Posts Tagged 'corals'

Physiology and hydrodynamics influence the susceptibility of reef-building corals to ocean acidification

Published 3 September 2026 Science Leave a Comment
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Ocean acidification (OA) poses a major future threat to tropical coral reefs. This is primarily due to its effects on reef-building coral species, which vary in their susceptibility to this climate change stressor. However, the potential factors underlying the range of susceptibilities observed among reef-building corals remain poorly understood. Therefore, this doctoral thesis investigates the influence of species-specific physiology and water flow conditions on coral susceptibility to OA. Using an experimental, multi-scale approach, the present thesis addresses this knowledge gap in a total of four studies and focuses on the physiological response of three major reef-building coral genera (Acropora, Pocillopora, and Porites) to prolonged exposure of OA conditions (> three months).

The results showed that (1) variable decreases in coral growth under OA were mediated by differential changes in maintenance and cellular stress parameters. This physiological interplay was genus-specific for Acropora and Pocillopora, and was species-specific for Porites spp. Moreover, assessments of the combined effects of OA and changes in water flow conditions indicated that (2) temporarily reduced water flow may mitigate OA effects on Acropora and Porites spp. Still, simultaneous changes in seawater chemistry and flow led to changes in coral physiology with complex and species-specific patterns. Finally, at the microscale, characterisation of the effects of OA and water flow on the concentration boundary layer (CBL) at the coral surface revealed that (3) OA was an overall weak modulator of this layer, regardless of flow conditions and CBL variability among species. Despite minor OA effects, however, the results also suggested that the CBL had a limited OA-buffering capacity due to thin pH gradients across the CBL. Nonetheless, low flow potentially enhanced CBL sheltering from acidified seawater by elevating pH at the coral surface.

In summary, this thesis provides evidence that both species physiology and water flow conditions shape coral susceptibility to OA in species-specific patterns and contributes novel insights into the potential links, between colony and CBL levels, involved in shaping it. Furthermore, the findings of this thesis showcase the potential of low-flow environments as refugia for coral species under OA and highlight the importance of including reef hydrodynamics in future OA scenarios, which will require consideration of different spatial and temporal scales. Altogether, the knowledge provided here may help improve projections of coral community dynamics under future OA and inform conservation efforts.

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Coral reef community structure and photophysiology differ between upwelling and non-upwelling locations on the Pacific Coast of Costa Rica

Published 28 August 2026 Science Leave a Comment
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Reef-building corals and coralline algae form the calcium carbonate frameworks that underpin tropical coral reefs, yet in some locations, coral cover has declined by ~50% in recent decades due to marine heatwaves and other stressors. Identifying refugia environments, such as upwelling systems, that may buffer stress, promote recovery, and could enhance resilience by promoting physiological plasticity that supports thermotolerance is therefore critical. Here, we compared benthic community composition, coral percent cover, and photophysiology between an upwelling location in the Gulf of Papagayo and a non-upwelling location in Sámara on the Pacific coast of Costa Rica. Waters in Papagayo were cooler, more acidic, and had higher chlorophyll-a concentrations. Reefs at this location exhibited higher crustose coralline algae, higher sea urchin abundance, and lower macroalgae cover, compared to Sámara. Papagayo also showed higher stony coral cover, driven by Pocillopora spp., while Sámara was dominated by massive, heat-tolerant Porites spp. Photophysiological parameters were significantly different between locations. Specifically, photosynthetic efficiency (Fv′/Fm′) was 10–45% higher, and maximum photosynthetic rate (Pmax) was 20–40% lower in corals from Papagayo than in those from Sámara. These results reveal that two locations differing in environmental regime within a relatively small geographic area also differ in coral community composition and photophysiological features. Although further research is needed to resolve whether these environmental contrasts shape the observed biological differences, the observed patterns are consistent with the hypothesis that such regimes may support reef persistence or refugia, providing a basis for future work to test this hypothesis directly.

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Early detection of coral reef acidification micro-hotspots driven by offshore energy development

Published 26 August 2026 Science Closed
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Offshore energy development is a key measure to safeguard global energy security. At present, offshore oil and gas, wind power, tidal power and other offshore energy industries are expanding rapidly worldwide. However, large-scale energy activities have become a non-negligible driver of coastal ocean acidification. Carbon emissions generated throughout the full lifecycle of energy facilities locally alter seawater chemistry. This triggers ocean acidification of varying degrees and accelerates the corrosion and degradation of surrounding coral reefs.1,2,3 If population-averaged datasets are adopted to conduct environmental assessments of ocean acidification impacts, it will inevitably fail to identify fine-scale ecological risks to coral reefs induced by energy-related activities.4,5 Undoubtedly, this will become one of the critical bottlenecks restricting the green and sustainable development of offshore energy.

