Posts Tagged 'otherprocess'

Resilience of the temperate coral Oculina arbuscula to ocean acidification extends to the physiological level

Both juvenile and adult life stages of the temperate scleractinian coral Oculina arbuscula are resilient to the effects of moderate ocean acidification (OA) in contrast to many tropical corals in which growth and calcification rates are suppressed. Here, potential mechanisms of resilience to OA related to photosynthetic physiology and inorganic carbon processing were studied in adult O. arbuscula colonies. After exposing colonies to ambient and elevated carbon dioxide (CO2) treatments for 7 weeks, photosynthetic performance was characterized using photosynthesis versus irradiance experiments, chlorophyll fluorescence kinetics, and algal pigment content. Inorganic carbon-processing capabilities were assessed by measurement of internal and external carbonic anhydrase activity of the coral host, internal carbonic anhydrase activity of symbiotic algae, and the reliance of photosynthesis on external carbonic anhydrase. Photosynthetic physiology was unaffected by OA ruling out the possibility that resilience was mediated by increased photosynthetic energy supply. Carbonic anhydrase activities were maintained at elevated CO2 suggesting no major rearrangements of the inorganic carbon-processing machinery, but this could be a sign of resilience since tropical corals often down-regulate carbonic anhydrases at high CO2. The general lack of effect of ocean acidification on these physiological traits suggests other characteristics, such as maintenance of calcifying fluid pH and ability to acquire energy from heterotrophy, may be more important for the resilience of O. arbuscula to OA.

Continue reading ‘Resilience of the temperate coral Oculina arbuscula to ocean acidification extends to the physiological level’

DNA methylation changes in response to ocean acidification at the time of larval metamorphosis in the edible oyster, Crassostrea hongkongensis


  • Low pH stress resulted in hyper- and hypo-methylated genes in the pediveliger larvae of the Hong Kong oyster
  • Differentially methylated loci were concentrated in the exon region within the gene bodies
  • High capability of oyster larvae to acclimate and adapt to low pH condition within single generation despite poor habitat selection for attachment
  • Differential methylation is associated to higher metamorphosis success rate and poor larval substratum selection under low pH stress.


Unprecedented rate of increased CO2 level in the ocean and the subsequent changes in carbonate system including decreased pH, known as ocean acidification (OA), is predicted to disrupt not only the calcification process but also several other physiological and developmental processes in a variety of marine organisms, including edible oysters. Nonetheless, not all species are vulnerable to those OA threats, e.g. some species may be able to cope with OA stress using environmentally induced modifications on gene and protein expressions. For example, external environmental stressors including OA can influence the addition and removal of methyl groups through epigenetic modification (e.g. DNA methylation) process to turn gene expression “on or off” as part of a rapid adaptive mechanism to cope with OA. In this study, we tested the above hypothesis through testing the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation pattern of an endemic and a commercially important estuary oyster species, Crassostrea hongkongensis at the time of larval habitat selection and metamorphosis. Larval growth rate did not differ between control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, however over one-third of the larvae raised at pH 7.4 failed to attach on optimal substrate as defined by biofilm presence. During larval development, a total of 130 genes were differentially methylated across the two treatments. The differential methylation in the larval genes may have partially accounted for the higher metamorphosis success rate under decreased pH 7.4 but with poor substratum selection ability. Differentially methylated loci were concentrated in the exon regions and appear to be associated with cytoskeletal and signal transduction, oxidative stress, metabolic processes, and larval metamorphosis, which implies the high potential of C. hongkongensis larvae to acclimate and adapt through non-genetic ways to OA threats within a single generation.

