Posts Tagged 'BRcommunity'

Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms

In contrast to clear stimulatory effects of rising temperature, recent studies of the effects of CO2 on planktonic bacteria have reported conflicting results. To better understand the potential impact of predicted climate scenarios on the development and performance of bacterial communities, we performed bifactorial mesocosm experiments (pCO2 and temperature) with Baltic Sea water, during a diatom dominated bloom in autumn and a mixed phytoplankton bloom in summer. The development of bacterial community composition (BCC) followed well-known algal bloom dynamics. A principal coordinate analysis (PCoA) of bacterial OTUs (operational taxonomic units) revealed that phytoplankton succession and temperature were the major variables structuring the bacterial community whereas the impact of pCO2 was weak. Prokaryotic abundance and carbon production, and organic matter concentration and composition were partly affected by temperature but not by increased pCO2. However, pCO2 did have significant and potentially direct effects on the relative abundance of several dominant OTUs; in some cases, these effects were accompanied by an antagonistic impact of temperature. Our results suggest the necessity of high-resolution BCC analyses and statistical analyses at the OTU level to detect the strong impact of CO2 on specific bacterial groups, which in turn might also influence specific organic matter degradation processes.

Continue reading ‘Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms’

Iron availability modulates the effects of future CO2 levels within the marine planktonic food web

Ocean acidification (OA) due to increased anthropogenic CO2 emissions is affecting marine ecosystems at an unprecedented rate, altering biogeochemical cycles. Direct empirical studies on natural communities are required to analyse the interactive effects of multiple stressors while spanning multiple trophic levels. We investigated the interactive effects of changes in CO2 and iron availability on functional plankton groups. We used mesocosms manipulating the carbonate system from the start to achieve present (low concentration, LC) and predicted future pCO2 levels (high concentration, HC). To manipulate dissolved iron (dFe), half of the mesocosms were amended with 70 nM (final concentration) of the siderophore desferoxamine B (DFB) on Day 7 (+DFB and -DFB treatments). Manipulation of both CO2 and DFB increased dFe compared to the control. During the 22 experimental days, the plankton community structure showed 2 distinct phases. In phase 1 (Days 1-10), only bacterioplankton abundances increased at elevated pCO2. In contrast, a strong community response was evident in phase 2 (Days 11-22) due to DFB addition. Biomass of the coccolithophore Emiliania huxleyi increased massively at LC+DFB. HC negatively affected E. huxleyi and Synechococcus sp., and high dFe (+DFB) had a positive effect on both. The rest of the plankton community was unaffected by the treatments. Increased dFe partially mitigated the negative effect of HC imposed on the coccolithophores, indicating that E. huxleyi was able to acclimate better to OA. This physiological iron-mediated acclimation can diminish the deleterious effects of OA on carbon export and the rain ratio, thus affecting food web dynamics and future ecosystem functioning.

Continue reading ‘Iron availability modulates the effects of future CO2 levels within the marine planktonic food web’

Using prokaryotes for carbon capture storage

Geological storage of CO2 is a fast-developing technology that can mitigate rising carbon emissions. However, there are environmental concerns with the long-term storage and implications of a leak from a carbon capture storage (CCS) site. Traditional monitoring lacks clear protocols and relies heavily on physical methods. Here, we discuss the potential of biotechnology, focusing on microbes with a natural ability to utilize and assimilate CO2 through different metabolic pathways. We propose the use of natural microbial communities for CCS monitoring and CO2 utilization, and, with examples, demonstrate how synthetic biology may maximize CO2 uptake within and above storage sites. An integrated physical and biological approach, combined with metagenomics data and biotechnological advances, will enhance CO2 sequestration and prevent large-scale leakages.


Microorganisms have the ability to respond quickly to environmental changes and to bind CO2, potentially removing it from the surrounding environment.

High-throughput sequencing can be used to identify the microbial metagenomic fingerprint, which can be used to develop simplified, efficient genetic methods to monitor CCS sites.

CCS monitoring would be most effective with a multidisciplinary monitoring program, combining geology, biogeochemistry, physics, microbiology, molecular biology, and genomics.

The advances in our knowledge in prokaryotic genomics, metabolic pathways, microbial communities, and the potential to engineer CO2 binding properties in microbes provide opportunities for transforming CCS sites into bioreactors for value-added chemicals.

Continue reading ‘Using prokaryotes for carbon capture storage’

Twenty years of marine carbon cycle observations at Devils Hole Bermuda provide insights into seasonal hypoxia, coral reef calcification, and ocean acidification

Open–ocean observations have revealed gradual changes in seawater carbon dioxide (CO2) chemistry resulting from uptake of atmospheric CO2 and ocean acidification (OA), but, with few long–term records (>5 years) of the coastal ocean that can reveal the pace and direction of environmental change. In this paper, observations collected from 1996 to 2016 at Harrington Sound, Bermuda, constitute one of the longest time–series of coastal ocean inorganic carbon chemistry. Uniquely, such changes can be placed into the context of contemporaneous offshore changes observed at the nearby Bermuda Atlantic Time-series Study (BATS) site. Onshore, surface dissolved inorganic carbon (DIC) and partial pressure of CO2 (pCO2; >10% change per decade) have increased and OA indicators such as pH and calcium carbonate (CaCO3) saturation state (Ω) decreased from 1996 to 2016 at a rate of two to three times that observed offshore at BATS. Such changes, combined with reduction of total alkalinity over time, reveal a complex interplay of biogeochemical processes influencing Bermuda reef metabolism, including net ecosystem production (NEP = gross primary production–autotrophic and heterotrophic respiration) and net ecosystem calcification (NEC = gross calcification–gross CaCO3 dissolution). These long–term data show a seasonal shift between wintertime net heterotrophy and summertime net autotrophy for the entire Bermuda reef system. Over annual time-scales, the Bermuda reef system does not appear to be in trophic balance, but rather slightly net heterotrophic. In addition, the reef system is net accretive (i.e., gross calcification > gross CaCO3 dissolution), but there were occasional periods when the entire reef system appears to transiently shift to net dissolution. A previous 5–year study of the Bermuda reef suggested that net calcification and net heterotrophy have both increased. Over the past 20 years, rates of net calcification and net heterotrophy determined for the Bermuda reef system have increased by ~30%, most likely due to increased coral nutrition occurring in concert with increased offshore productivity in the surrounding subtropical North Atlantic Ocean. Importantly, this long–term study reveals that other environmental factors (such as coral feeding) can mitigate against the effects of ocean acidification on coral reef calcification, at least over the past couple of decades.

