Ocean acidification, characterized by a gradual seawater pH decline, influences marine primary producers such as diatoms, which contribute substantially to oceanic carbon fixation. Experimental studies aiming to project climate change impacts often simulate acidification via abrupt pH shifts, potentially misrepresenting ecological and evolutionary responses. Here we conduct a long-term evolution experiment with the marine diatom Chaetoceros muelleri, comparing abrupt and gradual CO2 increases from 440 to 1000 ppm over 1100 generations. Integrating evolutionary genomics, physiological assays, elemental stoichiometry, and Earth System Modeling, we find that abrupt acidification exaggerates diatom growth and carbon fixation responses by up to 15%, driven by enhanced divergent genomic signals and persistent gene expression changes. Gradual acidification elicits weaker phenotypic and genomic shifts, aligning more closely with natural ocean conditions. These findings suggest that models based on abrupt CO2 increases may overestimate the contribution of Chaetoceros muelleri and maybe also other diatoms to productivity and biogeochemical cycling under ocean acidification, highlighting the importance of gradual pH decline in experimental designs to accurately predict marine ecosystem responses.
Continue reading ‘Abrupt pH changes overestimate the responses of Chaetoceros muelleri to ocean acidification’Posts Tagged 'adaptation'
Abrupt pH changes overestimate the responses of Chaetoceros muelleri to ocean acidification
Published 30 October 2026 Science Leave a CommentTags: adaptation, biogeochemistry, biological response, globalmodeling, growth, laboratory, modeling, molecular biology, otherprocess, photosynthesis, physiology, phytoplankton, primary production, protists
Surviving together: evolutionary dependency, community dynamics, and mortality in marine microbial communities
Published 26 October 2026 Science Leave a CommentTags: abundance, adaptation, biological response, community composition, growth, laboratory, light, molecular biology, mortality, multiple factors, nutrients, otherprocess, photosynthesis, physiology, phytoplankton, primary production, prokaryotes, reproduction, respiration, temperature
Oligotrophic regions of the world ocean sustain vast phytoplankton populations despite extremely low nutrient levels. However, the mechanisms governing their coexistence, interdependence, and mortality are poorly understood. This dissertation investigates how evolutionary dependency, community feedback, and regulated cell death (RCD) jointly shape the stability of marine microbial communities using the Prochlorococcus/Parasynechococcus/Alteromonas model system.
In Chapter 1, I argue that the Black Queen (BQ) hypothesis—which posits that microbes lose costly metabolic functions supplied by community partners—provides a unifying framework for understanding phytoplankton ecology. This framework helps resolve longstanding puzzles, including the paradox of the plankton and the evolutionary maintenance of RCD in unicellular organisms. Building on this framework, Chapter 2 uses transcriptomic analysis of Alteromonas in co-culture with picocyanobacteria to demonstrate that community composition induces greater changes in gene expression than pCO₂ alone. Reduced 2-phosphoglycolate/glycolate exudation by Prochlorococcus under elevated pCO₂ may disrupt the helper heterotroph effect underlying this cyanobacterium’s BQ dependency.
Chapter 3 integrates co-culture experiments, RNA-seq, metabolomics, and mathematical modeling to demonstrate that the stable coexistence of Prochlorococcus and Parasynechococcus is maintained by an “Ouroboros network” of feedback loops. In this network, resource competition, carbon exudation, BQ dependency, and possibly RCD collectively stabilize the community across environmental gradients and during adaptation to changing conditions.
Chapter 4 resolves the cellular mechanisms underlying RCD in these cyanobacteria, showing that differences in cell death modes and the number of checkpoint-linked mortality events between taxa are associated with divergent life-history strategies. These findings suggest that carbon released at these checkpoints may shape interactions with helper Alteromonas, linking individual cell death to community-level interdependencies.
In conclusion, these findings converge on a new resolution to the paradox of the plankton: coexistence in resource-limited environments emerges from interdependent metabolic exchanges, feedback, and regulated cell death shaped by multilevel selection. I propose that together, these processes form an “altruistic bargain” in which stability arises from self-constraint rather than competition alone. Because these interactions are environmentally sensitive, climate change, including warming and acidification, may disrupt the dependencies that sustain microbial diversity and ecosystem function in the world ocean.