This study targets corals from the South China Sea. We adopt large-view macro-lens infrared thermal imaging. The technique reveals inherent microscale heterogeneity in coral skeletal corrosion susceptibility. The findings provide new technical references for ecological impact assessment, layout optimization and environmental risk control of offshore energy facilities. It also helps promote coordinated development between offshore energy exploitation and marine ecological conservation.

HIGH-PURITY PRIMARY ARAGONITE SKELETON OF GONIOPORA FROM THE SOUTH CHINA SEA

The coral sample used in this study was collected from Wuzhizhou Island, Sanya, South China Sea (Figure 1A). Whole-rock X-ray diffraction (XRD) analysis shows that aragonite is the dominant mineral phase, with a content of 88.5%. This matches the typical mineral composition of pristine coral skeletons. Minor impurities including halite (2.3%), clay minerals (2.3%), dolomite (1.9%), quartz (1.2%), K-feldspar (1.1%), calcite (1.1%), plagioclase (0.9%), and gypsum (0.7%) are also detected in the sample (Figure 1B). Plane-polarized and cross-polarized light micrographs show that the images display regular skeletal frameworks and unevenly distributed pore networks, which lay a structural basis for the spatial differentiation of lattice defects (Figure 1C & D).

Figure 1.  Early detection of coral reef acidification micro-hotspots driven by offshore energy development.(A) Photograph of the intact coral sample collected from the South China Sea; (B) X-ray diffraction pattern, showing dominant primary aragonite with a content of 88.5%, and some minor impurities; (C, D) Plane-polarized and cross-polarized light micrographs; (E) Large-view macro-lens infrared thermal image, with a measured temperature range of 23.60~25.60 °C. The color changes from red for high EBT to purple for low EBT. Dark green areas correspond to the coral pore system, including large corallite cavities, dendritic connected pores and scattered micro-pores. Orange areas represent skeletal matrix with high EBT, which features weak corrosion susceptibility. Bright yellow and light green areas represent matrix with low EBT, acting as acidification micro-hotspots with strong corrosion susceptibility. Sporadic blue spots are residual bubbles formed during thin section preparation, not native skeletal structures.

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Elucidating impact of ocean acidification on coral exoskeletons using an in-situ (S)TEM platform

Published 25 August 2026 Science Closed
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Scleractinian (stony) corals can build highly ordered aragonite (CaCO3) exoskeletons, which are vital for marine ecosystems, coastal stability, and of cultural and economic importance through supporting fisheries and tourism. However, they face multiple challenges through global climate change, unsustainable human activity, and coral-specific diseases. In the latter category, Stony Coral Tissue Loss Disease (SCTLD) has recently emerged as one of the most destructive coral diseases, spreading rapidly and causing widespread tissue mortality across many marine species [1]. We have recently started exploring remnant effects of this disease on Montastraea cavernosa exoskeletons, abundant throughout the Caribbean Sea, Gulf of Mexico, and Atlantic Ocean. Indeed, through use of multi-scale electron diffraction characterization techniques, we find that their skeletogenisis is impacted by this disease from the micro- through atomic scale [2]. Notably, at the nanoscale we observe pockets of more soluble amorphous calcium carbonate (ACC) within centers of calcification (CoCs; i.e. the center of the three-dimensional fans containing arranged elongated aragonite crystals) for healthy corals, which appear absent in STCLD-afflicted corals. At the atomic level, we reveal planar defects in diseased coral, which are much lower in density in healthy corals, presumably inflicted through dysregulation processes after tissue death.

Yet, the most severe threat to global coral reefs and their exoskeletons is climate change. As oceans increase the uptake of anthropogenic CO2 primarily from burning fossil fuels, ocean acidity has increased. The reduction in pH because of this Ocean Acidification (OA) not only reduces the rate of net ecosystem calcification, but also increases net dissolution of skeletons. At current trends, most coral exoskeletons are expected to dissolve starting in 2050 [3]. Currently, it is unclear how exactly (the onset of) dissolution proceeds and affects their aragonitic framework. Given our expertise in characterization of coral skeletons, herein we discuss a developed in-situ platform to investigate OA effects at the nanoscale.

