Elevated CO₂ is a common water-quality challenge in recirculating aquaculture systems. Although its effects are often accompanied by environmental acidification, the direct impact of elevated CO₂ under stable-pH conditions on fish olfactory function remains poorly understood. This study investigated the effects of elevated CO₂ on olfactory function and olfactory epithelial homeostasis in juvenile largemouth bass (Micropterus salmoides). Fish were exposed to approximately 5 mg L−1 (control), 10 mg L−1, and 15 mg L−1 CO₂ for 4 days while maintaining stable pH. Olfactory function and olfactory epithelial responses were evaluated using behavioral assays, calcium imaging, histological analyses, Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) staining, immunofluorescence, and gene-expression analyses. Exposure to 10 and 15 mg L−1 CO₂ significantly reduced attraction to food odor without affecting swimming activity, indicating impaired olfactory sensitivity. Calcium imaging revealed attenuated olfactory responses to L-alanine, accompanied by altered expression of genes involved in olfactory signal transduction. Elevated CO₂ also increased the number and area of acidic mucous cells, reduced the abundance of mature olfactory sensory neurons, increased apoptosis in the olfactory epithelium, and altered the expression of genes associated with apoptosis, cell proliferation, and neurogenesis. These findings indicate that elevated CO₂ under stable-pH conditions impairs olfactory function and disrupts olfactory epithelial homeostasis in juvenile largemouth bass. The present study demonstrates that dissolved CO₂, independent of environmental acidification, adversely affects the fish olfactory system and highlights the importance of monitoring CO₂ as a key water-quality parameter in recirculating aquaculture systems.
Continue reading ‘High CO2 at stable pH disrupts olfactory homeostasis and function in largemouth bass’Posts Tagged 'biological response'
High CO2 at stable pH disrupts olfactory homeostasis and function in largemouth bass
Published 6 October 2026 Science ClosedTags: biological response, fish, laboratory, molecular biology, performance, physiology
Mitigation of biogenic acidification via increased total alkalinity in high stocking density culture waters of Strongylocentrotus intermedius: effects on growth and metabolism
Published 6 October 2026 Science ClosedTags: biological response, chemistry, echinoderms, fisheries, growth, laboratory, mitigation, morphology, physiology, reproduction
Highlights
- Biogenic acidification increases with stocking density in sea urchin culture.
- Total alkalinity mitigates acidification and promotes growth and gonadal development.
- Higher alkalinity shifts metabolism toward biosynthesis and energy storage.
Abstract
Among cultured sea urchins in China, Strongylocentrotus intermedius has the highest annual production, with seed production and grow-out primarily conducted under high-density intensive conditions where biogenic acidification readily develops. To investigate its development, effects, and mitigation, we conducted a short-term incubation experiment (1 d) and a 20-day cultivation experiment. In the short-term incubation experiment, a control group with initial pH ≈ 8.1 and TA ≈ 2300 μmol/kg and a TA-elevated group with initial pH ≈ 8.1 and TA ≈ 3600 μmol/kg were established, and sea urchins were cultured across a density gradient of 20–80 g/3 L. In the 20-d experiment, stocking density was 88 g/3 L with the same initial pH and TA settings. The short-term experiment showed that seawater acidification occurred in the control group, and stocking density was significantly correlated to pCO2, ΔpH (pH reduction), TA–DIC, and Ωarag. With increasing stocking density, pCO2 increased significantly, whereas ΔpH and TA–DIC significantly decreased simultaneously. In the TA-elevated group, all parameters except pCO2 were higher than those in the control group across all stocking densities. At the lowest stocking density, ΔpH, TA–DIC, and Ωarag in the control group were −0.09 ± 0.01, 111.48 ± 1.73 μmol/kg, and 1.43 ± 0.00, respectively, whereas the corresponding values in the TA-elevated group were 0.11 ± 0.01, 252.26 ± 6.98 μmol/kg, and 3.23 ± 0.08. These results indicate that increasing TA mitigates biogenic acidification and works to strengthen the buffering capacity of the carbonate system. At the end of the 20-day cultivation experiment, urchins from the TA-elevated group showed significantly higher specific growth rate (1.60 ± 0.08% vs. 1.27 ± 0.06%), weight gain rate (37.72 ± 2.25% vs. 29.04 ± 1.48%), and gonad index (6.09 ± 1.58% vs. 3.54 ± 0.49%) than those from the control group. Metabolomics analysis revealed that TA elevation enriched pathways related to protein biosynthesis, glycerophospholipid metabolism, and sphingolipid signaling, with higher abundances of essential amino acids (L-methionine, DL-isoleucine), sphingomyelins, and the antioxidant indole-3-pyruvic acid. In contrast, the oxidative stress marker DL-2-aminoadipic acid was upregulated in the control group. Overall, increasing seawater TA mitigates biogenic acidification in high-density sea urchin culture, shifting metabolism from stress defense toward biosynthesis and reserve accumulation, thereby supporting growth and gonadal development in juvenile sea urchins.