Continue reading ‘Surviving together: evolutionary dependency, community dynamics, and mortality in marine microbial communities’Long-term coral responses to high CO2: insights from volcanic vents and semi-enclosed bays
Published 20 October 2026 Science Leave a CommentTags: abundance, adaptation, biological response, community composition, corals, mortality, multiple factors, North Pacific, otherprocess, oxygen, physiology, South Pacific, temperature, vents
This chapter provides a comprehensive review of natural laboratories used to study the effects of ocean acidification (OA) on coral reefs, emphasizing volcanic CO2 vents and semi-enclosed bays. It examines key environmental conditions at these study sites and their implications for coral physiology, biodiversity, and reef resilience. Two prominent natural analogues are highlighted: the Shikine Island warm-temperate shallow CO2 vent system in Japan and the semi-enclosed lagoon of Bouraké in New Caledonia.
Shikine Island represents a unique high-latitude coral environment influenced by the Kuroshio Current. The island’s CO2 vents provide a natural setting to investigate the community level effects of ocean acidification and how elevated CO2 levels interact with ocean warming and influence coral tropicalization. Findings suggest that while some corals persist at high CO2 levels, biodiversity declines significantly, with sensitive species unable to establish stable populations. Corals growing in these conditions exhibit reduced calcification, and the community structure shifts toward simpler, lower-complexity ecosystems dominated by turf algae. These results indicate that ocean acidification may act as a constraint on the poleward expansion of tropical corals, counteracting warming-induced range shifts.
In contrast, the semi-enclosed lagoon of Bouraké experiences extreme environmental fluctuations in pH, oxygen, and temperature, providing a window into the multifactorial stressors coral reefs may face in the future. Despite prolonged exposure to acidified, hypoxic, and thermally variable waters, corals in Bouraké demonstrate remarkable resilience. The system harbors diverse coral assemblages, with species exhibiting metabolic adjustments, increased heterotrophy, and shifts in symbiotic algae communities. This site suggests that coral ecosystems can develop physiological adaptations that enhance their survival in extreme conditions, offering valuable insights into the potential for long-term acclimatization.
By comparing these two contrasting natural analogues, this chapter highlights the complex interplay between acidification, warming, and other environmental stressors on coral reefs. While both sites provide critical insights into the future of coral ecosystems, they also underscore the urgent need for continued research and conservation efforts to mitigate the effects of climate change on marine biodiversity.
Continue reading ‘Long-term coral responses to high CO2: insights from volcanic vents and semi-enclosed bays’Differential gene expression reveals molecular mechanisms for physiological resilience to ocean acidification stress in native and introduced oyster species
Published 9 October 2026 Science ClosedTags: adaptation, biological response, fisheries, molecular biology, mollusks, North Pacific, otherprocess, physiology
Coastal-estuarine habitats are rapidly changing with respect to ocean acidification (OA). Along the West Coast of the United States, coastal upwelling regions are high in productivity and rich in nutrients, making them key areas for aquaculture oyster production. The native Olympia oyster Ostrea lurida has experienced population collapse due increased commercial harvest, habitat loss, and the introduction of the non-native Pacific oyster Magallana gigas. Despite intense focus on physiological responses of oysters to OA stress, molecular underpinnings of have yet to be fully described, particularly in niche species. Juvenile oysters of both M. gigas and O. lurida were exposed to a range of experimental OA conditions for six weeks to investigate transcriptomic and biomineralization responses under fluctuating and chronic low pH. Low pH had a significant effect on shell dissolution for both Pacific and Olympia oysters, with no statistical difference observed between the two species. Differential gene expression revealed distinct differences in responses of the Pacific and Olympia oysters to OA on the transcriptomic level, with M. gigas showing elevated molecular responses to OA stress. Our findings suggest that the two species may employ distinct adaptive strategies to mitigate low pH that are informative for species-specific management strategies.