As proof of concept, we sandwiched crushed geological aragonite nanoparticles between own fabricated SiNx-based chips, compatible with a Protochips Atmosphere gas cell holder [4]. Thereafter, we introduced water vapor at 14 Torr at room temperature (∼60% relative humidity) for 10 minutes to create a hydrated environment for the particles (Fig. 1b). In a third step, we introduced gaseous CO2 at a pressure of 1 atm (Fig. 1c). The formed unstable carbonic acid produces HCO3– and H+, which increases acidity (i.e. lowers pH). Indeed, we observe rapid dissolution of aragonite particles after CO2. While we expect roughly a pH ∼4 in this system, this experimental observation matches theoretical expectations that aragonite would dissolve under these conditions (Fig 1c-f). We further observe nucleation and growth of new particles in a dendritic fashion in the vicinity of the dissolved particles (Fig 1c-f). Likely, this is crystallization of calcite, the most stable crystalline polymorph of CaCO3, induced by local dissolution of aragonite [5]. Although pCO2 in the oceans is expected to be much lower (∼400 – 500 µatm) and thus dissolution timescales are expected to shift, this illustrates our platform can capture aragonite dissolution.

To expand our platform methodology, using conventional Ga+ FIB-methods, we prepared a lamella of geological aragonite with a thinned region (∼100 nm), which was then transferred on top of a SiNx-based chip, and attached this in one of the corners between the Si support and the SiNx layer (Fig. 2a). We were able to sandwich the lamella between both chips when observing the cell in the TEM (Fig 2b,c). Next, we will target healthy and STCLD-afflicted coral sections to investigate how nanoscale dissolution proceeds at/near more soluble areas including defects due to the devastating OA process. This understanding may allow for more accurate forecasting of marine ecosystem collapse, enabling targeted mitigation strategies, protecting food supplies, and predicting climate feedback loops [6].

Fig. 1. In-situ OA platform experiment showing TEM snapshots of: a) Initial geological aragonite nanoparticles. Inset: selected area diffraction pattern indicating aragonite spots. b) Introduction of water vapor (14 Torr) after 10 min. The white arrow indicates an apparent hydration layer surrounding the large particle. c) Introduction of CO2 at 1 atm pressure after 10 s. d) 60s e) 90s and f) 150s. White arrows in c-f) mark the outer layer of the large particle dissolving in time, red arrows illustrate growth of new crystals.

Fig. 2. a) SEM image of geological aragonite lamella attached to SiNx chip. b) TEM image of lamella after cell assembly (top and bottom chip). c) In-situ selected area diffraction pattern of the lamella.

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The molecular footprint of global change in Antarctic coral

Published 21 July 2026 Science Closed
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Anthropogenic CO2 emissions are altering marine ecosystems through two interconnected processes: climate change and ocean acidification, both of which are particularly affecting the Southern Ocean. However, the molecular responses of cold-water corals to these stressors remain poorly understood. In this study, we investigated the transcriptomic response of the Antarctic coral Malacobelemnon daytoni exposed to ocean acidification (pH ~7.7; LpH) and elevated temperatures (+2°C and +4°C above ambient; T1 and T2, respectively) under controlled laboratory conditions. Using high-throughput RNA sequencing (RNA-Seq), we compared gene expression profiles across six treatments, including a control (pH ~8.1, CpH; 0–1°C; CT), acidification, warming, and their combinations. Principal component analysis revealed treatment-specific clustering and greater transcriptomic dispersion under LpH conditions. Differential expression analysis identified between 475 and 767 differentially expressed genes (DEGs), with the strongest transcriptional responses observed under combined stress conditions (LpH + T1 and LpH + T2). Combined exposure to ocean acidification and warming elicited the largest gene expression response, suggesting enhanced, potentially non-additive effects of multiple stressors. Functional enrichment analyses revealed differential regulation of genes associated with protein folding, signal transduction, energy metabolism, oxidative stress, and regulation of cell death. Our findings demonstrate that Malacobelemnon daytoni exhibits complex, treatment-dependent gene expression responses to environmental stressors. These results highlight the capacity of this Antarctic octocoral to mount molecular responses to projected future ocean conditions while also emphasizing its potential vulnerability to the interacting effects of ocean warming and acidification.

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Coral carbonate pH records show localized stability within Philippine waters

Published 20 July 2026 Science Closed
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The process of decreasing seawater pH due to increasing atmospheric carbon dioxide known as ocean acidification is a global phenomenon with very strong regional effects. We report the first seasonal and interannual carbonate chemistry variabilities in the Philippines determined using carbonate boron systematics. Coral δ11B-pHsw from two contrasting site conditions showed more positive trends than basin-wide averages, suggesting that reef waters around the Philippines represented by these sites may be offsetting the general pH decline in global seawater. This pattern is consistent with δ11B-pHsw studies in neighboring Palau and Taiwan and can be explained by decreases in net ecosystem calcification and/or increases in net ecosystem productivity. Other potential site-specific local drivers of δ11B-pHsw changes include vent-driven input of nutrient- and CO2-rich groundwater that alters seawater dissolved inorganic carbon (DIC). The El Niño Southern Oscillation that influences water mass movement along the Philippine Pacific seaboard, and seasonal zonal current reversal in the Verde Island Passage (VIP) that switches source waters within the VIP, may also contribute to the recorded changes in δ11B-pHsw. Differences between the coral internal fluid chemistry and modelled regional seawater pH trends highlight the importance of localized monitoring of acidification for accurate management strategies of reef habitats.

