Oceanic islands are among the most remote and understudied regions of the planet, yet they harbour unique reef fish communities that are increasingly vulnerable to global environmental change. Because these islands are geographically isolated, their populations are often assumed to respond mainly to local environmental conditions. However, by analysing temporal patterns in oceanographic variables across two distant systems (3204 km apart) in the South Mid-Atlantic Ridge (both encompassed by marine protected areas—MPAs), we found that temporal alignment in environmental conditions was associated with coordinated shifts in counts of nine reef fish populations in each study area. Among the evaluated variables, pH emerged as the most influential factor. Despite the divergent responses among reef fishes, possibly reflecting differences in physiological plasticity, shared temporal patterns in pH appeared central to parallel population patterns observed across assemblages. Increases in sea surface height and chlorophyll-a played secondary roles, potentially benefiting some populations, although such effects may be transient. These results suggest that climate-driven convergence in environmental conditions can override geographic isolation, promoting similar biological responses that may reduce resilience and increase extinction risk. Given that both islands are legally protected, our findings highlight that even MPAs are not insulated from large-scale oceanographic stressors, underscoring the need for long-term monitoring and adaptative conservation strategies for remote reef systems.
Continue reading ‘Responses of reef fish populations to similar environmental changes across distant oceanic islands’Posts Tagged 'adaptation'
Responses of reef fish populations to similar environmental changes across distant oceanic islands
Published 9 April 2026 Science ClosedTags: abundance, adaptation, biological response, chemistry, field, fish, otherprocess, South Atlantic
Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea
Published 7 April 2026 Science ClosedTags: adaptation, biological response, field, Mediterranean, molecular biology, mollusks, morphology, otherprocess, physiology, respiration, vents
The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.
Continue reading ‘Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea’Ocean acidification affects the timing of puberty and the reproductive output in a marine temperate fish
Published 2 April 2026 Science ClosedTags: adaptation, biological response, fish, laboratory, morphology, mortality, North Atlantic, otherprocess, reproduction
Ocean acidification (OA) is a major climate-related threat to fish that can disrupt the regulation of the reproductive axis of fish, impacting reproductive success. However, previous studies have only focused on a single reproductive cycle and reported increased fecundity in some species exposed to OA. Since acclimation over several reproductive cycles can occur, it is necessary to evaluate successive reproductive cycles for predicting the actual resilience of species to OA. In this study we assessed the impact of lifetime exposure to different ocean pH/pCO2 levels (Current condition, Moderate OA and High OA) on the sexual maturation and spawning phenology of the European sea bass, over its two first reproductive periods. We tested the hypothesis that OA would exert its greatest impact at the onset of puberty (first reproduction). Accordingly, High OA exposure induced an earlier onset of puberty in both sexes, resulting in a longer spawning period and an increased fecundity. These effects were reduced during the second reproductive season. However, OA affected egg quality and sperm motility profile during the second reproductive season, leading to a total mortality at hatching of embryos spontaneously produced. This mortality was not observed in embryos produced through hormone-induced oocyte maturation and in vitro fertilisation. These results suggest that OA affects the regulation of oocyte maturation and/or the synchronisation of eggs and sperm release. The OA-driven shift in spawning may misalign with optimal environmental conditions for offspring survival. This increases the population’s vulnerability and could favour species whose reproduction is more resilient to OA.
Continue reading ‘Ocean acidification affects the timing of puberty and the reproductive output in a marine temperate fish’Impacts of ocean acidification on marine zooplankton: a review of physiological, developmental, and reproductive responses
Published 31 March 2026 Science ClosedTags: adaptation, biological response, otherprocess, physiology, reproduction, review, zooplankton
Acidification. The increasing levels of carbon dioxide CO₂ in the atmosphere are leading to ocean acidification, and this is altering the chemical content of marine water and is endangering life in the oceans. The examples of marine zooplankton, including Copepods, Pteropods, krill, and larvae of invertebrates are essential to the pelagic food webs and carbon cycles, even though they differ in their tolerance to low PH concentration and high pCO₂ levels. Early developmental phases are particularly vulnerable, with them showing retardation in developmental stages, reduced hatch rates, physical deformities as well as a lack of calcification. Higher carbon dioxide CO₂ levels interfere with the acid-base balance, increase oxidative stress and alter the allocation of metabolism, leading to trade-offs that lower growth, reproduction and survival rates. Calcifying organisms such as the pteropods are highly susceptible whereas some of the non-calcifying copepods exhibit a level of physiological resilience. Negative effects of other stressors may be affected by increased temperature, oxygen depletion, and nutrient enrichment which may further compound negative effects. There is some evidence that there is some possible acclimation in the short term and that there might be transgenerational plasticity but we do not understand adaptive capacity in the long term. Knowledge gaps exist in regard to multigenerational response, non-calcifying and gelatinous species and how physiological plasticity occurs. Species-specific responses are an important aspect of predictive models to estimate the impact of the ecosystem and guide conservation efforts. To ensure marine ecosystems remain stable as ocean acidification continues, vulnerable zooplankton should be safeguarded to preserve tropic structure, nutrient cycling, and nutrient stability.