Continue reading ‘Mitigation of biogenic acidification via increased total alkalinity in high stocking density culture waters of Strongylocentrotus intermedius: effects on growth and metabolism’Single-larva transcriptomics resolve phenotype-anchored Na+ K+ ATPase expression during first shell formation in Pacific oyster larvae under ocean acidification conditions
Published 5 October 2026 Science ClosedTags: biological response, laboratory, methods, molecular biology, mollusks, physiology
Bivalve larvae are highly sensitive to ocean acidification (OA) conditions, a global climate shift that applies selective pressure on calcareous marine organisms. Although a growing body of work exists on the effects of OA on bivalve larvae, most studies rely on pooled-larval sampling, which may obscure gene expression patterns by including larvae with severely underdeveloped or deformed phenotypes, which are common in OA conditions but are unlikely to survive to metamorphosis. Here, we tested a combination of single-larva transcriptomic techniques to investigate the expression of a candidate gene previously shown to be upregulated in OA conditions, Na+ K+ ATPase (NKA), in Pacific oyster larvae of known phenotypes. We found that upregulation of the NKA gene is detected primarily in larvae with a developed first shell (prodissoconch I), and was not pronounced in underdeveloped or deformed larvae, suggesting its expression reflects active shell formation under OA conditions, rather than a generalized stress response. Further, NKA mRNA was primarily localized along the dorsal shell hinge, the site of CaCO3 deposition, substantiating its role in early shell development. This study provides a methodological framework for phenotype-anchored sampling to investigate the expressional signatures underpinning successful shell development in OA conditions.
Continue reading ‘Single-larva transcriptomics resolve phenotype-anchored Na+ K+ ATPase expression during first shell formation in Pacific oyster larvae under ocean acidification conditions’Involvement of CgPGC-1α in regulating mitochondrial biogenesis in Pacific oyster Crassostrea gigas under ocean acidification
Published 5 October 2026 Science ClosedTags: adaptation, biological response, fisheries, laboratory, molecular biology, mollusks, multiple factors, otherprocess, physiology, temperature
Highlights
- CgPGC-1α with classical RRM domain was identified from Crassostrea gigas.
- CgPGC-1α mRNA was ubiquitously expressed with the highest level in gill.
- CgPGC-1α could respond to acidification treatment, promote mitochondrial biogenesis.
- Acidification enhanced mitochondrial biogenesis and ATP via AMPKα/PGC-1α.
Abstract
Ocean acidification poses a significant threat to calcifying marine organisms. The Pacific oyster Crassostrea gigas is an economically and ecologically important bivalve species. Understanding the molecular mechanisms underlying its physiological adaptation to acidification stress is therefore of great ecological and aquaculture relevance. Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is a central regulator of mitochondrial biogenesis and cellular energy metabolism, which plays important roles in response to various stressors. In this study, a PGC-1α homolog was identified from Crassostrea gigas (CgPGC-1α), which harbors an evolutionarily conserved RRM domain. The phylogenetic tree indicated that CgPGC-1α first clustered with PGC-1α from molluscs, then grouped with vertebrate PGC-1α, and finally joined with the PGC-1α of arthropods. During larval development, expression level of CgPGC-1α increased from the early embryonic stages, reached its highest level at blastula stage, and subsequently decreased during later development stages. In adult oysters, expression level of CgPGC-1α were detected in haemocytes and all examined tissues, with the highest level in gills. When the oysters were exposed to acidified seawater at pH 7.4, the expression level of CgPGC-1α in gonad was significantly upregulated at 7 and 21 days. Furthermore, at 7 days after acidification treatment, the mtDNA copy number, the expression level of CgMFN mRNA transcripts, the CgPGC-1α protein levels and the pAMPKα (Thr172) phosphorylation levels all significantly increased (p < 0.05), while the relative mRNA expression level of CgDRP1 significantly decreased (p < 0.05). Moreover, a significant increase in the number of mitochondria with morphology changing from elliptical to irregular and cristae becoming swollen was observed, and the ATP content was significantly elevated. After 28d days of acidification, mtDNA copy number and the expression level of CgMFN and CgNRF2 were significantly decreased, whereas the expression level of CgDRP1 was significantly increased. Collectively, these findings reveal a temporal response to acidification, characterized by an early compensatory activation of the AMPKα/PGC-1α axis and enhanced mitochondrial biogenesis, followed by impaired mitochondrial homeostasis under prolonged acidification stress. This study provides new insights into the molecular mechanisms underlying oyster resilience to ocean acidification and highlights the potential importance of mitochondrial adaptation in coping with future environmental changes.
Continue reading ‘Involvement of CgPGC-1α in regulating mitochondrial biogenesis in Pacific oyster Crassostrea gigas under ocean acidification’Ocean acidification remodels the mantle phosphoproteome and weakens shell mechanical resilience in Mytilus edulis
Published 2 October 2026 Science ClosedTags: biological response, laboratory, molecular biology, mollusks, morphology, North Pacific, physiology
Highlights
- Ocean acidification causes pH- and time-dependent disruption of nacreous and prismatic microstructures.
- Shell compressive strength declines progressively with decreasing pH and exposure duration.
- Quantitative mantle phosphoproteomics identified 3720 phosphoproteins and 10,780 phosphosites.
- Differential phosphorylation is associated with signaling, vesicular trafficking, autophagy, and metabolic pathways.
- Molecular and shell-level responses support a proof-of-concept dual-indicator framework.