Continue reading ‘Differential gene expression reveals molecular mechanisms for physiological resilience to ocean acidification stress in native and introduced oyster species’Diversity and dynamics of sponge microbiomes under ocean acidification: insights from natural CO₂ vents and reciprocal transplant experiments
Published 8 October 2026 Science ClosedTags: adaptation, biological response, BRcommunity, field, molecular biology, otherprocess, physiology, porifera, prokaryotes, vents
Marine sponges are key benthic organisms whose ecological success is closely linked to their associated microbial communities. This thesis investigated the microbiome responses of three Mediterranean HMA demosponges, Chondrosia reniformis, Petrosia ficiformis, and Chondrilla nucula, inhabiting natural CO₂ vents off Ischia Island. By comparing wild populations under ambient and reduced pH with in situ transplants, this work explored long-term acclimatization and short-term responses. Species-specific transplantation protocols were optimized to ensure survival of the three sponges and experimental reliability. Then, 16S rRNA gene metabarcoding was used to characterize sponge-associated and seawater microbial communities. Results showed that sponge microbiomes were distinct from seawater and structured by host identity but each species displayed different degrees of stability and plasticity under acidified conditions. Chondrosia reniformis exhibited a highly stable microbiome, with acidification inducing only fine-scale shifts within a conserved core. Petrosia ficiformis showed greater flexibility, but short-term responses were strongly constrained by donor identity and source-associated signatures. In C. nucula, light availability emerged as the main driver of microbiome reorganization, while low pH modulated this response, promoting shifts from photosymbiosis-related taxa toward lineages potentially linked to nitrification and chemoautotrophy. Overall, sponge holobiont resilience appears to rely not on extensive microbial replacement, but on species-specific rearrangements of resident symbionts within persistent host-associated frameworks.
Continue reading ‘Diversity and dynamics of sponge microbiomes under ocean acidification: insights from natural CO₂ vents and reciprocal transplant experiments’Involvement of CgPGC-1α in regulating mitochondrial biogenesis in Pacific oyster Crassostrea gigas under ocean acidification
Published 5 October 2026 Science ClosedTags: adaptation, biological response, fisheries, laboratory, molecular biology, mollusks, multiple factors, otherprocess, physiology, temperature
Highlights
- CgPGC-1α with classical RRM domain was identified from Crassostrea gigas.
- CgPGC-1α mRNA was ubiquitously expressed with the highest level in gill.
- CgPGC-1α could respond to acidification treatment, promote mitochondrial biogenesis.
- Acidification enhanced mitochondrial biogenesis and ATP via AMPKα/PGC-1α.
Abstract
Ocean acidification poses a significant threat to calcifying marine organisms. The Pacific oyster Crassostrea gigas is an economically and ecologically important bivalve species. Understanding the molecular mechanisms underlying its physiological adaptation to acidification stress is therefore of great ecological and aquaculture relevance. Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is a central regulator of mitochondrial biogenesis and cellular energy metabolism, which plays important roles in response to various stressors. In this study, a PGC-1α homolog was identified from Crassostrea gigas (CgPGC-1α), which harbors an evolutionarily conserved RRM domain. The phylogenetic tree indicated that CgPGC-1α first clustered with PGC-1α from molluscs, then grouped with vertebrate PGC-1α, and finally joined with the PGC-1α of arthropods. During larval development, expression level of CgPGC-1α increased from the early embryonic stages, reached its highest level at blastula stage, and subsequently decreased during later development stages. In adult oysters, expression level of CgPGC-1α were detected in haemocytes and all examined tissues, with the highest level in gills. When the oysters were exposed to acidified seawater at pH 7.4, the expression level of CgPGC-1α in gonad was significantly upregulated at 7 and 21 days. Furthermore, at 7 days after acidification treatment, the mtDNA copy number, the expression level of CgMFN mRNA transcripts, the CgPGC-1α protein levels and the pAMPKα (Thr172) phosphorylation levels all significantly increased (p < 0.05), while the relative mRNA expression level of CgDRP1 significantly decreased (p < 0.05). Moreover, a significant increase in the number of mitochondria with morphology changing from elliptical to irregular and cristae becoming swollen was observed, and the ATP content was significantly elevated. After 28d days of acidification, mtDNA copy number and the expression level of CgMFN and CgNRF2 were significantly decreased, whereas the expression level of CgDRP1 was significantly increased. Collectively, these findings reveal a temporal response to acidification, characterized by an early compensatory activation of the AMPKα/PGC-1α axis and enhanced mitochondrial biogenesis, followed by impaired mitochondrial homeostasis under prolonged acidification stress. This study provides new insights into the molecular mechanisms underlying oyster resilience to ocean acidification and highlights the potential importance of mitochondrial adaptation in coping with future environmental changes.
Continue reading ‘Involvement of CgPGC-1α in regulating mitochondrial biogenesis in Pacific oyster Crassostrea gigas under ocean acidification’A key seawater acidification-enriched gut bacterium, Pseudoalteromonas carrageenovora P1, enhances growth performance, antioxidant status, and disease resistance in sea cucumbers under seawater acidification
Published 28 September 2026 Science ClosedTags: abundance, adaptation, biological response, BRcommunity, echinoderms, fisheries, laboratory, molecular biology, morphology, North Pacific, otherprocess, physiology, prokaryotes
Highlights
- First discovery of Pseudoalteromonas enrichment in A. japonicus gut under acidification.