Continue reading ‘Impacts of ocean acidification on marine zooplankton: a review of physiological, developmental, and reproductive responses’Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions
Published 30 March 2026 Science ClosedTags: adaptation, biological response, laboratory, Mediterranean, mollusks, morphology, multiple factors, otherprocess, porifera, respiration, temperature
Background
Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.
New information
This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.
Continue reading ‘Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions’Stony coral symbioses show variable responses to future ocean conditions
Published 16 March 2026 Science ClosedTags: adaptation, biological response, BRcommunity, community composition, corals, laboratory, mesocosms, multiple factors, North Pacific, otherprocess, phytoplankton, temperature
Coral reefs support over a quarter of marine species and nearly a billion people worldwide but are also among the ecosystems most threatened by anthropogenic impacts. There is long-standing debate about whether coral symbioses will be disrupted or respond adaptively under future ocean conditions. Using a factorial 2.5-year future-ocean mesocosm experiment across eight coral species representing the major coral lineages, we tracked symbiont community shifts within replicate fragments from the same individual coral. Some corals exhibited stochastic divergence consistent with dysbiosis, whereas others showed deterministic, thermally adaptive shifts. Heat stress generally reduced symbiont diversity and promoted predictable restructuring, supporting deterministic processes under moderate stress but stochastic dysbiosis under extreme conditions. We propose that adaptive and stochastic responses represent endpoints along a continuum of host-orchestrated symbiont sorting. This study bridges coral reef ecology with broader host–microbiome theory, offering an integrated perspective on how symbiotic systems may respond to environmental change.
Continue reading ‘Stony coral symbioses show variable responses to future ocean conditions’Eco-evolutionary dynamics of planktonic calcifying communities under ocean acidification
Published 12 March 2026 Science ClosedTags: adaptation, biological response, BRcommunity, calcification, communitymodeling, growth, modeling, mortality, otherprocess, performance, phytoplankton, primary production, zooplankton
Increasing emissions of CO2 into the atmosphere are causing ocean acidification, threatening calcifying organisms. In this study, we model the physiological responses of coccolithophorids to acidification to understand the ecological and evolutionary outcomes of a system in interaction with zooplankton. Assuming a trade-off between growth and protection against grazing, we show that calcification has bivalent effects on transfers between two trophic levels and that acidity can strongly alter energy transfers. Taking into account the evolution of calcifying phenotypes in response to acidification, we show that the system outcome contrasts with previous results. While the effect of evolution depends on how calcification affects grazing, it nevertheless follows that acidification leads to a decrease in calcifying capacity. This evolutionary decrease may be progressive, but can also lead to tipping points where abrupt shifts may occur. Such a counter-selection of calcification in turn affects ecosystem functioning, enhancing energy transfers within the system and modifying carbon fluxes. We discuss how such eco-evolutionary changes may impact food webs integrity, carbon sequestration into the deep ocean and therefore endanger the carbon pump stability.