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Assessing early oil industry awareness of the impacts of fossil fuels on coral reefs using a novel AI agent

Published 3 July 2026 Science Closed
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Global warming threatens to eradicate Earth’s tropical corals. As legal interventions addressing climate change expand, fossil fuel companies’ historical awareness of their products’ damaging effects is increasingly important. We searched historical documents using a large-language-model-based agent, finding that carbon majors were aware by the 1980s of prospective impacts of fossil fuels on corals from ocean acidification, marine heatwaves, sea-level rise, and intensified storms and later funded efforts downplaying such impacts.

Introduction

The world’s tropical coral reefs are under imminent threat of collapse from global warming. Living corals have declined by approximately 50% worldwide since the 1990s, with global warming now the greatest threat to future survival1. Global warming kills corals primarily through increased ocean temperatures and more frequent and intense marine heatwaves, which cause coral bleaching (loss of coral symbionts), exacerbated by ocean acidification (from increased carbon dioxide levels), which weakens coral health, and intensified storms (from increased sea surface temperatures), which physically destroy coral assemblages, all ultimately caused by fossil fuels1. Approximately one billion people worldwide depend directly on coral reefs for livelihoods, food security, and protection from storms and coastal erosion, and coral reefs provide shelter and nourishment to over 30% of the world’s named marine species2. Economically, coral reefs provide an estimated 10 trillion USD per year in ecosystem services, including tens of billions of dollars per year in coral reef tourism3, and potential efforts to restore reefs lost over the last decade alone have been estimated to cost around 1 trillion USD2. Mass coral bleaching and mortality from marine heatwaves driven by global warming is ongoing4. The Intergovernmental Panel on Climate Change (IPCC) predicts mortality of 70—90% of the world’s reef-building corals at global warming of 1.5 °C and mortality of more than 99% at 2 °C1.

Legal interventions may play a critical role in helping to protect the world’s coral reefs and associated ecosystems (for example, by securing funding for reef monitoring and rehabilitation) and in compensating affected communities for economic losses associated with climate-change-driven coral impacts. In this context, the history of fossil fuel industry awareness of the foreseeable impacts of climate change on coral reefs is highly relevant. Climate lawsuits against governments, fossil fuel producers, and other parties have expanded in number and sophistication over the past decade5 and have recently cited impacts on coral reefs6. Additionally, the 2024 and 2025 advisory opinions from the International Tribunal for the Law of the Sea (ITLOS)7 and the International Court of Justice (ICJ)8 on climate change clarified, respectively, that greenhouse gases are marine pollutants under the United Nations Convention on the Law of the Sea (UNCLOS) and that best efforts to attain the 1.5 °C warming limit of the United Nations Framework Convention on Climate Change (UNFCCC) Paris Agreement are legally binding on governments under international law, strengthening the basis for legal actions seeking to mitigate global warming and obtain reparations for damages. Research on the fossil fuel industry’s internal knowledge of global warming9, public-facing denial and minimization of the problem10,11, and false assurances to be solving it12 has clarified global warming as not only a scientific and technological problem but also one of corporate corruption subject to legal correction and remedy13. Such research has so far informed dozens of ongoing legal actions seeking industry accountability for climate change14.

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Skeletal porosity of a cold-water coral increases with decreasing aragonite saturation state along a depth gradient in the Mediterranean Sea

Published 29 June 2026 Science Closed
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Background

Cold-water corals (CWCs) are key ecosystem engineers that create complex three-dimensional habitats much like tropical reefs, but in deep, cold seas. However, like other reef-building systems, they are increasingly threatened by climate change and ocean acidification. CWC communities in the Mediterranean Sea may be especially vulnerable because these waters absorb more atmospheric CO2 than the global ocean, making it a mesocosm that mirrors broader global trends affecting marine life. Since calcification is energetically costly and likely becomes even more demanding as pH and carbonate ion availability decline, understanding how the decrease in aragonite saturation state (Ωarag) affects biomineralization is essential for predicting the future of these corals.

Results

Here, we investigated skeletal structural and compositional changes of the scleractinian CWC Desmophyllum dianthus along an Ωarag gradient in the Mediterranean Sea using specimens collected between 400 and 1200 m depth. Our findings indicate that skeletal porosity increases at the macro-scale with decreasing Ωarag, while micro- and nano-scale structural and compositional features remained unaffected.