- The dominant strain P. carrageenovora P1 was successfully isolated.
- P. carrageenovora P1 activates host antioxidant and immune pathways to bolster stress resilience.
- P. carrageenovora P1 significantly enhances resistance to V. splendidus 21,915 infection in A. japonicus.
Abstract
The sea cucumber (Apostichopus japonicus) is a key mariculture species of high economic value in East Asia. However, Ocean acidification, resulting from the increased uptake of anthropogenic CO₂ by seawater, severely impairs its growth, survival, and reproductive performance, thereby threatening the sustainable development of this aquaculture industry. The gut microbiota play a critical role in host adaptation to environmental stress; however, their involvement in mediating A. japonicus responses to seawater acidification remains unclear. Therefore, this study first compared the gut microbial communities of juvenile and adult A. japonicus under acidified and ambient seawater conditions. The results showed that Pseudoalteromonas abundance was significantly enriched under seawater acidification, from which the dominant strain, Pseudoalteromonas carrageenovora P1, was screened and isolated. This strain, when supplied as a dietary supplement under seawater acidification, improved A. japonicus growth performance and intestinal morphology, activated the Keap1-Nrf2-ARE and NF-κB pathways, enhanced antioxidant capacity and immune function, and increased resistance against Vibrio splendidus 21915 infection. Moreover, P. carrageenovora P1 modulated gut microbial structure by promoting beneficial bacteria such as Lutibacter while suppressing potential pathogens, including Vibrio, thereby maintaining intestinal homeostasis under acidification stress. This study reveals the important value of the gut microbiota of A. japonicus in regulating environmental tolerance of benthic invertebrates, and also provides a scientific reference for stress resistance regulation and health maintenance in A. japonicus aquaculture under seawater acidification.
Thermal history and behavioural plasticity shape reef fish tolerance to marine heatwaves
Published 25 September 2026 Science ClosedTags: adaptation, biological response, field, fish, laboratory, morphology, multiple factors, North Pacific, performance, physiology, temperature
Marine heatwaves are becoming more frequent and intense, driving mass fish mortalities and reshaping marine ecosystems, yet the capacity of fishes to tolerate heatwaves remains unclear. We quantified physiological condition and behavioural responses of juvenile warm-water (Abudefduf vaigiensis) and cool-water (Microcanthus strigatus) fishes from three natural climate analogues—an ambient temperate reef, an ocean warming analogue, and a combined warming and extreme acidification analogue—before and during the 2023 global marine heatwave, and under a + 3 °C simulated heatwave in the laboratory. In the laboratory, warm-water fish from the warm reef began the experiment in leaner condition than cool reef fish but increased their bite rates under heatwave conditions, compensating for elevated metabolic demand and maintaining body condition. Cool-water fish showed no behavioural adjustment to the heatwave, and body condition diverged by reef origin: cool reef fish lost weight across all treatments while warm- and extreme-origin fish maintained condition, suggesting tolerance was conferred by prior thermal history rather than acute behavioural responses. In the field, warm-water fish were leaner and had lower protein content during the 2023 heatwave than before it, while cool-water fish from the extreme reef had lower body condition than those from the cool reef prior to the heatwave. Our findings suggest that behavioural plasticity can facilitate warm-water fish tolerance to heatwaves at their cold leading edges, while thermal history supports heatwave tolerance in cool-water fish within their core ranges. Populations inhabiting naturally extreme climate analogues may therefore harbour pre-adapted, climate-resilient fish in a future ocean.