Abstract
Ocean acidification (OA), driven by rising atmospheric CO2, threatens the structural integrity and ecological performance of calcifying marine organisms, yet the mechanistic links between environmental acidification and compromised shell mechanical resilience remain insufficiently understood. Here, we integrate microstructural imaging, mechanical testing, and quantitative phosphoproteomics to characterize the structural, mechanical, and phosphorylation responses of Mytilus edulis to OA and examine their relationships. Adult mussels were exposed to near-future pH conditions (8.1, 7.9, 7.7) for up to 40 days. OA produced progressive disorganization of nacreous tablets and prismatic columns without altering aragonite–calcite polymorphs, indicating that acidification drives structural degradation rather than mineralogical shifts. Correspondingly, shell compressive strength declined in a pH- and time-dependent manner, with an approximately 60% reduction at pH 7.7 after 40 days. Phosphoproteomic profiling identified 3720 phosphoproteins (10,780 sites), revealing extensive acidification-induced remodeling of phosphorylation networks. Proteins corresponding to differentially phosphorylated peptides were predominantly nuclear and were enriched in kinase-, PH-, PDZ-, and RNA-recognition-domain-containing proteins. Functional analyses implicated MAPK signaling, vesicular trafficking, ion transport, glycolysis/gluconeogenesis, autophagy, and calcium-associated processes. Phosphoproteomic remodeling was associated with the deterioration of shell microstructure and compressive strength, supporting an association between mantle phosphorylation responses and compromised biomineralization under acidification. The enriched pathways and protein domains were functionally related to calcium-dependent signaling, vesicular trafficking, cytoskeletal organization, and cellular metabolism, providing testable candidates for future mechanistic validation. Together, these findings support a working model in which ocean acidification is accompanied by coordinated phosphorylation remodeling and progressive loss of shell mechanical resilience. We further propose a proof-of-concept dual-indicator framework that integrates candidate molecular sentinels with organismal metrics, providing a conceptual basis for future assessment of aquaculture resilience and ecosystem vulnerability under progressive ocean acidification.
Graphical abstract
Microfocus X-ray computed tomography to evaluate ostracode shell density and other metrics for monitoring ocean acidification in the Arctic Ocean
Published 1 October 2026 Science ClosedTags: Arctic, biological response, crustaceans, morphology
Ocean acidification (OA) poses a significant threat to the ability of marine calcifying organisms—such as mollusks, corals, crustaceans, and plankton—to form and maintain their calcium carbonate-based shells. While some species show greater sensitivity to OA than others, the impacts on benthic marine calcifiers remain inadequately understood. This study investigates the shell density, weight, and thickness of the ostracode species Paracyprideis pseudopunctillata (subphylum Crustacea), which inhabits the continental shelves of the Arctic Ocean. Using microfocus X-ray computed tomography (microXCT) scans, we generated detailed morphometric measurements of specimens collected from both surface and down-core sediment samples to assess variations in shell properties over time. To our knowledge, this is the first study to examine the natural variability of ostracode shell characteristics in a specific region over an extended time period. For each specimen, we calculated a CT number, an index of relative calcium carbonate density, using a previously published equation. Our findings show that most living specimens of P. pseudopunctillata in the Beaufort Sea showed no overt signs of OA-related shell compromise or degradation. Shell density remained consistent between 1969 and 2018 CE, with consistent CT numbers suggesting that corrosive bottom waters are not a persistent feature in this area of the Beaufort Sea continental shelf. This is supported by a timeseries of discrete pH and carbonate saturation measurements. To help quantify diagenetic impacts on ostracode shells, we compared this calibration dataset with measurements of well-preserved adult specimens from downcore intervals of a box core (MR22, MT1, 1-29 cm) and a multicore (HLY1302 MC29, 25-35 cm), both collected from the same location, representing 2018 to 1955 CE and 1953 to 1925 CE, respectively. The CT numbers from these specimens were also consistent, which confirmed the preservation state of most specimens. However, several specimens had low CT numbers, and these shells show surficial evidence of post-mortem diagenesis. We aimed to quantify the extent of diagenesis, which has important implications for paleoenvironmental reconstructions. These findings provide important baseline data for understanding the variability of modern ostracode shell density of fossil and alive-collected specimens.
Continue reading ‘Microfocus X-ray computed tomography to evaluate ostracode shell density and other metrics for monitoring ocean acidification in the Arctic Ocean’Survival costs flavor: microplastics reprogram metabolic resource allocation and compromise oyster quality under ocean acidification
Published 30 September 2026 Science ClosedTags: biological response, fisheries, laboratory, molecular biology, mollusks, multiple factors, North Pacific, physiology, plastics
Ocean acidification (OA) and microplastic (MP) pollution are widespread marine stressors, yet their interactive effects on seafood quality and molecular metabolism remain unclear. This study investigated the combined effects of OA (pH 7.7) and MPs (2 and 200 μg/L) on the Pacific oyster (Magallana gigas). OA was the primary driver of textural deterioration, significantly reducing springiness and chewiness, while combined stress synergistically depleted protein and lipid reserves. Distinct lipid remodeling strategies were identified: OA induced DHA accumulation potentially associated with membrane stabilization, whereas MPs triggered EPA and ARA upregulation associated with stress and immune responses. The flavor profile was severely compromised, characterized by depletion of umami amino acids, nucleotide redistribution, and altered succinate contribution. Transcriptomic analysis revealed that high MP exposure activated genome maintenance and DNA repair-associated pathways, including the Fanconi anemia pathway, superimposed on OA-associated metabolic suppression. Concurrent upregulation of nucleotide salvage (APRT, HPRT) and amino acid catabolic genes (GLS, GDH) suggests increased utilization of flavor metabolites for energetic demands. These findings support a bioenergetic trade-off in which oysters exposed to OA and MPs reallocate resources from nutritional and sensory quality toward cellular maintenance and stress adaptation, highlighting underrecognized consequences of climate change and plastic pollution for seafood quality.