Continue reading ‘DNA methylation changes in response to ocean acidification at the time of larval metamorphosis in the edible oyster, Crassostrea hongkongensis’

Effects of ocean acidification and microplastics on microflora community composition in the digestive tract of the thick shell mussel Mytilus coruscus through 16s RNA gene sequencing

Ocean acidification and microplastic pollution is a global environmental threat, this research evaluated the effects of ocean acidification and microplastics on mussel digestive tract microbial community. The 16S rRNA gene was sequenced to characterize the flora. Species diversity in the samples was assessed by clustering valid tags on 97% similarity. Bacteroidetes, Firmicutes and Proteobacteria were the three most abundant genera in the four groups, with Bacteroidetes showing the highest diversity. However, no differences in flora structure were evident under various treatments. Phylogenetic relationship analysis revealed Bacteroidetes and Firmicutes had the highest OTU diversity. The weighted UniFrac distance, principal coordinate analysis (PCoA), unweighted pair group method with arithmetic mean (UPGMA) cluster tree and analysis of molecular variance (AMOVA) evaluation results for all samples also showed that changes in pH and microplastics concentration did not significantly affect the microbial community structure in the mussel digestive tract. The results presented the no significant effects of ocean acidification and microplastics intake on mussel intestinal diversity.

Continue reading ‘Effects of ocean acidification and microplastics on microflora community composition in the digestive tract of the thick shell mussel Mytilus coruscus through 16s RNA gene sequencing’

Microcalcareous seaweeds as sentinels of trophic changes and CO2 trapping in transitional water systems


  • The presence of microcalcareous macroalgae was studied in the Italian lagoons.
  • Macroalgal growth was mainly affected by changes in the pH of the water column.
  • Small algae are a Litmus Test Paper Strip for environmental quality assessment.
  • Carbonated are accumulated in surface sediments by small calcareous macroalgae.
  • The CO2 abatement occurred in environments of good-high ecological conditions.


Microcalcareous epiphytic seaweeds (MES) are macroalgae more sensitive than aquatic angiosperms to environmental degradation and, with their presence/absence, these species act like sentinels providing useful information on the ecological status of environments. In this study, we analyzed the environmental parameters in water column and surface sediments in relation to macrophyte variables from 257 sites, distributed in the main Italian transitional water systems (TWS). The results showed that MES are strongly correlated to pH changes, the main parameter that regulates their presence/absence. The optimal growth range is between pH 7.80 and 8.35; out of these values their growth is reduced or hampered. In oxidized sediments the carbonate crusts, composed by Mg-Calcite (an unstable compound that in the sediments quickly turns into calcite), can permanently trap up to 2.47 tonnes ha−1 yr−1 of CO2, increasing sediment thickness of approx. 0.06–0.21 mm yr−1.

Continue reading ‘Microcalcareous seaweeds as sentinels of trophic changes and CO2 trapping in transitional water systems’

Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2

Most literature exploring the biological effects of ocean acidification (OA) has focused on macroscopic organisms and far less is known about how marine microbial communities will respond. Studies of OA and microbial community composition and diversity have examined communities from a limited number of ocean regions where the ambient pH is near or above the global average. At San Juan Island (Salish Sea), a region that experiences naturally low pH (average = 7.8), the picoplankton (cell diameter is 0.2–2μm) community was predicted to show no response to experimental acidification in a three-week mesocosm experiment. Filtered seawater mesocosms were maintained via semicontinuous culturing. Three control mesocosms were maintained at pH 8.05 and three acidified mesocosms were maintained at pH 7.60. Total bacteria was quantified daily with a flow cytometer. Microbial communities were sampled every two days via filtration followed by DNA extraction, 16S rRNA amplification, and MiSeq sequencing. There was no significant difference in total bacteria between pH treatments throughout the experiment. Acidification significantly reduced Shannon’s diversity over time. During the final week of the experiment, acidification resulted in a significant decrease in Shannon’s diversity, Faith’s phylogenetic distance, and Pielous’s Evenness. ANCOM results revealed four bacterial ASVs (amplicon sequence variants), in families Flavobaceriaceae and Hyphomonadaceae that significantly decreased in relative frequency under acidification and two bacterial ASVs, in families Flavobacteriaceae and Alteromonadaceae, that significantly increased under acidification. This is the first OA study on the microbial community of the Salish Sea, a nutrient rich, low pH region, and the first of its kind to report a decrease in both picoplankton richness and evenness with acidification. These findings demonstrate that marine microbial communities that naturally experience acidic conditions are still sensitive to acidification.