Conclusions

The persistence of micro- and nano-scale skeletal features across an 800 m depth gradient suggests that D. dianthus maintains tight biological control over mineralization at these scales, even as Ωarag declines. This control does not extend to the macro-scale, where increasing porosity alters the skeleton’s overall architecture under lower Ωarag. D. dianthus thus appears to preserve the fundamental “building blocks” of its skeleton while changing its larger-scale structure, a decoupling that may make macro-scale porosity an early marker of acidification stress in CWCs.

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Lithium isotopes reveal impaired ion transport in tropical corals exposed to high pCO2

Published 26 June 2026 Science Closed
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Ocean acidification, driven by rising atmospheric CO₂, threatens the ability of corals to build their skeletons by reducing their capacity to maintain an elevated pH at the calcification site (pHcf), a process essential for calcium carbonate precipitation. Boron isotopes have commonly been used to show that the response of pHcf to ocean acidification is highly species-specific. However, the physiological mechanisms underlying this variability remain poorly understood. Recently, lithium (Li) isotopes have been used to trace the activity of ionic transport involved in cellular pH regulation and calcification (e.g. H+, Na+ and Ca2+), and may therefore help resolve these mechanisms. Here, we investigate multiple coral species from Tutum Bay (Papua New Guinea), a natural CO₂ seep system creating pH gradients (mean pHT = 7.66 at seeps vs. 8.01 at control sites) analogous to future ocean acidification scenarios. Our results show a relationship between seawater pH, calcifying fluid chemistry, and lithium isotopic composition. Corals exposed to low seawater pH exhibit significantly altered δ⁷Li values relative to colonies from the control site, with some species becoming enriched in ⁷Li (up to 2‰) as pHcf declines. This isotopic shift is consistent with reduced efficiency of Na⁺/H⁺ exchangers (NHEs), active transporters that preferentially incorporate the lighter ⁶Li isotope under optimal conditions but may become less effective under elevated proton concentrations. By linking Li isotopes to calcifying-fluid chemistry, these results provide geochemical evidence that ocean acidification may disrupt ionic regulation in corals and that Li isotopes can help to resolve biogeochemical controls of carbonate-systems.  

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Marine invertebrates and fishes exhibit inconsistent body size responses to ocean acidification

Published 18 June 2026 Science Closed
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Body size is a fundamental characteristic of all living organisms that determines physiological functions and life-history traits. Ecological theory predicts that ocean acidification can cause body size reductions, confirmed by several studies reporting miniaturization in ectotherms. Based on this prediction, we would expect a broad suite of species to show similar plastic body-size responses to elevated CO2. Using four natural climate change analogues of ocean acidification across the northern and southern hemispheres, we quantified body size alterations across 18 marine invertebrate and fish taxa to test for climate-driven miniaturization. Only three species consistently showed body-size reductions under ocean acidification: one urchin and two fish species. In contrast, 15 other species, ranging from highly calcified to non-calcified, displayed unchanged or increased body sizes or inconsistent miniaturization. If body-size miniaturization responses were consistently reproducible across taxa we would have observed it more frequently, suggesting that species responses to ocean acidification are more variable than previously thought and likely vary depending on a species’ physiology and life history. Thus, rather than entire communities undergoing miniaturization, species are likely to display a spectrum of responses, with some exhibiting size reductions, others demonstrating physiological resistance to elevated CO2, and others potentially benefiting from the indirect effects of ocean acidification.

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Geographic variation in proteomic responses to ocean acidification in a cold-water coral (Balanophyllia elegans)

Published 16 June 2026 Science Closed
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In the face of a rapidly changing climate, assessing organismal responses to future stressors in the context of current, natural exposure to stress could provide key insights to understanding marine ecosystem resilience. I used Balanophyllia elegans, a cold-water, solitary, azooxanthellate coral as a model to better understand how varying oceanographic conditions across its geographic range have shaped its ability to tolerate and potentially adapt to current and future ocean acidification conditions. I collected B. elegans individuals from four sites across 2,500km of their range and subjected them to two pH treatments to investigate site-specific protein expression in response to low pH. Using proteomic analysis, I found that corals from each site responded differentially to low pH, mainly through changes in regulation of metabolism, calcification, and homeostasis-related proteins. Additionally, health condition varied significantly between sites after exposure to low pH, providing further evidence of site-specific responses. These results demonstrate site-specific variation in responses and tolerance to low pH, a pattern that could inform future investigations into environmental-driven adaptive expression. Such site-specific responses highlight the importance of multi-source studies for predicting a species’ ability to navigate future climate changes.