The future of aquatic food systems: climate change adaptation and resilience strategies – a narrative review
Published 30 September 2026 Science ClosedTags: biological response, fish, fisheries, mitigation, multiple factors, oxygen, physiology, policy, review, socio-economy, temperature
Across the world’s oceans, lakes, and rivers, climate change is reshaping fisheries and aquaculture systems on which billions of people depend for food and millions rely for their livelihoods. This narrative review summarizes peer-reviewed and selected literature published between 2008 and 2026 on climate impacts, adaptation options, and critical knowledge gaps in marine and freshwater fisheries, with a particular focus on tropical and African inland fisheries. This review shows that warming, acidification, deoxygenation, and altered hydrology are disrupting fish physiology; shifting the distribution of marine species poleward by over 70 km per decade, at rates that vary greatly by taxon, depth, and area; and destroying critical habitats. Although this rapid poleward shift is well documented in open marine environments, it contrasts sharply with landlocked or fragmented freshwater systems, where horizontal migration is physically constrained, a contrast central to the concept of climate entrapment developed in this review. In scenarios characterized by high emissions, tropical fisheries may see a reduction of up to 40% in their maximum catch potential, a statistic relevant to specific tropical Exclusive Economic Zones based on bioclimate-envelope forecasts, which should not be interpreted as a global or universal result. This figure is a model-derived projection under a bioclimate-envelope framework rather than an observed trend, and the realized outcome will depend on future emission pathways. These biophysical changes compound already serious pressures, overfishing, habitat loss, and pollution, and the burden falls heaviest on those least responsible: small-scale fishers, women, and indigenous communities. We introduce the concept of climate entrapment to describe the distinct vulnerability of freshwater fisheries: trapped by fragmented habitats and hydrological barriers, fish stocks cannot migrate to more secure waters as conditions deteriorate. While there are promising adaptation strategies, major gaps remain in understanding what works, for whom, and under what conditions. We conclude with priority recommendations for research, policy, and practice.
Environmental impact on calcifying organisms: focus on the effects of river runoff and ocean acidification on health status and pollutant bioaccumulation
Published 29 September 2026 Science ClosedTags: biogeochemistry, biological response, chemistry, corals, field, growth, Mediterranean, multiple factors, physiology, temperature, toxicants, vents
This doctoral thesis presents a multi-scale and interdisciplinary investigation into the impacts of climate change and anthropogenic pressures on coastal marine ecosystems, integrating the regional dynamics of the Adriatic Sea and the broader context of the Mediterranean Sea. This research combines long-term environmental data analysis with physiological and biochemical studies on key indicator species to elucidate the complex, and often synergistic, nature of the major threats facing these vulnerable environments. The first part of the work highlights a shift in the Adriatic Sea’s physical and biogeochemical regime, from historical eutrophication toward contemporary oligotrophic conditions. The combined effects of reduced Po River runoff and climate-driven warming, particularly during summer, modify the hydrography of the entire basin. These changes have cascading effects, clearly visible in the clam Chamelea gallina. Northern populations, while showing short-term resilience (e.g., higher survival in air), exhibit a lower condition index and higher bioaccumulation of trace metals, which activate costly metabolic defense mechanisms. This energetic stress makes the populations more vulnerable to additional pressures, possibly aligning with the recurrent mass mortality events. The second part of this work was conducted at the Panarea CO2 vents, which constitute a natural laboratory for assessing future global change impacts. Through the study of the coral Balanophyllia europaea, it is found that ocean acidification (OA), especially when combined with ocean warming, significantly impairs coral tissue regeneration, with species-specific responses. A crucial finding was that OA appears to stimulate a response mediated by the coral’s microbiome, enhancing its bacterial degradation capacity and reducing the presence of PAHs in coral tissues. Collectively, this work demonstrates that synergistic stressor interactions pose the greatest threat to marine ecosystems. While evidence of resilience emerges through physiological and microbial adaptations, the findings emphasize the urgent need for integrated management strategies that address cumulative impacts across scales.
Continue reading ‘Environmental impact on calcifying organisms: focus on the effects of river runoff and ocean acidification on health status and pollutant bioaccumulation’A key seawater acidification-enriched gut bacterium, Pseudoalteromonas carrageenovora P1, enhances growth performance, antioxidant status, and disease resistance in sea cucumbers under seawater acidification
Published 28 September 2026 Science ClosedTags: abundance, adaptation, biological response, BRcommunity, echinoderms, fisheries, laboratory, molecular biology, morphology, North Pacific, otherprocess, physiology, prokaryotes
Highlights
- First discovery of Pseudoalteromonas enrichment in A. japonicus gut under acidification.
- The dominant strain P. carrageenovora P1 was successfully isolated.
- P. carrageenovora P1 activates host antioxidant and immune pathways to bolster stress resilience.
- P. carrageenovora P1 significantly enhances resistance to V. splendidus 21,915 infection in A. japonicus.
Abstract
The sea cucumber (Apostichopus japonicus) is a key mariculture species of high economic value in East Asia. However, Ocean acidification, resulting from the increased uptake of anthropogenic CO₂ by seawater, severely impairs its growth, survival, and reproductive performance, thereby threatening the sustainable development of this aquaculture industry. The gut microbiota play a critical role in host adaptation to environmental stress; however, their involvement in mediating A. japonicus responses to seawater acidification remains unclear. Therefore, this study first compared the gut microbial communities of juvenile and adult A. japonicus under acidified and ambient seawater conditions. The results showed that Pseudoalteromonas abundance was significantly enriched under seawater acidification, from which the dominant strain, Pseudoalteromonas carrageenovora P1, was screened and isolated. This strain, when supplied as a dietary supplement under seawater acidification, improved A. japonicus growth performance and intestinal morphology, activated the Keap1-Nrf2-ARE and NF-κB pathways, enhanced antioxidant capacity and immune function, and increased resistance against Vibrio splendidus 21915 infection. Moreover, P. carrageenovora P1 modulated gut microbial structure by promoting beneficial bacteria such as Lutibacter while suppressing potential pathogens, including Vibrio, thereby maintaining intestinal homeostasis under acidification stress. This study reveals the important value of the gut microbiota of A. japonicus in regulating environmental tolerance of benthic invertebrates, and also provides a scientific reference for stress resistance regulation and health maintenance in A. japonicus aquaculture under seawater acidification.