Continue reading ‘Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2’

High light alongside elevated PCO2 alleviates thermal depression of photosynthesis in a hard coral (Pocillopora acuta)

The absorbtion of human-emitted CO2 by the oceans (elevated PCO2) is projected to alter the physiological performance of coral reef organisms by perturbing seawater chemistry (i.e. ocean acidification). Simultaneously, greenhouse gas emissions are driving ocean warming and changes in irradiance (through turbidity and cloud cover), which have the potential to influence the effects of ocean acidification on coral reefs. Here, we explored whether physiological impacts of elevated PCO2 on a coral–algal symbiosis (Pocillopora acuta–Symbiodiniaceae) are mediated by light and/or temperature levels. In a 39 day experiment, elevated PCO2 (962 versus 431 µatm PCO2) had an interactive effect with midday light availability (400 versus 800 µmol photons m−2 s−1) and temperature (25 versus 29°C) on areal gross and net photosynthesis, for which a decline at 29°C was ameliorated under simultaneous high-PCO2 and high-light conditions. Light-enhanced dark respiration increased under elevated PCO2 and/or elevated temperature. Symbiont to host cell ratio and chlorophyll a per symbiont increased at elevated temperature, whilst symbiont areal density decreased. The ability of moderately strong light in the presence of elevated PCO2 to alleviate the temperature-induced decrease in photosynthesis suggests that higher substrate availability facilitates a greater ability for photochemical quenching, partially offsetting the impacts of high temperature on the photosynthetic apparatus. Future environmental changes that result in moderate increases in light levels could therefore assist the P. acuta holobiont to cope with the ‘one–two punch’ of rising temperatures in the presence of an acidifying ocean.

Continue reading ‘High light alongside elevated PCO2 alleviates thermal depression of photosynthesis in a hard coral (Pocillopora acuta)’

Current and future trophic interactions in tropical shallow-reef lagoon habitats

Calcium carbonate (CaCO3) sediments are the dominant form of CaCO3 on coral reefs accumulating in lagoon and inter-reefal areas. Owing to their mineralogy and a range of physical parameters, tropical CaCO3 sediments are predicted to be more sensitive to dissolution driven by ocean acidification than the skeleton of living reef organisms. How this scales up to impact infaunal organisms, which are an important food source for higher trophic levels, and thereby ecosystem functioning, is not well explored. We combined seasonal field surveys in a shallow-reef lagoon ecosystem on the Great Barrier Reef, Australia, with stable isotope analyses and a tank-based experiment to examine the potential top-down influence of the deposit-feeding sea cucumber, Stichopus herrmanni, on this infaunal community under current and future ocean pH. Densities of surface-sediment meiofauna were lowest in winter and spring, with harpacticoid copepods (38%) and nematodes (27%) the dominant taxa. Stable isotope analyses showed that S. herrmanni had a top-down influence on meiofauna and microphytes with a distinct δ13C and δ15N trophic position that was homogenous across seasons and locations. Tanks that mimicked sandy shallow-reef lagoon habitats were used to examine the effects of ocean acidification (elevated pCO2) on this trophic interaction. We used outdoor control (sediment only) and experimental (sediment plus S. herrmanni) tanks maintained at present-day and near-future pCO2 (+ 570 µatm) for 24 days, which fluctuated with the diel pCO2 cycle. In sediment-only tanks, copepods were > twofold more abundant at elevated pCO2, with no negative effects documented for any meiofauna group. When included in the community, top-down control by S. herrmanni counteracted the positive effects of low pH on meiofaunal abundance. We highlight a novel perspective in coral reef trophodynamics between surface-sediment meiofauna and deposit-feeding sea cucumbers, and posit that community shifts may occur in shallow-reef lagoon habitats in a future ocean with implications for the functioning of coral reefs from the bottom up.