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Large CO2 seeps and hydrate field on the seafloor offshore Mayotte Island

Published 16 June 2026 Science Closed
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Gas hydrates modulate methane and carbon dioxide benthic fluxes into the ocean and usually occur embedded in the sediment. Here we use acoustic surveys alongside optical and geochemical observations from remotely operated vehicles to show that CO2 hydrate mounds are forming directly on the seafloor atop a large liquid CO2 vent field offshore Mayotte Island. The venting, which initiated following volcanic activity in 2018, deleteriously impacts surrounding coral communities due to local acidification.

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High-resolution reconstruction of the pH-upregulation and its seasonal drivers in the temperate coral Cladocora caespitosa

Published 12 June 2026 Science Closed
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Ocean acidification (OA) and associated changes in seawater carbonate chemistry, combined with thermal stress, hampers coral calcification. By upregulating pH and dissolved inorganic carbon, corals can optimize their calcification, giving them some resilience to OA. Little is known about the seasonal- and interannual‑scale impacts of thermal stress and OA on pH upregulation and calcification in the temperate coral Cladocora caespitosa, despite it being the only zooxanthellate reef builder in the Mediterranean Sea. δ¹¹B and B/Ca were determined seasonally in C. caespitosa skeletons from two NW Mediterranean sites to reconstruct the effect of seawater temperature and pH on the carbonate chemistry of the coral calcifying fluid (CF), at a bimonthly resolution from June 2013 to August 2017 (Columbretes Islands, Spain), and June 2016 to February 2022 (Villefranche-sur-Mer, France). Cladocora caespitosa displayed a similar pH upregulation strategy to most tropical corals, albeit with an apparently lower sensitivity to seasonal environmental change. Temperature was the main driver of seasonal variability in the CF composition and coral calcification, with seawater pH having a comparatively lower seasonal variability, and acting on longer timescales. While longer coral records and investigations into inter-population variability would still be beneficial in order to fully understand the response of C. caespitosa to environmental change, our records constitute an important first step in understanding the biomineralization strategy of this ecologically important coral species.

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Ocean acidification alters hypoxia sensitivity and oxyregulation in reef-building corals

Published 9 June 2026 Science Closed
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Coastal marine ecosystems are increasingly threatened by multiple stressors such as ocean acidification and deoxygenation, but how these co-occurring stressors interact is often poorly understood. This is especially true for tropical coral reefs where deoxygenation is an emerging yet understudied threat. Using hypoxia response curves combined with rigorous pH control, we show that acidification alters hypoxia sensitivity and oxyregulation of reef-building corals in a species-specific manner: three species exhibited increased sensitivity to various degrees, while the fourth showed enhanced tolerance. Consequently, acidification pushes critical hypoxia thresholds into oxygen regimes already prevalent on reefs today, potentially driving shifts in community composition and accelerating risks to reef resilience as these stressors intensify in the future. Our findings challenge assumptions of uniform coral vulnerability under multi-faceted climate change, emphasizing the need for trait-based approaches and to account for stressor interactions in predictive models to better anticipate coral reef futures under rapid climate change.

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Seasonal upwelling shapes coral reef community structure and photophysiology on the Pacific Coast of Costa Rica

Published 3 June 2026 Science Closed
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Reef-building corals form the calcium-carbonate frameworks that underpin tropical coral reefs, yet global coral cover has declined by ~50% in recent decades, due to marine heatwaves and other stressors. Identifying refugia environments, such as upwelling systems, that buffer stress, promote recovery, and enhance resilience by promoting physiological plasticity that supports thermotolerance is therefore critical. Here, we compared benthic community composition, coral percent cover, and photo-physiology between an upwelling location in the Gulf of Papagayo and a non-upwelling location in Sámara on the Pacific coast of Costa Rica. Waters in Papagayo were cooler, more acidic, and richer in chlorophyll a. Reefs at this location exhibited higher crustose coralline algae, higher sea urchin cover, and lower macroalgae cover, compared to Sámara. Papagayo also showed higher stony coral cover, driven by Pocillopora spp., while Sámara was dominated by massive, heat-tolerant Porites spp.. When significant, photophysiological measurements showed 9.7 – 44.5% higher photosynthetic efficiency (Fv’/Fm’) in Papagayo corals and 19.94 – 42.75 % higher maximum photosynthetic rates (Pmax) in Sámara corals. These results highlight how contrasting environmental regimes within a relatively small geographic area can shape distinct coral community compositions and photophysiological strategies, with implications for identifying areas of reef persistence or refugia.