Thermal history and behavioural plasticity shape reef fish tolerance to marine heatwaves
Published 25 September 2026 Science ClosedTags: adaptation, biological response, field, fish, laboratory, morphology, multiple factors, North Pacific, performance, physiology, temperature
Marine heatwaves are becoming more frequent and intense, driving mass fish mortalities and reshaping marine ecosystems, yet the capacity of fishes to tolerate heatwaves remains unclear. We quantified physiological condition and behavioural responses of juvenile warm-water (Abudefduf vaigiensis) and cool-water (Microcanthus strigatus) fishes from three natural climate analogues—an ambient temperate reef, an ocean warming analogue, and a combined warming and extreme acidification analogue—before and during the 2023 global marine heatwave, and under a + 3 °C simulated heatwave in the laboratory. In the laboratory, warm-water fish from the warm reef began the experiment in leaner condition than cool reef fish but increased their bite rates under heatwave conditions, compensating for elevated metabolic demand and maintaining body condition. Cool-water fish showed no behavioural adjustment to the heatwave, and body condition diverged by reef origin: cool reef fish lost weight across all treatments while warm- and extreme-origin fish maintained condition, suggesting tolerance was conferred by prior thermal history rather than acute behavioural responses. In the field, warm-water fish were leaner and had lower protein content during the 2023 heatwave than before it, while cool-water fish from the extreme reef had lower body condition than those from the cool reef prior to the heatwave. Our findings suggest that behavioural plasticity can facilitate warm-water fish tolerance to heatwaves at their cold leading edges, while thermal history supports heatwave tolerance in cool-water fish within their core ranges. Populations inhabiting naturally extreme climate analogues may therefore harbour pre-adapted, climate-resilient fish in a future ocean.
Continue reading ‘Thermal history and behavioural plasticity shape reef fish tolerance to marine heatwaves’Substrate stability drives zoobenthic recruitment in sessile polychaetes in interstitial marine habitats
Published 25 September 2026 Science ClosedTags: annelids, biological response, BRcommunity, field, Mediterranean, multiple factors, reproduction, substrate
Early life stages play a key role in structuring marine benthic communities, yet the mechanisms controlling recruitment in confined habitats remain poorly understood. In particular, the relative importance of substrate stability and visual cues under low-exchange, low-light conditions is unresolved. We investigated zoobenthic recruitment on 8 natural rock types differing in mineral composition, grain size, and surface reflectance, in simulated interstitial sub-boulder conditions in the Ligurian Sea (NW Mediterranean). After 90 d immersion, recruitment was dominated by spirorbid and serpulid polychaetes. Settlement intensity differed markedly among lithotypes, decreasing from granitoids (239.4 ± 37.7 spirorbids and 23.9 ± 3.4 serpulids) to marbles (128.7 ± 45.5 and 13.6 ± 4.8, respectively) and highly porous travertines (55.4 ± 18.5 and 8.4 ± 2.8), in agreement with their estimated dissolution rates. These results suggest that substrate stability is a primary driver of recruitment under confined conditions, likely mediated by localized acidification and enhanced dissolution of calcareous substrates. Within lithotypes, differences in recruitment were also associated with surface reflectance: specifically, a clear preference for darker surfaces emerged within marbles, whereas the colour effect was overridden by structural or mineralogical traits within the heterogeneous matrix of granitoids. These findings indicate that both chemical stability and optical properties contribute to recruitment patterns, although their relative importance varies with environmental context. The modulation of the early colonization in these restricted sub-boulder environments provide a valuable hypothetical framework to investigate the effects of large-scale environmental stressors like future ocean acidification scenario.
Continue reading ‘Substrate stability drives zoobenthic recruitment in sessile polychaetes in interstitial marine habitats’Projecting the impact of climate change on the lipid profile of the hydrocoral Millepora alcicornis: relative lipid homeostasis under warming and ocean acidification
Published 25 September 2026 Science ClosedTags: biological response, corals, laboratory, multiple factors, North Atlantic, physiology, temperature
Climate change exerts a strong impact on marine ecosystems, particularly through ocean acidification and rising water temperatures. Within this context, shifts in lipid composition have emerged as valuable stress indicators in many organisms, providing insights into the trophic ecology of ecosystems. The objective of this study was to assess the combined effects of warming and ocean acidification scenarios projected for the end of the century (+5 °C and pH 7.5) on the lipid profiles of the hydrocoral Millepora alcicornis, recently recorded for the first time in Tenerife (Canary Islands, Spain). After an 84-day experiment, corals exhibited significant reductions in total lipid content, key lipid classes and fatty acids, particularly triacylglycerides (TAG) and docosahexaenoic acid (DHA, 22:6n-3), whereas sterol esters (ST) and saturated fatty acids (SFAs) showed the opposite trend. By contrast, symbiont-derived glycolipids and C18 fatty acids characteristic of zooxanthellae were not significantly affected by environmental stress, suggesting relative stability of membrane lipid composition. Overall, the maintenance of membrane lipid composition in symbiotic algae together with evidence of lipid remodelling in the host suggests a capacity for short-term physiological acclimation of M. alcicornis under the simulated climate change conditions. However, reduced DHA availability may have important physiological implications for the colonies, justifying future studies on the molecular regulation of LC-PUFA biosynthesis and the long-term acclimation capacity of Millepora alcicornis under climate change.
