kinetics are influenced by environmental fluctuations. Coupling between coral and environment is realized by bi-directional mass transfer at the coral-seawater interface, with consideration of the unique flow fields induced by ciliary beating. By resorting to this comprehensive model, we discover that ciliary beating demonstrates distinctively different diurnal and nocturnal functions. During daytime, beating can help reduce photosynthetic oxygen accumulation to prevent hyperoxia-induced mortality, while enhancing carbon dioxide uptake efficiency to promote nutrient production. At night, however, beating promotes oxygen acquisition for adequate respiration, while expelling carbon dioxide to inhibit symbiotic destruction under acidic stress. The model further enables mechanistic analysis of the detrimental impact of climate change on coral health, where the influences from two key factors (i.e., temperature and CO2 level) can be decoupled. It’s interesting to find out that the elevated temperature plays a dominant role during daytime, while at night the coral is dominantly influenced by rising CO2 level.
Continue reading ‘Understanding coral health from reactor engineering perspective: multiphysics modeling of coral–environment interactions’Assessing sponge resilience to ocean acidification in natural reef environments
Published 28 January 2026 Science ClosedTags: biological response, BRcommunity, community composition, field, otherprocess, photosynthesis, porifera, prokaryotes, respiration, South Pacific, vents
Highlights
- Sponges are key components of coral reefs globally providing a range of important functional roles.
- We used in situ incubation chambers to measure chlorophyll concentrations, oxygen fluxes and microbial communities for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea.
- We found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities
- Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Abstract
Sponges are key components of coral reefs globally providing a range of important functional roles. While sponges are under threat from the impacts of global climate change, there is an emerging picture of sponge tolerance to ocean acidification (OA). However, to date all physiological studies on sponge tolerance to OA have been under ex-situ experimental conditions and only for a limited number of sponge species. Instead, here we used in situ incubation chambers to measure chlorophyll concentrations and oxygen fluxes for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea. We also explored differences between the sponge microbial community composition between control and vent locations for N. chaliniformis. We found very low concentrations of chlorophyll in both species, compared to other sponges, suggesting these species are largely heterotrophic. We also found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities, except some specific microbes. Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Continue reading ‘Assessing sponge resilience to ocean acidification in natural reef environments’