Continue reading ‘Eco-evolutionary dynamics of planktonic calcifying communities under ocean acidification’Physiology and survival of intertidal calcifiers in two contrasting upwelling systems
Published 27 February 2026 Science ClosedTags: adaptation, biological response, field, laboratory, mollusks, morphology, mortality, otherprocess, physiology, South Pacific
Climate change alters the oceans’ temperature, pH, and oxygen concentration. These changes are expected to increase globally over the coming decades, affecting a wide range of marine organisms. Coastal upwelling zones, characterized by their high environmental variability, serve as ideal natural laboratories to study the potential impacts on marine organisms and ecosystems of temperature change, acidification, and ocean deoxygenation. The estimation of survival using capture‐mark‐recapture (CMR) data has been commonly applied to vertebrates, and to date, very few studies have been done on marine invertebrate organisms. In this study, we combined field CMR data and laboratory measurements to assess the physiological responses (metabolic rate and heart rate) and survival probability of individuals in two populations of intertidal mollusks, Chiton granosus and Scurria zebrina, in contrasting upwelling environments (i.e., semi‐permanent vs. seasonal). We found that (1) there are no differences between the two studied populations for heart rate in both species, (2) the S. zebrina population subjected to seasonal upwelling has a higher metabolism, (3) there are no differences in the calcification rate between the two studied populations of both species, and (4) survival is significantly higher in the semi‐permanent upwelling location for both species. Our findings highlight species‐specific responses to contrasting upwelling regimes, suggesting that phenotypic plasticity and survival differences may influence resilience under ongoing climate change.
Continue reading ‘Physiology and survival of intertidal calcifiers in two contrasting upwelling systems’Plasticity and adaptation in a changing ocean: a review of research trends and challenges
Published 24 February 2026 Science ClosedTags: adaptation, biological response, otherprocess, review
Climate change and ocean acidification pose significant challenges to both terrestrial and aquatic ecosystems, making it critical to understand species’ vulnerability. Phenotypic plasticity and evolutionary adaptation are key mechanisms enabling organisms to cope with environmental shifts, with marine species appearing particularly susceptible. This semi-quantitative bibliometric review, conducted following PRISMA guidelines, examines research on climate change and ocean acidification impacts on marine organisms, focusing on plasticity and adaptation. We analysed 168 peer-reviewed articles published between 1995 and 2024 from Web of Science and Scopus. Publications remained low until 2013, then increased threefold, peaking in 2019, with the US, Australia, and China leading. Research predominantly addressed marine animals, especially fish, bivalves, and other invertebrates. Most studies focused on plasticity (57%) and examined molecular traits as response variables. Temperature, pH, and their combination were the most studied environmental drivers, whereas salinity and dissolved oxygen received little attention. Conceptual ambiguities in the use of plasticity and adaptation were noted. Our review highlights research gaps and emphasizes the need for integrated studies on plasticity and adaptation to better understand marine species’ vulnerability to climate change and ocean acidification and guide effective conservation and management strategies.
Continue reading ‘Plasticity and adaptation in a changing ocean: a review of research trends and challenges’Short-term mechanisms, long-term consequences: molecular effects of ocean acidification on juvenile snow crab
Published 20 February 2026 Science ClosedTags: adaptation, biological response, crustaceans, laboratory, molecular biology, morphology, mortality, North Pacific, otherprocess, physiology, reproduction
Understanding how marine species tolerate acidified conditions is critical for predicting biological responses to ocean change. A recent one-year experiment (Long 2026) found that juvenile snow crab (Chionoecetes opilio) maintain growth and molting under acidification (pH 7.8, 7.5), and survival begins to decline only after ∼250 days under severe acidification (pH 7.5). In this companion study, we characterized whole-transcriptome responses after 8 hours and 88 days of exposure to identify molecular mechanisms underlying short-term tolerance and chronic effects of ocean acidification. The immediate transcriptional response involved strong activation of genes associated with mitochondrial metabolism and biogenesis, protein homeostasis, cuticle maintenance, and immune modulation, processes shared between moderate and severe treatments but of greater magnitude under severe acidification. After 88 days, expression patterns diverged, revealing sustained upregulation of stress- and damage-mitigation pathways in the severe treatment (pH 7.5) compared to the moderate treatment (pH 7.8). These findings indicate that crabs in severe acidification are likely to experience chronic OA stress that precedes outward physiological effects, and provides a mechanistic basis for delayed mortality. We further highlight potential early indicators of chronic acidification stress in snow crab, among which a gene likely coding for carbonic anhydrase 7 (CA7, GWK47_031192) appears to be the most promising biomarker.