Continue reading ‘Thermal history and behavioural plasticity shape reef fish tolerance to marine heatwaves’Physiological responses of coralline algae to climate change
Published 18 September 2026 Science ClosedTags: adaptation, algae, biological response, calcification, community composition, field, laboratory, molecular biology, morphology, mortality, multiple factors, North Pacific, otherprocess, photosynthesis, reproduction, South Pacific, temperature, vents
Ocean acidification and ocean warming are among the most pressing threats to marine ecosystems, with significant implications for calcifying organisms such as crustose coralline algae (CCA). These habitat-forming species play critical ecological roles in reef systems, yet they are particularly vulnerable to ocean acidification and ocean warming. While laboratory studies have documented declines in coralline algal growth and calcification under elevated CO₂ and temperature, less is known about their responses in natural settings where environmental variability and potential acclimatization may modulate stress impacts. Furthermore, the interactive effects of multiple stressors across generations remain poorly understood, limiting our ability to predict ecosystem-level consequences of climate change. This thesis explores the physiological responses of coralline algae to ocean acidification, ocean warming, and marine heatwaves through complementary field and laboratory approaches. Using natural climate analogues, I investigated how CCA communities respond to chronic exposure to low pH and elevated temperatures in situ (Chapters 2 and 3). These natural systems provide unique opportunities to assess long-term acclimatization and identify potentially resilient populations. To disentangle the mechanisms underlying stress responses and examine multi-generational effects, I conducted a multigenerational, multi-stressor laboratory experiment exposing coralline algae to factorial combinations of elevated pCO₂ and temperature over successive generations (Chapter 4). Together, these approaches enabled assessment of single-driver impacts, stressor interactions, and the capacity for phenotypic plasticity and acclimatization under both fluctuating natural conditions and controlled experimental regimes. Results from natural analogues revealed species-specific variation in stress tolerance, with some CCA populations maintaining growth and calcification despite chronic exposure to conditions projected for year 2100. The laboratory experiment revealed that growth significantly declined when exposed to ocean acidification and the combined effect of ocean acidification and ocean warming over multiple generations. This research advances our understanding of how marine calcifiers respond to climate change across ecological and temporal scales. The findings have important implications for predicting ecosystem trajectories and identifying potential climate refugia in an increasingly acidic and warming ocean.
Continue reading ‘Physiological responses of coralline algae to climate change’Coral acclimatization to novel, co-varying stressors is associated with fitness trade-offs
Published 18 September 2026 Science ClosedTags: adaptation, biological response, calcification, corals, field, morphology, mortality, multiple factors, North Atlantic, oxygen, photosynthesis, physiology, respiration, temperature
Reef-building corals are under pressure to acclimatize and/or adapt to multiple co-occurring stressors, including climate change and declines in water quality. However, their capacity to do so is largely unknown. Yet, some corals naturally persist in habitats with multi-stressor conditions which can provide crucial insight into coral adaptive capacity under future ocean conditions. To assess the role of phenotypic plasticity and local adaptation in coral acclimatory responses to novel conditions, we reciprocally transplanted two coral species (Siderastrea siderea, branching Porites) between an inland bay characterized by multiple, co-varying stressors, including warmer seawater temperatures, higher pollution and more variable temperatures, pH and dissolved oxygen concentrations, and an environmentally less extreme, more stable fringing reef. We measured key phenotypic traits (e.g., calcification, tissue biomass, metabolic rates, chlorophyll concentrations) of all transplant groups after 0, 4 and 12 months. Reef-origin corals demonstrated high plasticity when transplanted to the bay, as both species maintained high survival and calcification, and matched bay natives’ other phenotypic traits. Yet, reef-to-bay transplants of both species had reduced photosynthesis-to-respiration ratios in the bay, highlighting the risk of metabolic trade-offs unless compensated for through increased heterotrophy. Conversely, bay-origin corals had enhanced photosynthetic performance but lower calcification on the reef. Reaction norms provided stronger evidence for environmental specialization in bay-origin than reef-origin corals, which could limit their use as stress-tolerant source corals for reef restoration. Overall, our findings suggest multi-stressor variability may promote specialized genotypes, rather than increased phenotypic plasticity, though this may also depend on predictability of environmental variability.
Continue reading ‘Coral acclimatization to novel, co-varying stressors is associated with fitness trade-offs’The effects of single and multiple climate-driven stressors exposures on the seagrass Posidonia oceanica: phenological, cellular, and genetic adaptations
Published 10 July 2026 Science ClosedTags: adaptation, biological response, Mediterranean, phanerogams
Posidonia oceanica is a foundation seagrass species endemic to the Mediterranean Sea, where it forms highly productive meadows that support biodiversity, coastal protection and long-term blue carbon storage. However, these ecosystems are increasingly threatened by the combined effects of climate change and local anthropogenic pressures, including ocean warming, marine heatwaves, ocean acidification, hypersalinity and thermal pollution. Despite growing evidence of the vulnerability of P. oceanica to environmental change, the mechanisms underlying its acclimation capacity, resilience and potential vulnerability thresholds remain only partially understood, particularly under multiple-stressor scenarios.This study investigates the responses of P. oceanica to climate change-related stressors across multiple levels of biological organization, integrating evidence from meta-analysis, controlled mesocosm experiments, molecular analyses and field observations. Special attention is given to the role of environmental history in shaping population-specific responses, comparing plants exposed to contrasting environmental conditions and assessing their phenological, physiological, metabolic and molecular performance under single and combined stressors.By linking organismal, molecular and meadow-scale responses, this work provides new insights into the capacity of P. oceanica to cope with future climate scenarios and local anthropogenic disturbances. The findings contribute to identifying resilience mechanisms and vulnerability patterns in Mediterranean seagrass ecosystems, supporting the development of more effective monitoring, management and conservation strategies under ongoing global change.