Continue reading ‘Projecting the impact of climate change on the lipid profile of the hydrocoral Millepora alcicornis: relative lipid homeostasis under warming and ocean acidification’The effects of ocean warming and acidification on fatty acid contents of marine organisms: a global meta-analysis
Published 23 September 2026 Science ClosedTags: algae, biological response, fish, multiple factors, physiology, phytoplankton, review, temperature
Ocean warming and acidification pose significant threats to marine biodiversity and human nutrition by fundamentally altering the biochemical composition of marine organisms. A primary concern is the potential decline in omega-3 fatty acids (FAs) that are essential to human health and primarily obtained through seafood consumption. The influence of these climate stressors on FA content across marine food webs remains poorly understood. To address this critical knowledge gap, we conducted a global meta-analysis of 489 experiments across 143 publications and 132 marine species, quantifying the effects of warming and acidification on nutritionally important FAs in marine primary producers, invertebrates and fishes. Under warmer conditions, we detected reductions of up to 34% and 50% in omega-3 FA proportions and concentrations, respectively, and up to 53% in omega-3: omega-6 ratios, together with increases of up to 22% and 17% in saturated FA proportions and concentrations, respectively across taxa groups. Critically, these effects were intensified as warming increased. The most severe reductions in omega-3 FAs were observed in primary producers, suggesting that climate-driven changes at the base of the food web could impair trophic transfer of these micronutrients, limiting nutrient availability for higher trophic levels and ultimately humans. Ocean acidification, conversely, demonstrated a minor overall effect on FA levels, although this result was based on substantially fewer studies. Furthermore, we identified species from environments with broader temperature ranges, diatoms, herbivorous invertebrates and low-resilience fish to display larger reductions in omega-3 FA proportions under warming. Our meta-analysis further highlighted the need for long-term studies under ecologically realistic conditions to improve predictions of nutritional responses to climate change. These findings are essential for understanding how the nutritional value of species change under climate change, and can inform fisheries management, aquaculture and public health policy aimed at securing the future availability of these vital micronutrients.
Continue reading ‘The effects of ocean warming and acidification on fatty acid contents of marine organisms: a global meta-analysis’Novel approaches for bridging chemical and biological time series observations to reveal underlying impacts of ocean acidification on marine organisms and ecosystems
Published 23 September 2026 Science ClosedTags: biological response, chemistry, methods
There is increasing demand to compare long-term biological observations with derived or measured carbonate chemistry data to characterize the biological consequences of ocean acidification (OA) in natural environments. Meeting this need calls for a standardized methodology by which to quantify and directly compare biological and carbonate chemistry change. Widdicombe et al. (2023) proposed a conceptual framework based on biological traits and paired biological-chemical rate comparisons, but its practical implementation has remained unresolved.
Here we operationalize that conceptual framework through a standardized analytical workflow that integrates heterogeneous biological observations with established OA time-series methodology. The workflow addresses five analytical challenges that hinder comparison of long-term biological and OA records: 1) fundamentally different temporal structures of biological and OA time series, 2) heterogeneity of biological observations, 3) sparse and irregular biological sampling, 4) nonlinear biological trajectories, and 5) appearance–disappearance events that invalidate conventional relative change metrics. The workflow addresses these challenges through standardized biological grouping, annual aggregation, piecewise linear segmentation, normalization by ecological boundaries, and direct pairing of biological and chemical rates of change.
We evaluated workflow performance using 36 synthetic biological time series generated by applying predefined temperature-pH-driven biological performance functions to a 108-year hydrodynamic-biogeochemical model simulation under the SSP3-7.0 emissions scenario. Biological rates estimated by the workflow closely agreed with the corresponding reference rates. Rate estimates remained similar across the two annual representations, and their relative ordering was largely preserved across contrasting site-specific temperature-pH transitions. These results demonstrate the robustness of the workflow under the tested patterns of abiotic forcing.
The analytical workflow developed here operationalizes the conceptual approach of Widdicombe et al. (2023) by standardizing the estimation and comparison of rates of change in biological and carbonate chemistry time series. It supports comparisons among compatible biological indicators while retaining the ecological context of each time series. The workflow does not establish causality; instead, it assesses the temporal coherence between long-term changes in candidate biological indicators of OA and concurrent changes in carbonate chemistry. It therefore provides a practical foundation for regional and global syntheses of biological responses to OA and other long-term abiotic stressors.
Continue reading ‘Novel approaches for bridging chemical and biological time series observations to reveal underlying impacts of ocean acidification on marine organisms and ecosystems’Ocean acidification drives grazer niche convergence and trophic homogenization in benthic communities
Published 22 September 2026 Science ClosedTags: algae, annelids, biological response, BRcommunity, community composition, crustaceans, echinoderms, field, North Atlantic, otherprocess, performance, porifera, vents
Highlights
- Acidification compresses benthic community isotopic space via carbon homogenization.
- Functional groups show differential isotopic responses consistent with bottom-up trophic reorganization.
- Arbacia lixula shifts from a sponge-dominated diet to herbivory under low pH.
- Paracentrotus lividus maintains stable trophic niche despite acidification.
- Asymmetric grazer responses drive site-specific increases in isotopic niche overlap under acidification.