Continue reading ‘Twenty years of marine carbon cycle observations at Devils Hole Bermuda provide insights into seasonal hypoxia, coral reef calcification, and ocean acidification’

Special edition of Estuarine, Coastal and Shelf Science – “Ocean acidification in the Mediterranean Sea: pelagic mesocosm experiments”

The topic of ocean acidification has received extensive attention in a recently published special edition of the journal Estuarine, Coastal and Shelf Science. Volume 186, Part A presents a series of 12 research papers focusing on pelagic mesocosm experiments conducted in the Mediterranean Sea in 2012 and 2013. Plankton plays a key role in the global carbon cycle. It is therefore important to project the evolution of plankton community structure and function in a future high-CO2 world. Several results from experiments conducted at the community level have shown increased rates of community primary production and shifts in community composition as a function of increasing pCO2. However, the great majority of these – experiments have been performed under high natural or nutrient-enriched conditions and very few data are available in areas with naturally low levels of nutrient and chlorophyll i.e. oligotrophic areas such as the Mediterranean Sea, although they represent a large and expanding part of the ocean surface. In the frame of the European Mediterranean Sea Acidification in a changing climate project (MedSeA;, large-scale in situ mesocosms (9 x 50 m3, 12 m deep) have been used to quantify the potential effects of CO2 enrichment in two coastal areas of the Mediterranean Sea: the bay of Calvi (Corsica, France) in June/July 2012 and the bay of Villefranche (France) in February/March 2013. These two experiments gathered the expertise of more than 25 scientists from 7 institutes and 6 countries (France, Greece, Spain, UK, Italy, Belgium, US).

Continue reading ‘Special edition of Estuarine, Coastal and Shelf Science – “Ocean acidification in the Mediterranean Sea: pelagic mesocosm experiments”’

Influence of ocean acidification on plankton community structure during a winter-to-summer succession: An imaging approach indicates that copepods can benefit from elevated CO2 via indirect food web effects

Plankton communities play a key role in the marine food web and are expected to be highly sensitive to ongoing environmental change. Oceanic uptake of anthropogenic carbon dioxide (CO2) causes pronounced shifts in marine carbonate chemistry and a decrease in seawater pH. These changes–summarized by the term ocean acidification (OA)–can significantly affect the physiology of planktonic organisms. However, studies on the response of entire plankton communities to OA, which also include indirect effects via food-web interactions, are still relatively rare. Thus, it is presently unclear how OA could affect the functioning of entire ecosystems and biogeochemical element cycles. In this study, we report from a long-term in situ mesocosm experiment, where we investigated the response of natural plankton communities in temperate waters (Gullmarfjord, Sweden) to elevated CO2 concentrations and OA as expected for the end of the century (~760 μatm pCO2). Based on a plankton-imaging approach, we examined size structure, community composition and food web characteristics of the whole plankton assemblage, ranging from picoplankton to mesozooplankton, during an entire winter-to-summer succession. The plankton imaging system revealed pronounced temporal changes in the size structure of the copepod community over the course of the plankton bloom. The observed shift towards smaller individuals resulted in an overall decrease of copepod biomass by 25%, despite increasing numerical abundances. Furthermore, we observed distinct effects of elevated CO2 on biomass and size structure of the entire plankton community. Notably, the biomass of copepods, dominated by Pseudocalanus acuspes, displayed a tendency towards elevated biomass by up to 30–40% under simulated ocean acidification. This effect was significant for certain copepod size classes and was most likely driven by CO2-stimulated responses of primary producers and a complex interplay of trophic interactions that allowed this CO2 effect to propagate up the food web. Such OA-induced shifts in plankton community structure could have far-reaching consequences for food-web interactions, biomass transfer to higher trophic levels and biogeochemical cycling of marine ecosystems.

Continue reading ‘Influence of ocean acidification on plankton community structure during a winter-to-summer succession: An imaging approach indicates that copepods can benefit from elevated CO2 via indirect food web effects’

A possible CO2 leakage event: Can the marine microbial community be recovered?

Bacterial communities have been studied to a much lesser degree than macrofauna in the case of a CO2 release. The resistance capacity of marine bacteria is well known, but their possible responses and their ability to recover after a CO2 release has not been investigated. Therefore, this work evaluated the responses of a marine bacterial community after 96 h of CO2 exposure under diverse pH treatments (7.8 as control without CO2, 7.0, 6.5, and 6.0) and 24 h after CO2 exposure. Results showed that the respiration activity and the diversity of the community were affected in all pH treatments. However, after 24 h without CO2 enrichment, the respiration activity and diversity increased, showing a partial recovery. Consequently, bacterial responses have the potential to be used as a monitoring tool for risk assessment related to carbon capture and storage techniques or in any similar CO2 enrichment situations.

Continue reading ‘A possible CO2 leakage event: Can the marine microbial community be recovered?’

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Ocean acidification in the IPCC AR5 WG II

OUP book