Continue reading ‘Current and future trophic interactions in tropical shallow-reef lagoon habitats’

The impacts of ocean acidification on marine food quality and its potential food chain consequences

Dissolution of anthropogenic CO2 into the oceans results in ocean acidification (OA), altering marine chemistry with consequences for primary, secondary, and tertiary food web producers. Here we examine how OA could affect the food quality of primary producers and subsequent trophic transfer to second and tertiary producers. Changes in food quality induced by OA are often related to secondary metabolites in primary producers, such as enriched phenolics in microalgae and iodine in brown algae. These biomolecules can then be transferred to secondary producers, potentially affecting seafood quality and other marine ecosystem services. Furthermore, shifts in dominant functional groups of primary producers under the influence of OA would also impact higher trophic levels through food web interactions. It is challenging to understand how these complex food chain effects of OA may be expressed under the influence of fluctuating environments or multiple drivers, and how these effects can be scaled up through marine food webs to humans.

Continue reading ‘The impacts of ocean acidification on marine food quality and its potential food chain consequences’

Impact of ocean warming and acidification on symbiosis establishment and gene expression profiles in recruits of reef coral Acropora intermedia

The onset of symbiosis and the early development of most broadcast spawning corals play pivotal roles in recruitment success, yet these critical early stages are threatened by multiple stressors. However, molecular mechanisms governing these critical processes under ocean warming and acidification are still poorly understood. The present study investigated the interactive impact of elevated temperature (∼28.0°C and ∼30.5°C) and partial pressure of carbon dioxide (pCO2) (∼600 and ∼1,200 μatm) on early development and the gene expression patterns in juvenile Acropora intermedia over 33 days. The results showed that coral survival was >89% and was unaffected by high temperature, pCO2, or the combined treatment. Notably, high temperature completely arrested successful symbiosis establishment and the budding process, whereas acidification had a negligible effect. Moreover, there was a positive exponential relationship between symbiosis establishment and budding rates (y = 0.0004e6.43xR = 0.72, P < 0.0001), which indicated the importance of symbiosis in fueling asexual budding. Compared with corals at the control temperature (28°C), those under elevated temperature preferentially harbored Durusdinium spp., despite unsuccessful symbiosis establishment. In addition, compared to the control, 351 and 153 differentially expressed genes were detected in the symbiont and coral host in response to experimental conditions, respectively. In coral host, some genes involved in nutrient transportation and tissue fluorescence were affected by high temperature. In the symbionts, a suite of genes related to cell growth, ribosomal proteins, photosynthesis, and energy production was downregulated under high temperatures, which may have severely hampered successful cell proliferation of the endosymbionts and explains the failure of symbiosis establishment. Therefore, our results suggest that the responses of symbionts to future ocean conditions could play a vital role in shaping successful symbiosis in juvenile coral.

Continue reading ‘Impact of ocean warming and acidification on symbiosis establishment and gene expression profiles in recruits of reef coral Acropora intermedia’

Simulated future conditions of ocean warming and acidification disrupt the microbiome of the calcifying foraminifera Marginopora vertebralis across life stages

Foraminifera host diverse microbial communities that can shift in response to changing environmental conditions. To characterize climate change impacts on the foraminifera microbiome across life stages, we exposed adult Marginopora vertebralis (Large Benthic Foraminifera) to pCO2 and temperature scenarios representing present day, 2050 and 2100 levels and raised juveniles under present day and 2050 conditions. While treatment condition had no significant effect on the seawater microbial communities, exposure to future scenarios significantly altered both adult and juvenile microbiomes. In adults, divergence between present day and 2050 or 2100 conditions was primarily driven by a reduced relative abundance of Oxyphotobacteria under elevated temperature and pCO2. In juveniles, the microbial shift predominantly resulted from changes in the proportion of Proteobacteria. Indicator species analysis identified numerous treatment‐specific indicator taxa, most of which were indicative of present day conditions. Oxyphotobacteria, previously reported as putative symbionts of foraminifera, were indicative of present day and 2050 conditions in adults, but of present day conditions only in juveniles. Overall, we show that the sensitivity of the M. vertebralis microbiome to climate change scenarios extends to both life stages and primarily correlates with declines in Oxyphotobacteria and shifts in Proteobacteria under elevated temperature and pCO2.

Continue reading ‘Simulated future conditions of ocean warming and acidification disrupt the microbiome of the calcifying foraminifera Marginopora vertebralis across life stages’

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Ocean acidification in the IPCC AR5 WG II

OUP book