Continue reading ‘The effects of single and multiple climate-driven stressors exposures on the seagrass Posidonia oceanica: phenological, cellular, and genetic adaptations’Carbon allocation strategy of Thalassiosira weissflogii in response to elevated pCO2
Published 25 May 2026 Science ClosedTags: adaptation, biological response, laboratory, molecular biology, otherprocess, photosynthesis, physiology, phytoplankton
Diatoms are of significance in the marine ecosystem, playing a pivotal role in the sustenance of marine life and the transfer of carbon from the surface ocean to deeper waters. Although numerous studies have investigated the effects of elevated carbon dioxide (CO2) on marine diatoms across both short- and long-term adaptation scales, the molecular mechanisms governing chitin metabolism in response to ocean acidification remain poorly understood. In this study, we employed an integrated approach combining transcriptomic, metabolomic, and physiological analyses to examine the marine diatom Thalassiosira weissflogii following 40-day acclimation to high-CO2 conditions. Physiological studies have demonstrated that ocean acidification has the capacity to result in an augmentation of the C/N ratio, chitin content, maximum PSII quantum yield (Fv/Fm), and photosynthetic pigment content of T. weissflogii. Analysis of chlorophyll fluorescence dynamics further demonstrated enhanced primary photochemical efficiency of PSII in the acidified treatment group. Consistent with this, the transcriptome results also showed that the photosynthesis-related pathways were upregulated to meet the increased material and energy requirements after adaptation to elevated CO2 levels. More importantly, it was determined that acidification treatment resulted in the upregulation of chitin synthesis and the downregulation of chitin degradation in T. weissflogii, consequently leading to an augmentation in chitin content. These findings indicate that ocean acidification (high CO2, low pH) prompts T. weissflogii to prioritize the allocation of carbon resources to the synthesis of chitin. The synthesis of chitin may reinforce cell wall formation as an adaptive response to ocean acidification. Our research provides new insights into the marine acidification adaptation strategies of T. weissflogii.
Continue reading ‘Carbon allocation strategy of Thalassiosira weissflogii in response to elevated pCO2’Mechanistic drivers of climate-induced reproductive collapse in African catfish: multi-stressor interactions under IPCC scenarios
Published 14 May 2026 Science ClosedTags: adaptation, biological response, fish, laboratory, mortality, North Atlantic, physiology, reproduction
Climate change is increasingly disrupting freshwater ecosystems in sub-Saharan Africa, posing severe threats to the reproductive success and population viability of key fish species. This study investigated the mechanistic effects of elevated temperature across a gradient and the combined impact of elevated temperature, acidification and hypoxia under a simulated future climate scenario (IPCC SSP5-8.5) on the reproductive physiology and early life stages of Clarias gariepinus in the Cross River Estuary. Single-stressor trials examined the effect of temperature (28–38°C) on oestrogen synthesis, cortisol levels and gonadosomatic index (GSI). A combined-stressor scenario (35°C, pH 6.2, dissolved oxygen 2 mg/L) was used to simulate predicted climate conditions. Each treatment was replicated across triplicate tanks, with 10 broodstock per tank, over an 8-week period. Environmental parameters were tightly controlled using aquarium heaters, aerators and pH regulators. Combined stressors markedly disrupted reproductive function. Oestrogen synthesis ceased at 34°C, coinciding with a sharp decline in GSI (r2 = 0.81, p < 0.001). Cortisol concentrations increased fourfold under concurrent heat and hypoxia. Cortisol concentrations increased fourfold under heat and hypoxia co-stress. Larval performance also declined sharply, with prey capture efficiency reduced by 33% at pH 6.0 and cumulative mortality reaching 82% by day 5 under combined-stressor conditions. Habitat suitability models projected a 71% reduction in spawning habitat availability in the estuary by 2070 under the SSP5-8.5 scenario. Genetic screening revealed a significant correlation (r2 = 0.63, p = 0.004) between heat shock protein 70 (HSP70) allele frequency and larval survival, indicating potential for adaptive resilience. These findings suggest a compounded vulnerability of C. gariepinus to climate-related stressors and highlight the potential need for targeted conservation efforts. Recommended interventions include habitat restoration, enhancement of dissolved oxygen regimes and selective breeding programmes to support thermal and hypoxic tolerance in vulnerable populations.