Continue reading ‘Short-term mechanisms, long-term consequences: molecular effects of ocean acidification on juvenile snow crab’Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions
Published 16 February 2026 Science ClosedTags: adaptation, biological response, laboratory, Mediterranean, mollusks, morphology, multiple factors, otherprocess, porifera, respiration, temperature
Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.
This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.
Continue reading ‘Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions’Parental exposure to ocean acidification impacts the larval development and transcriptome of the Pacific oyster Crassostrea gigas
Published 2 February 2026 Science ClosedTags: adaptation, biological response, growth, laboratory, molecular biology, mollusks, North Pacific, otherprocess, reproduction
Atmospheric carbon dioxide (CO2) levels are escalating at an unprecedented rate, leading to the phenomenon of ocean acidification (OA). Parental exposure to acidification has the potential to enhance offspring resilience through cross-generation plasticity. In this study, we analyzed larval growth and transcriptomic profiles in the Pacific oyster, Crassostrea gigas, a species of significant ecological relevance, under both control and elevated CO2 conditions experienced by their parental generation. Our findings indicate that the oyster populations exposed to OA exhibited a higher incidence of abnormalities during the D-shaped larval stage, followed by accelerated growth at the eyed stage. Through a comparative transcriptomic investigation of eyed larvae (25 d after fertilization), we observed that parental exposure to OA substantially influenced the gene expression in the offspring. Genes associated with lipid catabolism and shell formation were notably upregulated in oysters with parental OA exposure, potentially playing a role in cross-generational conditioning and conferring resilience to OA stressors. These results underscore the profound impact of OA on oyster larval development via cross-generational mechanisms and shed light on the molecular underpinnings of cross-generation plasticity.
Continue reading ‘Parental exposure to ocean acidification impacts the larval development and transcriptome of the Pacific oyster Crassostrea gigas’Transgenerational effects of extreme weather on Manila clam resilience: implications for aquaculture sustainability
Published 27 January 2026 Science ClosedTags: adaptation, biological response, fisheries, laboratory, mollusks, morphology, mortality, multiple factors, North Pacific, otherprocess, physiology, reproduction, respiration, temperature
Highlights
- SAE+MHW synergistically impaired clams during reproduction.
- Progeny exhibited lasting developmental delays and high mortality.
- Long-term physiological dysfunction persisted into later life stages.
- Compound extremes threaten bivalve aquaculture resilience.
Abstract
Extreme environmental events, including sea acidity extremes (SAE) and marine heatwaves (MHW), pose increasing threats to coastal aquaculture species. This study examined the individual and combined effects of SAE and MHW on Manila clams (Ruditapes philippinarum) and their transgenerational impacts. Adults exposed to SAE+MHW showed reduced survival, decreased condition index, lower clearance rate (CR) and assimilation efficiency (AE), elevated ammonia excretion (ER), and negative scope for growth, indicating disrupted energy budgets. Reproductive output and gonadal development were also compromised. Offspring from stressed parents exhibited lower larval survival, stunted shell growth, reduced metamorphic success, smaller settlement size, reduced juvenile (6-month-old) survival rate and disrupted energy homeostasis, revealing persistent transgenerational impacts on development and energy homeostasis. These findings suggest that parental exposure to synergistic SAE+MHW alters energy allocation and may involve epigenetic mechanisms, ultimately impairing offspring fitness. Overall, our study demonstrates that compound extreme events can severely affect metabolic resilience and cross-generational performance in Manila clams, highlighting the need for multigenerational assessments, selective breeding, and aquaculture strategies to enhance climate resilience.