Abstract
Ocean acidification is expected to alter marine food webs, yet community-level evidence from long-term, naturally acidified systems remains limited. We used stable isotope ratios (δ13C and δ15N) to investigate how natural acidification restructures benthic trophic interactions, from basal resources to consumer niche dynamics, a naturally acidified system (pH gradient: 8.1 to ~7.4; pHT scale) spanning present-day to end-of-century projected conditions (SSP2–4.5 to SSP5–8.5). After accounting for local differences in the isotopic baseline, we found that: (1) community isotopic space contracted under acidification, with the carbon range decreasing as primary producers converged toward 13C-depleted values, while the nitrogen range expanded, indicating species-specific trophic adjustments; (2) functional groups responded asymmetrically, with primary producers showing the strongest δ13C shifts, filter-feeders remaining relatively stable, and omnivorous consumers showing reduced δ13C and δ15N values; (3) the two dominant sea urchin grazers responded in opposite directions — the macrophyte-based omnivore Paracentrotus lividus maintained stable isotopic values across the pH gradient, whereas the invertebrate-based omnivore Arbacia lixula exhibited pronounced isotopic shifts — resulting in markedly increased, though site-dependent, niche overlap at the most acidified sites (up to 27%); (4) Bayesian mixing models revealed that this convergence was driven by dietary shifts in A. lixula, which transitioned from a predominantly invertebrate-based diet (70–79% animal prey) toward algal-based feeding under acidification (19–24% animal prey), while P. lividus maintained relatively consistent dietary composition (50–70% algae). Together, these results indicate that acidification-driven homogenization of primary producers, combined with asymmetric consumer responses, compresses trophic niche space, with broad implications for the resilience and functioning of benthic ecosystems under future ocean change.
Graphical abstract
Along a natural CO2 gradient in the Canary Islands (pH 8.1–7.4, pHT scale; spanning present-day to end-of-century projected conditions, SSP2-4.5–SSP5-8.5), ocean acidification compresses community isotopic space through homogenization of primary producers. The two dominant sea urchin grazers respond asymmetrically: Paracentrotus lividus maintains a stable trophic niche, while Arbacia lixula shifts toward algal-based feeding, increasing niche overlap up to 27% at the most acidified sites.
Asymmetric metabolic responses of rockweed and herbivores reveal seasonal vulnerabilities to warming and acidification
Published 22 September 2026 Science ClosedTags: algae, biological response, BRcommunity, calcification, mollusks, multiple factors, photosynthesis, respiration, temperature
Macroalgal-herbivore interactions are fundamental to the stability of coastal ecosystems and their vulnerability to climate-driven shifts will affect biodiversity and ecosystem functioning. However, the effects of climate change on species interactions may be context dependent and vary by seasonal oceanographic processes. We examined the effects of warming and acidification on an intertidal primary producer foundation species, Silvetia compressa, and its herbivore, Agathistoma eiseni, under differing upwelling regimes in early (low upwelling) and late spring (high upwelling). We measured metabolic rates including photosynthesis, respiration, and calcification after four weeks of exposure to a range of nine pH levels (7.2–8.0) at two temperature levels (16°C, 20°C). Rockweed responded more to acidification than to warming, but showed different seasonal responses, decreasing photosynthetic rates in early spring and increasing rates during late spring. Their snail consumer, however, responded most strongly to temperature, increasing both respiration and calcification rates under warm conditions in late spring. Our findings demonstrate that seasonal differences can modulate responses of macroalgae and herbivores to changing environmental conditions. Warming may increase top-down effects through increased snail metabolism, while acidification affects rockweed production to affect bottom-up forcing. By assessing physiological responses across different ecological regimes, our study advances understanding of how top-down and bottom-up processes interact in intertidal ecosystems under global change.
Continue reading ‘Asymmetric metabolic responses of rockweed and herbivores reveal seasonal vulnerabilities to warming and acidification’Impact of ocean acidification on coastal copepod Pseudodiaptomus serricaudatus: implications for futuristic coastal dynamics
Published 21 September 2026 Science ClosedTags: biological response, crustaceans, Indian, laboratory, mortality, reproduction, zooplankton
Highlights
- Impact of ocean acidification on coastal copepods is proportional to its intensity.
- Projected low pH significantly increases Pseudodiaptomus serricaudatus mortality.
- Lower pH reduces overall population density and alters life-stage composition.
- Predicted acidification delays larval development in P. serricaudatus.
Abstract
Anthropogenic ocean acidification, driven by increased atmospheric CO2 absorption by seawater, poses significant threats to marine ecosystems, particularly in coastal environments, where pH reductions are expected to be more severe than in the open ocean. Copepods represent a critical link between primary producers and higher trophic levels in the classical marine food chain. However, their responses to the rapid decline in seawater pH expected by the century’s end remain poorly constrained—especially in dynamic coastal regions. The current study quantifies how near-future pH scenarios affect the survival and population dynamics of the Pseudodiaptomus serricaudatus, a perennial coastal and estuarine copepod of the West Coast of India. Adult copepods of this species were incubated at four target pH levels (8.10, 7.81, 7.51, 7.04) using an automated CO2-bubbling system to assess mortality and population dynamics. Mortality was evaluated every three days up to day 10; population stage composition was recorded on day 15. Mortality remained 23% at pH 8.1 (representing open-ocean conditions) but rose to 30% at pH 7.81 (present-day coastal average), 47% at pH 7.51 (projected late-21st-century coastal value), and 77% at pH 7.04 (extreme 23rd-century scenario). Population data revealed declines across life stages and copepodite-to-nauplius (Ct/N) ratio at lower pH values, indicating impaired development. Any potential impact of ocean acidification on copepods could affect the fisheries sector, as these copepods are the chief food source for mackerel, an economically important fish in the region. The critical pH threshold for P. serricaudatus appeared to lie between 7.51 and 7.81, corresponding closely to current coastal conditions and near-future projections. These findings suggest that coastal copepod populations may already be experiencing sublethal stress, with potential demographic collapse occurring within decades rather than by the end of the century.