Continue reading ‘Mechanistic drivers of climate-induced reproductive collapse in African catfish: multi-stressor interactions under IPCC scenarios’Responses of reef fish populations to similar environmental changes across distant oceanic islands
Published 9 April 2026 Science ClosedTags: abundance, adaptation, biological response, chemistry, field, fish, otherprocess, South Atlantic
Oceanic islands are among the most remote and understudied regions of the planet, yet they harbour unique reef fish communities that are increasingly vulnerable to global environmental change. Because these islands are geographically isolated, their populations are often assumed to respond mainly to local environmental conditions. However, by analysing temporal patterns in oceanographic variables across two distant systems (3204 km apart) in the South Mid-Atlantic Ridge (both encompassed by marine protected areas—MPAs), we found that temporal alignment in environmental conditions was associated with coordinated shifts in counts of nine reef fish populations in each study area. Among the evaluated variables, pH emerged as the most influential factor. Despite the divergent responses among reef fishes, possibly reflecting differences in physiological plasticity, shared temporal patterns in pH appeared central to parallel population patterns observed across assemblages. Increases in sea surface height and chlorophyll-a played secondary roles, potentially benefiting some populations, although such effects may be transient. These results suggest that climate-driven convergence in environmental conditions can override geographic isolation, promoting similar biological responses that may reduce resilience and increase extinction risk. Given that both islands are legally protected, our findings highlight that even MPAs are not insulated from large-scale oceanographic stressors, underscoring the need for long-term monitoring and adaptative conservation strategies for remote reef systems.
Continue reading ‘Responses of reef fish populations to similar environmental changes across distant oceanic islands’Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea
Published 7 April 2026 Science ClosedTags: adaptation, biological response, field, Mediterranean, molecular biology, mollusks, morphology, otherprocess, physiology, respiration, vents
The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.
Continue reading ‘Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea’Ocean acidification affects the timing of puberty and the reproductive output in a marine temperate fish
Published 2 April 2026 Science ClosedTags: adaptation, biological response, fish, laboratory, morphology, mortality, North Atlantic, otherprocess, reproduction
Ocean acidification (OA) is a major climate-related threat to fish that can disrupt the regulation of the reproductive axis of fish, impacting reproductive success. However, previous studies have only focused on a single reproductive cycle and reported increased fecundity in some species exposed to OA. Since acclimation over several reproductive cycles can occur, it is necessary to evaluate successive reproductive cycles for predicting the actual resilience of species to OA. In this study we assessed the impact of lifetime exposure to different ocean pH/pCO2 levels (Current condition, Moderate OA and High OA) on the sexual maturation and spawning phenology of the European sea bass, over its two first reproductive periods. We tested the hypothesis that OA would exert its greatest impact at the onset of puberty (first reproduction). Accordingly, High OA exposure induced an earlier onset of puberty in both sexes, resulting in a longer spawning period and an increased fecundity. These effects were reduced during the second reproductive season. However, OA affected egg quality and sperm motility profile during the second reproductive season, leading to a total mortality at hatching of embryos spontaneously produced. This mortality was not observed in embryos produced through hormone-induced oocyte maturation and in vitro fertilisation. These results suggest that OA affects the regulation of oocyte maturation and/or the synchronisation of eggs and sperm release. The OA-driven shift in spawning may misalign with optimal environmental conditions for offspring survival. This increases the population’s vulnerability and could favour species whose reproduction is more resilient to OA.