Continue reading ‘Transgenerational effects of extreme weather on Manila clam resilience: implications for aquaculture sustainability’Transcriptomic responses of the marine diatom Phaeodactylum tricornutum to high carbon and low nitrogen stress
Published 23 January 2026 Science ClosedTags: adaptation, biological response, laboratory, molecular biology, multiple factors, nutrients, otherprocess, phytoplankton
Diatoms play a pivotal role in global biogeochemical cycling and marine primary productivity, making them ideal model organisms for understanding how phytoplankton respond to environmental fluctuations associated with global climate change. In natural marine systems, diatoms frequently encounter simultaneous variations in carbon and nitrogen availability, yet most previous studies have examined the effects of these factors in isolation. To elucidate the integrated transcriptional mechanisms underlying diatom acclimation to coupled carbon–nitrogen (C—N) imbalance, we employed RNA sequencing (RNA‐Seq) to characterize the global transcriptional response of the model diatom Phaeodactylum tricornutum to high CO2 (~2000 μatm) and low nitrogen (10% of nitrogen concentration in f/2 medium) under parallel culture conditions. The results revealed both shared and distinct transcriptional responses between the two treatments. Key genes involved in carbon metabolism, such as phosphoglycerate mutase (PGAM_7) and dihydrolipoamide succinyltransferase (PHATRDRAFT_40430), were significantly upregulated, indicating enhanced glycolytic and TCA cycle activity. In contrast, the Calvin‐cycle enzyme fructose‐1,6‐bisphosphatase (FBPC4) was downregulated. Genes associated with nitrogen assimilation‐including nitrate reductase (PHATRDRAFT_54983), nitrite reductases (PHATRDRAFT_13154, PHATRDRAFT_8155), and ferredoxin–nitrite reductase (PHATRDRAFT_27757)‐were strongly induced under both conditions. Pathway enrichment analysis further indicated the activation of lactic acid fermentation and nitrogen salvage pathways, suggesting a metabolic shift toward energy conservation and nutrient recycling. Collectively, these findings provide an overview of the transcriptional adjustments that enable P. tricornutum to maintain C—N homeostasis under high CO2 and low nitrogen stress, offering new insights into diatom metabolic plasticity under changing ocean conditions.
Continue reading ‘Transcriptomic responses of the marine diatom Phaeodactylum tricornutum to high carbon and low nitrogen stress’Chronic exposure to low pH negatively impacts blue mussels (Mytilus edulis) from an intertidal zone
Published 20 January 2026 Science ClosedTags: adaptation, biological response, growth, laboratory, mollusks, mortality, North Atlantic, otherprocess, physiology
In intertidal ecosystems, mussels experience daily fluctuations in pH due to the biological activity, intertidal currents, freshwater inflow and anthropogenic influences. This study aimed to determine whether these short-term fluctuations enable blue mussels (Mytilus edulis) to endure long-term exposure to low pH using biological indicators (mortality rates, oxidative stress and enzyme activities). Mussels were collected from an intertidal zone in the western coast of Morocco and exposed for 6 months to seawater pH ranging from 6.6 to 8.0. Our results showed that mortality rates increased exponentially with decreasing pH, while growth rates declined linearly. At pH 6.6, mortality was observed after approximately 15 days and reached 22% at 6 months. Low pH negatively impacted the function of metabolic enzymes (glyceraldehyde-3-phosphate dehydrogenase and succinate dehydrogenase), and caused oxidative stress (elevated lipid peroxidation and protein oxidation) in the mantle, digestive gland, and whole tissues. Additionally, the activity of antioxidant enzymes catalase and superoxide dismutase increased in response to higher levels of reactive oxygen species at low pH. These findings suggest that, although mussels can inhabit intertidal zones with short-term pH fluctuations, this does not equip them with the ability to deal with chronic exposure to low pH (6.6), significantly impairing their fitness.
Continue reading ‘Chronic exposure to low pH negatively impacts blue mussels (Mytilus edulis) from an intertidal zone’Northern shrimp exhibit origin-specific proteomic remodelling under ocean acidification, with limited response to ocean warming
Published 19 January 2026 Science ClosedTags: adaptation, biological response, crustaceans, laboratory, multiple factors, North Atlantic, otherprocess, physiology, temperature
Highlights
- Ocean acidification, but not warming, drives proteomic response in Northern Shrimp.
- Shrimp from different origins show distinct molecular responses to ocean acidification.
- St. Lawrence shrimp display the strongest protein changes to ocean acidification.
- Local conditions shape how shrimp cope with global change drivers.
- Conservation plans must consider regional differences in shrimp responses.