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Hydrodynamic control of coral metabolism: a coupled modeling approach linking flow, physiology, and reef-scale biogeochemistry

Published 2 June 2026 Science Closed
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Tropical coral reefs exhibit high variability in coral metabolism, driven by complex interactions among physical, chemical, and biological processes. Understanding the spatiotemporal patterns of coral metabolism and their drivers is critical, as such variability may underpin corals’ adaptive capacity to withstand a warming and acidifying ocean. Here, we use a coupled hydrodynamic–biogeochemical–physiological model to investigate spatial and diel variations in coral metabolic processes (photosynthesis, respiration, and calcification) across Moorea’s north shore reef system under three prevailing wave regimes. We find that photosynthesis varies little across the reef, whereas respiration and calcification show pronounced spatial heterogeneity. These spatial patterns closely mirror the ones in seawater carbonate chemistry and depend strongly on wave-driven flow. Hydrodynamics regulate diffusive exchanges between coral tissues and surrounding seawater, and eventually generate distinct internal chemical environments (in the coelenteron and calcifying fluid) across the reef. Landward reef regions exhibit the greatest spatial and diel variability in coral metabolism. Low-wave, slow-flow conditions amplify metabolic fluctuations throughout the reef, but more strongly in the landward regions. Overall, our results highlight how interactions among transport processes, carbonate chemistry, and coral physiology produce strong day-night fluctuations and spatially heterogeneous but structured metabolic patterns across the reef, which vary systematically with wave conditions.

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A review of volcanic activity and the evolution of coral reefs

Published 27 May 2026 Science Closed
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Coral reefs are among the most extraordinary ecosystems on Earth. They are living structures built by countless tiny polyps, yet they rival tropical rainforests in biodiversity, productivity, and ecological importance. They are subject to global, well-known, nonhuman disturbances, such as intense ocean currents, storm impacts, extreme weather events, climatic variations, disease, and predator outbreaks. They are recognized by the global human society for their care and preservation in a variety of Protected Areas. Coral reefs are also affected by the deleterious effects of diverse human activities, including local activities such as fisheries and tourism, and regional activities such as deforestation – illustrated by the unexpected impact of large logs on the coral crest – agriculture, the oil industry, coastal urban development, river outflow quality and quantity, nutrients, and contaminants. These factors collectively cause a harmful synergistic effect. Additionally, coral reefs are vulnerable to the long-term effects of climate change, including sea level rise, acidification, and high temperatures. Over evolutionary timescales, several forces have shaped coral reefs. For instance, Hamilton et al. [1] note that deforestation on tropical islands releases sediments that travel through rivers into the ocean. These sediments settle into reef crevices, effectively “suffocating” the habitat. Furthermore, this research emphasizes that water quality is degraded not only by land-based runoff (sedimentation) but also by the transport of agricultural nutrients. These nutrients promote macroalgal blooms, which directly compete with coral for space and sunlight. Knowledge of volcanic activity today still focuses on human risk to infrastructure and human life, while attention to potential effects on natural resources remains minimal. For example, Loughlin et al. [2] discuss how risk is calculated based on “Exposure” and “Vulnerability,” traditionally measured by human population density and capital assets.

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Present and future seawater CO2 chemistry across multiple coral reef habitats and scales at Dongsha Atoll and Taiping Island in the South China Sea

Published 22 May 2026 Science Closed
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Coral reefs consist of diverse benthic habitats that influence seawater CO2 chemistry variability on multiple spatial and temporal scales. Understanding the present-day seawater CO2 chemistry variability across both habitat-specific and reef-wide scales is critical to accurately predict the effects of future environmental change. Here, we utilize autonomous sensors and discrete seawater samples across diverse habitats at multiple scales ranging from habitat-specific (inner lagoon, patch reefs and seagrass beds; 0.02–0.72km2) to reef-wide scales at Dongsha Atoll (250km2) and Taiping Island (20km2) to characterize seawater chemistry. Across all habitats, daily mean pH ranged from 7.79–8.60 with mean diel variability ranging from 0.19–0.91. Spatially, pH variability ranged from 0.08 (patch reef) to 1.29 (inner lagoon). Biogeochemical modification of seawater chemistry was dominated by organic carbon cycling at individual habitat scales, whereas inorganic carbon cycling dominated at the scale of Dongsha Atoll. The largest alkalinity depletion (net calcification) was associated with patch reef habitats, whereas the highest alkalinity repletion was associated with a semi-enclosed lagoon. Under two climate change scenarios (linear dissolved inorganic carbon increase derived from historical observations and the CMIP6 SSP5-8.5 pathway), pH and/or aragonite saturation state (ΩAr) observations across all habitats in this study are projected to be below proposed thresholds for net reef accretion (pH < 7.7: inner lagoon ~ 10–13%; seagrass beds ~ 21–44%; patch reefs ~ 0–100%; atoll-wide ~ 4–98% of observations) or net dissolution (ΩAr < 2.92: inner lagoon ~ 10–18%; seagrass beds ~ 44–75%; patch reefs ~ 77–100%; atoll-wide ~ 94–100% of observations) by the year 2100. The results highlight the importance of habitat-specific and scale-conscious assessments of future coral reef environmental conditions.