Evaluating the combined effects of harmful algal blooms and low pH exposure on the development and hatching success of Artemia salina
Published 21 September 2026 Science ClosedTags: biological response, communityMF, crustaceans, laboratory, morphology, multiple factors, North Atlantic, reproduction, toxicants, zooplankton
Highlights
- Hatching success of Artemia salina was impaired by acidified conditions.
- Development of Artemia salina pre-nauplii was negatively impacted by both species of harmful algae and low pH exposure.
- Only toxin-producing harmful algal species produced significant morphological abnormalities of pre-naupliar Artemia salina.
- No synergistic effects of harmful algae and low pH exposure was seen in this study.
Abstract
Harmful algal blooms (HABs) and ocean acidification are major stressors in coastal marine ecosystems, yet their combined effects on early zooplankton development remain poorly understood. This study tested whether HABs and low pH exposure exert synergistic effects on the embryonic development and hatching success of brine shrimp (Artemia salina) cysts. Cysts were exposed to controls, toxin-producing HAB species (i.e. Margalefidinium polykrikoides or Alexandrium catenella), or a non-toxin producing HAB control (i.e. Gymnodinium aureolum) and at either ambient (pH ∼ 8) or acidified (pH ∼ 7.2) conditions. We hypothesized that the combined exposure to a toxin-producing HAB at acidified pH conditions would reduce hatching success and alter embryonic morphology. Low pH exposure consistently reduced hatching success and slowed developmental progression across treatments, reducing nauplii production. HAB exposure alone did not affect hatching success, but exposure to toxin-producing HABs in ambient pH conditions did significantly increase the morphological abnormalities at the membrane stage. Overall, no synergistic effects of HABs and low pH exposure were found for any response variable. Instead, HABs and low pH exposure exerted distinct, stage-specific impacts that were additive rather than interactive. These findings suggest that while exposure to toxin-producing HABs primarily disrupts morphology and low pH exposure slows development and reduces hatching success, their combined effects do not exceed additive expectations. Future work should explore physiological mechanisms underlying these stress responses and assess whether similar patterns occur in other cyst-producing zooplankton.
Pre-harvest thermal and pH stress modulate macronutrient digestibility and protein bioaccessibility of the sea cucumber Isostichopus badionotus under in vitro gastrointestinal digestion
Published 18 September 2026 Science ClosedTags: biological response, echinoderms, fisheries, laboratory, multiple factors, physiology
Highlights
- Thermal stress modulates protein digestibility and bioaccessibility in I. badionotus.
- Induction at 28 °C maximized protein digestibility and intestinal bioaccessibility.
- Sublethal 34 °C for 12 h peaked digestibility; longer exposure caused decline.
- Intestinal bioaccessibility was the most sensitive indicator to pre-harvest stress.
- Pre-harvest thermal and pH stress can alter the macronutrient nutritional quality in I. badionotus.
Abstract
The impact of in vivo thermal and pH stress on the macronutrient nutritional quality of the sea cucumber Isostichopus badionotus remains poorly understood from a food-nutrition perspective. This study investigated how acute induction temperatures (16–36 °C) and sublethal thermal exposure (34 °C, 3–48 h), combined with two ambient pH levels (7 and 8), modulate in vitro protein, lipid and carbohydrate digestibility and protein bioaccessibility of the sea cucumber I. badionotus, a collagen-rich tropical food, using the standardized static INFOGEST gastrointestinal simulation. In the acute induction experiment, protein digestibility, total bioaccessibility and intestinal bioaccessibility were strongly affected by temperature, with a narrow optimum at 28 °C (digestibility ∼58–66%; intestinal bioaccessibility ∼64–68% at both pH levels). Lipid digestibility varied within a relatively narrow range across treatments, whereas carbohydrate digestibility showed a marked temperature × pH interaction, with higher values at 28 and 36 °C under alkaline conditions. In the sublethal-stress experiment, protein digestibility and bioaccessibility followed a time-dependent pattern, with a peak at 12 h followed by a decline at 24–48 h, consistent with patterns of progressive collagen oxidation reported in other holothuroids. Across both experiments, intestinal bioaccessibility was the most responsive nutritional indicator to pre-harvest stress. These results demonstrate that pre-harvest thermal and pH stress can qualitatively alter the macronutrient nutritional quality of I. badionotus, with implications for harvest timing, processing optimization and seafood quality management under ongoing ocean warming and acidification.
Graphical abstract
Live sea cucumbers (Isostichopus badionotus) were exposed in vivo to controlled thermal and pH stress (16–36 °C, pH 7–8; 6 h acute induction and 3–48 h sublethal exposure), inducing proteolysis, oxidative responses, heat-shock protein expression and structural remodeling of the collagen-rich body-wall matrix. Samples were then subjected to standardized INFOGEST in vitro digestion (oral, gastric and intestinal phases with pepsin, pancreatin and bile salts), followed by dialysis at 12–14 kDa to quantify intestinal bioaccessibility. A narrow optimum at 28 °C and a sublethal window around 12 h at 34 °C tended to maximize protein digestibility and intestinal bioaccessibility, whereas conditions outside this window were associated with increased oxidative crosslinking and reduced protein quality.