Abstract
The Northern shrimp (Pandalus borealis) is an ecologically important species and the target of one of the world’Canas largest shellfish fisheries. Yet, its habitats are rapidly changing due to human-driven climate change, with temperatures projected to increase by ∼4 °C and seawater pH to decline by 0.3 pH units the end of the century. These stressors may cause interactive effects, with responses differing among origins due to local adaptation or long-term acclimatisation. We investigated the impacts of ocean warming and acidification (individually and combined) on the proteome of female P. borealis from four geographic origins. Shrimp proteomes responded to ocean acidification, but not to warming, with marked origin-specific differences. Comparing the most favourable condition (2 °C, pH 7.75) to low pH (7.35) across tested temperatures, we detected 109 differentially abundant proteins (DAPs) in shrimp from the Saint Lawrence Estuary (SLE), six in those from the Northeast Newfoundland Coast (NNC) and Eastern Scotian Shelf (ESS), and three in the Esquiman Channel (EC). SLE shrimp showed widespread downregulation across metabolic, genetic information processing, and signalling pathways, suggesting higher sensitivity to acidification relative to other origins, where responses were muted. These findings highlight intraspecific variation in proteomic responses to ocean acidification in this commercially valuable crustacean. They confirm ocean acidification as a major concern in the context of rapid environmental change and suggest that uniform conservation strategies may be ineffective. Instead, management efforts should account for origin-specific sensitivities, reflecting the complex adaptive landscape shaping the resilience of P. borealis and other exploited marine species.
Continue reading ‘Northern shrimp exhibit origin-specific proteomic remodelling under ocean acidification, with limited response to ocean warming’Effects of pH on growth and anatomical characters of tapeseagrass (Enhalus acoroides (Linnaeus f.) Royle)
Published 14 January 2026 Science ClosedTags: adaptation, biological response, laboratory, morphology, North Pacific, otherprocess, phanerogams, photosynthesis, physiology, reproduction
Enhalus acoroides (Linnaeus f.) Royle or tape seagrass plays a vital role in tropical seagrass meadows, especially in Thailand. While ocean acidification negatively affects many marine species, it may benefit tropical seagrasses. E. acoroides relies on seed dispersal for sexual reproduction, and pH variations may influence seedling development. This study examined the effects of pH levels (6, 7, 8, and 9) on E. acoroides seedling growth over 8 weeks in controlled aquariums. All treatments showed 100% seed germination during the first week. By week 2, no significant differences in biomass were observed, but by week 8, seedlings at pH 6 had the highest dry weight (0.21±0.01 g), as well as the greatest leaf number (5.64±0.15 leaves), leaf length (23.39±2.06 mm), and leaf width (4.74±0.14 mm). One-way ANOVA revealed significant differences in growth by week 8. Lower pH levels enhanced shoot and root growth, while higher pH increased root number but reduced root length. Chlorophyll content analysis showed no correlation with pH after 8 weeks. Anatomical examination revealed tannin cells, starch granules, and thick cell walls in the mesophyll, with an enlarged exodermis in lower pH treatments, suggesting an adaptation for stabilizing in muddy, acidic conditions. These findings indicate that pH influences the growth and adaptation of E. acoroides seedlings, highlighting the species resilience to acidification. Its adaptive capacity is crucial for management, as E. acoroides can survive acidification and continue providing habitat, preserving ecosystem balance.
Continue reading ‘Effects of pH on growth and anatomical characters of tapeseagrass (Enhalus acoroides (Linnaeus f.) Royle)’Differing proteome responses to ocean acidification between two common pocilloporid corals
Published 24 December 2025 Science ClosedTags: adaptation, biological response, corals, laboratory, otherprocess, physiology, South Pacific
Ocean acidification threatens coral reef ecosystems by challenging calcification processes fundamental to reef accretion. Yet many corals continue to calcify under elevated pCO2, suggesting species-specific physiological plasticity and potential cellular compensations. Here, we use label-free quantitative proteomics to investigate proteomic responses of two common pocilloporid corals, Stylophora pistillata and Pocillopora damicornis, with known differential resistance to ocean acidification after two months at moderate (~ 940 ppm) and high (~ 2,800 ppm) pCO2 compared to the control (~ 480 ppm). S. pistillata exhibited extensive proteomic restructuring under high pCO2, marked by widespread declines of energy-generating pathways, yet selective increase of proteins involved in ion transport, cytoskeletal stability, and stress responses. This indicates a strategy of general metabolic suppression coupled with targeted investment into essential cellular functions, potentially sustaining calcification despite reduced overall metabolic capacity. In contrast, P. damicornis showed much less proteomic adjustment, primarily involving structural proteins and those potentially linked to cellular redox balance, signifying a moderate, targeted strategy for physiological stability. These divergent responses highlight contrasting modes of resistance (plasticity versus stability). Integrated with physiological data, our findings clarify cellular mechanisms controlling calcification, demonstrating the value of proteomics in coral ecophysiology and providing new insights into species-specific vulnerability under future ocean conditions.