Continue reading ‘Present and future seawater CO2 chemistry across multiple coral reef habitats and scales at Dongsha Atoll and Taiping Island in the South China Sea’

Ocean acidification, more than warming or heatwaves, constrains shoaling behaviour in a range-extending fish through habitat simplification

Published 18 May 2026 Science Closed
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  1. Social context is a critical yet underexplored determinant of behavioural resilience to climate change. Group living can buffer individuals against environmental stress through enhanced vigilance, reduced predation risk and improved foraging efficiency.
  2. However, whether these behavioural expressions persist under chronic (warming, acidification) and acute (marine heatwaves) climate stressors remains unclear. Using natural climate analogues spanning present-day, ocean warming and combined warming–acidification reefs, we quantified how shoal size influences behavioural expression in a range-extending reef fish (Pomacentrus coelestis).
  3. Across all climate conditions, fish in larger shoals consistently exhibited higher foraging and activity levels and reduced risk-avoidance behaviours, whereas direct effects of warming, acidification and heatwaves on behaviour were negligible.
  4. In contrast, ocean acidification most likely constrained collective behaviour indirectly by simplifying benthic habitats, where fish densities were 84% lower than at the warming reef, resulting in shoals that were up to 79% smaller than the Warming and Control reefs.
  5. Combined, our data suggest that shoal size mediates behavioural expression between foraging and predator avoidance and that acidification-driven habitat simplification can alter behavioural expression indirectly by reducing fish densities and the formation of large shoals.
  6. We conclude that climate change can indirectly modify behavioural expression in shoal-forming fishes through habitat-driven erosion of social structure.
Continue reading ‘Ocean acidification, more than warming or heatwaves, constrains shoaling behaviour in a range-extending fish through habitat simplification’

High-resolution temporal biogeochemical variations in a seagrass-coral cohabitate ecosystem: day-night, rain, and coral spawning

Published 14 May 2026 Science Closed
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Highlights

  • Seagrass-coral habitats act as CO2 sources driven by intense nighttime respiration
  • High-resolution data enable predictive modeling of DIC, DOC, and POC dynamics
  • Metabolic cues govern DIC, while temperature and alkalinity regulate POC and DOC
  • Episodic coral spawning and rainfall trigger rapid ocean acidification
  • Short-term disturbances dramatically shift organic and inorganic nutrient loads

Abstract

Seagrass meadows and coral reefs are global hotspots for productivity, yet they are often studied in isolation despite their intense biogeochemical connectivity. Significant gaps remain in understanding how coupled inorganic and organic processes within the water column drive blue carbon services in such mixed habitats, particularly during rapid environmental disturbances. Here, we investigated a unique, intertwined ecosystem in the Dongsha Atoll, where massive Porites corals are distributed on seagrass meadows, creating a natural laboratory for studying water column carbon biogeochemistry. During a 10-day sampling period, we collected continuous hydrological and discrete biogeochemical data at two- to four-hour intervals. Our results reveal that the dissolved inorganic carbon (DIC) covaried with dissolved oxygen and pH in strong diurnal patterns, which were governed by photosynthesis and respiration. As an outcome, variable but mostly high pCO2 values (141–2070 μatm) indicate the seagrass meadow was a source of CO2 to the atmosphere due to strong night-time respiration. Particulate organic carbon (POC) increased with temperature but showed no diurnal pattern. Dissolved organic carbon (DOC) showed a weak diurnal pattern and was linked to variations in POC and total alkalinity, highlighting the tight coupling between the organic production of the meadow and the inorganic chemistry of the calcification framework. Additionally, coral spawning led to a surge in organic content and changed inorganic nutrient levels. Rainfall events significantly acidified the ocean and enhanced submarine groundwater discharge to the seagrass-coral habitat. The distinctive contributions of this study are the extremely high temporal resolution of discrete samples, allowing the simultaneous tracking of multiple organic and inorganic pools during natural disturbances. The high-resolution data provide fundamental information for parametrizing models that explain DIC, POC, and DOC, which yield insights into organic carbon cycling in seagrass meadow-coral habitats.

Continue reading ‘High-resolution temporal biogeochemical variations in a seagrass-coral cohabitate ecosystem: day-night, rain, and coral spawning’

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