Continue reading ‘Ocean acidification affects the timing of puberty and the reproductive output in a marine temperate fish’Impacts of ocean acidification on marine zooplankton: a review of physiological, developmental, and reproductive responses
Published 31 March 2026 Science ClosedTags: adaptation, biological response, otherprocess, physiology, reproduction, review, zooplankton
Acidification. The increasing levels of carbon dioxide CO₂ in the atmosphere are leading to ocean acidification, and this is altering the chemical content of marine water and is endangering life in the oceans. The examples of marine zooplankton, including Copepods, Pteropods, krill, and larvae of invertebrates are essential to the pelagic food webs and carbon cycles, even though they differ in their tolerance to low PH concentration and high pCO₂ levels. Early developmental phases are particularly vulnerable, with them showing retardation in developmental stages, reduced hatch rates, physical deformities as well as a lack of calcification. Higher carbon dioxide CO₂ levels interfere with the acid-base balance, increase oxidative stress and alter the allocation of metabolism, leading to trade-offs that lower growth, reproduction and survival rates. Calcifying organisms such as the pteropods are highly susceptible whereas some of the non-calcifying copepods exhibit a level of physiological resilience. Negative effects of other stressors may be affected by increased temperature, oxygen depletion, and nutrient enrichment which may further compound negative effects. There is some evidence that there is some possible acclimation in the short term and that there might be transgenerational plasticity but we do not understand adaptive capacity in the long term. Knowledge gaps exist in regard to multigenerational response, non-calcifying and gelatinous species and how physiological plasticity occurs. Species-specific responses are an important aspect of predictive models to estimate the impact of the ecosystem and guide conservation efforts. To ensure marine ecosystems remain stable as ocean acidification continues, vulnerable zooplankton should be safeguarded to preserve tropic structure, nutrient cycling, and nutrient stability.
Continue reading ‘Impacts of ocean acidification on marine zooplankton: a review of physiological, developmental, and reproductive responses’Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions
Published 30 March 2026 Science ClosedTags: adaptation, biological response, laboratory, Mediterranean, mollusks, morphology, multiple factors, otherprocess, porifera, respiration, temperature
Background
Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.
New information
This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.
Continue reading ‘Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions’Stony coral symbioses show variable responses to future ocean conditions
Published 16 March 2026 Science ClosedTags: adaptation, biological response, BRcommunity, community composition, corals, laboratory, mesocosms, multiple factors, North Pacific, otherprocess, phytoplankton, temperature
Coral reefs support over a quarter of marine species and nearly a billion people worldwide but are also among the ecosystems most threatened by anthropogenic impacts. There is long-standing debate about whether coral symbioses will be disrupted or respond adaptively under future ocean conditions. Using a factorial 2.5-year future-ocean mesocosm experiment across eight coral species representing the major coral lineages, we tracked symbiont community shifts within replicate fragments from the same individual coral. Some corals exhibited stochastic divergence consistent with dysbiosis, whereas others showed deterministic, thermally adaptive shifts. Heat stress generally reduced symbiont diversity and promoted predictable restructuring, supporting deterministic processes under moderate stress but stochastic dysbiosis under extreme conditions. We propose that adaptive and stochastic responses represent endpoints along a continuum of host-orchestrated symbiont sorting. This study bridges coral reef ecology with broader host–microbiome theory, offering an integrated perspective on how symbiotic systems may respond to environmental change.
Continue reading ‘Stony coral symbioses show variable responses to future ocean conditions’Eco-evolutionary dynamics of planktonic calcifying communities under ocean acidification
Published 12 March 2026 Science ClosedTags: adaptation, biological response, BRcommunity, calcification, communitymodeling, growth, modeling, mortality, otherprocess, performance, phytoplankton, primary production, zooplankton
Increasing emissions of CO2 into the atmosphere are causing ocean acidification, threatening calcifying organisms. In this study, we model the physiological responses of coccolithophorids to acidification to understand the ecological and evolutionary outcomes of a system in interaction with zooplankton. Assuming a trade-off between growth and protection against grazing, we show that calcification has bivalent effects on transfers between two trophic levels and that acidity can strongly alter energy transfers. Taking into account the evolution of calcifying phenotypes in response to acidification, we show that the system outcome contrasts with previous results. While the effect of evolution depends on how calcification affects grazing, it nevertheless follows that acidification leads to a decrease in calcifying capacity. This evolutionary decrease may be progressive, but can also lead to tipping points where abrupt shifts may occur. Such a counter-selection of calcification in turn affects ecosystem functioning, enhancing energy transfers within the system and modifying carbon fluxes. We discuss how such eco-evolutionary changes may impact food webs integrity, carbon sequestration into the deep ocean and therefore endanger the carbon pump stability.
Continue reading ‘Eco-evolutionary dynamics of planktonic calcifying communities under ocean acidification’