Continue reading ‘Differing proteome responses to ocean acidification between two common pocilloporid corals’Impact of acidification and ultraviolet radiation on the physiology of Ulva fasciata
Published 19 December 2025 Science ClosedTags: adaptation, algae, biological response, laboratory, light, Mediterranean, multiple factors, otherprocess, photosynthesis, physiology
Ocean acidification and increased UVR exposure driven by factors such as global warming, ozone layer depletion and anthropogenic activities are impacting the physiology and ecology of macroalgae in species-specific, diverse and complex ways. This study aims to investigate the individual and combined effects of ocean acidification and ultraviolet radiation (UVR) on the physiological responses of the cosmopolitan macroalgae species Ulva fasciata. The algae samples were cultured under laboratory conditions at two different pH levels (8.2 and 7.7) and under either the presence or absence of UVR. In U. fasciata, the maximum quantum efficiency of photosystem II (Fv/Fm) decreased with low pH and UVR, and a synergistic stress response was observed when these two stressors were applied together. The relative electron transport rate (rETRmax) varied depending on pH, while UVR increased this rate. These findings indicated that U. fasciata samples were under physiological stress. The incubation period significantly affected rETRmax and showed that the organism developed time-dependent adaptation responses. Alpha, a photosynthetic efficiency indicator, was negatively affected by UVR, whereas the light saturation point (Ik) varied as a result of the interaction between incubation time, pH, and UVR. The findings suggest that UVR exerted a more pronounced inhibitory effect on the photosynthetic system and growth of U. fasciata than low pH. Furthermore, combined exposure to UVR and low pH resulted in stronger growth inhibition, and a significant interaction between the two stressors was observed. Low pH and UVR exposure caused increased carbonic anhydrase activity (CA), while high CO2 led to a decrease in nitrate reductase activity (NR). UV-absorbing compounds (UVACs) were significantly affected by low pH and culture duration, whereas the effect of UVR on these compounds became significant only through its interaction with the incubation period. This suggests that the effect of UVR emerges through temporal accumulation. The findings reveal that this species is capable of developing late-phase acclimation strategies in response to environmental stress factors and possesses a potential adaptive capacity to cope with future marine change scenarios.
Continue reading ‘Impact of acidification and ultraviolet radiation on the physiology of Ulva fasciata’Integrative analysis of coral plasticity and adaptations reveals key proteins driving resilience to changes in ocean carbonate chemistry
Published 14 November 2025 Science ClosedTags: adaptation, biological response, calcification, corals, laboratory, molecular biology, otherprocess, physiology
Understanding how corals adapt to changes in seawater carbonate chemistry is crucial for developing effective coral conservation strategies. Research to date has mostly focused on short-term experiments, overlooking long-term evolutionary effects. Here, we investigated the link between short-term stress responses and long-term genetic adaptations in the coral species Porites pukoensis through experiments under varying CO2 and alkalinity conditions. Our results showed that alkalinity enrichment significantly increased coral calcification rates by 35%-45% compared to high CO2 treatment, highlighting the potential of alkalinity enrichment to mitigate acidification impacts. Corals modulated relative expression levels of basic and acidic proteins in response to changes in seawater carbonate chemistry in the stress experiments. Genomic data revealed that this mechanism has been evolutionarily fixed in various organisms adapting to seawater carbonate chemistry. Additionally, both experimental and genomic results showed that extracellular matrix proteins, like collagen with von Willebrand factor type A domain, were modified in response to distinct carbonate environments. Molecular dynamics simulations and in-vitro experiments demonstrated that the structural stability of these proteins contributes to coral resilience under acidified conditions. This study established an integrated framework combining stress experiments, multi-omics analyses, molecular simulations, and in-vitro validation to identify key proteins involved in coral adaptation to acidification.
Continue reading ‘Integrative analysis of coral plasticity and adaptations reveals key proteins driving resilience to changes in ocean carbonate chemistry’
