A predicted consequence of ocean acidification is its negative effect on the pools of Particulate Inorganic Carbon (PIC) that are essential for ‘ballasting’ the sinking of organic carbon, potentially leading to decreased subsurface oxygen. To explore such possible feedbacks, we investigated the relationships between PIC, coccolithophores, carbonate chemistry, and dissolved oxygen in the Southeast Pacific open ocean oxygen minimum zone, which naturally exhibits extremely low dissolved oxygen, low pH, and high pCO2 levels. Measurements of PIC and coccolithophore counts during late-spring 2015 and mid-summer 2018 revealed that coccolithophores, particularly Gephyrocapsa (Emiliania) huxleyi, significantly contributed to PIC through the shedding of coccoliths in the upper waters. On average, about a half of the PIC was attributed to countable coccoliths, with significantly diminished quotas observed below the euphotic depth. Temperature, oxygen, and pH were identified as key variables influencing PIC variation. PIC quotas were similar to those reported in other upwelling zones. However, PIC:POC ratios were substantially lower than what has been reported both in other open ocean and coastal margin areas, an effect that was more pronounced within the vertically defined oxygen minimum zone core. This study contributes to understanding the role of coccolithophores in PIC pools and suggests that the presence of low O2/low pH subsurface waters does not inhibit coccolithophore PIC quotas but may decrease the role of PIC in ballasting the export of organic carbon.
Continue reading ‘Particulate inorganic carbon quotas by coccolithophores in low oxygen/low pH waters off the Southeast Pacific margin’Posts Tagged 'community composition'
Particulate inorganic carbon quotas by coccolithophores in low oxygen/low pH waters off the Southeast Pacific margin
Published 12 December 2024 Science ClosedTags: biogeochemistry, biological response, chemistry, community composition, field, otherprocess, phytoplankton, South Pacific
Ocean acidification and plankton
Published 10 December 2024 Science ClosedTags: biological response, community composition, otherprocess, performance, physiology, phytoplankton, review
Ocean acidification represents a significant and growing threat to some species of marine plankton, with wide-ranging implications for marine ecosystems and the services they provide. The alterations in plankton physiology, behavior, and community structure under acidified conditions exemplify the profound impact of anthropogenic CO₂ emissions on the ocean’s smallest, yet most essential inhabitants.
Continue reading ‘Ocean acidification and plankton’Sea-air CO2 exchanges, pCO2 drivers and phytoplankton communities in the southwestern South Atlantic Ocean during spring
Published 3 December 2024 Science ClosedTags: biological response, chemistry, community composition, field, otherprocess, phytoplankton, respiration, South Atlantic
Highlights
- The southwestern Brazilian margin behaved as a weak CO2 outgassing zone in austral spring of 2014.
- Haptophytes were conspicuous along the entire study area, while Trichodesmium was prominent at SBB and diatoms at SBS.
- CaCO3 production was observed at SBB, whereas seawater dilution dominated the changes of sea surface pCO2 at SBS.
- Nitrification by Trichodesmium likely allowed increased contribution of haptophytes seen at open ocean oligotrophic waters.
- Net respiration was the main biogeochemical process regulating sea-air CO2 exchanges in the study area.
Abstract
Hydrographic properties and carbon dioxide partial pressure (pCO2) were measured through underway survey of surface waters during spring 2014, mainly along the Surface Haline Front in the continental shelf-break domain in the southwestern South Atlantic Ocean margin. Additionally, discrete seawater surface samples were collected along the ship track to identify the phytoplankton community and measure seawater chemical properties. This study aims to identify the drivers of the marine CO2‑carbonate chemistry and the role played by the phytoplankton composition on changes in the surface marine carbonate properties and the sea-air CO2 exchanges in two biogeochemical provinces (i.e., South Brazil Bight – SBB, and Southern Brazilian Shelf – SBS) governed by the dynamics of the Brazil Current system in the South Atlantic Ocean. The water masses identified on the surface of the region were Tropical Water (mostly present at offshore regions), Subtropical Shelf Water (mostly present over the continental shelf and slope), and Plata Plume Water (present in the south coastal domain of the SBS). On average, the study area behaved as a weak net CO2 outgassing zone of 1.2 ± 2.3 mmol m−2 d−1 during the spring, despite some subregions behaving as CO2 ingassing zones. The CO2 uptake verified in the SBB was related with mesoscale activity bringing cold waters in the region while CO2 uptake in the continental shelf domain of SBS was associated with the presence of cooler and fresher Plata Plume Water. Changes in total alkalinity and dissolved inorganic carbon at surface were mainly governed by CaCO3 production in SBB and seawater dilution in SBS, although other processes may also have influenced on their spatial variability. The dominant phytoplankton groups were haptophytes (31 %), Trichodesmium (21 %), and picocyanobateria (28 %), corresponding to Synechococcus (17 %) and Prochlorococcus (11 %). The dominance of the diatom group was associated with a decrease in sea surface pCO2 (mainly at coastal zones at southern areas), although the sea-air CO2 exchanges were regulated by cooling process due the presence of Plata Plume Water in that region. Changes in surface pH were related to high concentration of Trichodesmium slicks at offshore zones with the highest microalgae concentration, leading to pH drops of up to 0.4. Trichodesmium slicks likely allowed the development of haptophytes in offshore oligotrophic waters due to its role on N2 fixation. An increase of ∼20 % in the dominance of haptophytes contribution was verified in that situation, which was likely in a post-bloom development stage, since an increased dissolved inorganic carbon content was observed, associated with a prevalence of net respiration processes.
Continue reading ‘Sea-air CO2 exchanges, pCO2 drivers and phytoplankton communities in the southwestern South Atlantic Ocean during spring’Seawater warming rather than acidification profoundly affects coastal geochemical cycling mediated by marine microbiome
Published 28 November 2024 Science ClosedTags: BRcommunity, community composition, laboratory, mesocosms, molecular biology, multiple factors, otherprocess, prokaryotes, sediment, temperature
Highlights
- The structure and function of coastal microbial communities are influenced by ocean warming and acidification.
- Elevated temperature more profoundly impacts microbial communities than does acidification.
- Warming promotes denitrification that may increase nitrogen loss.
- The nitrogen, sulfur cycles, and carbon-fixation pathways exhibit distinct variation patterns under warming.
Abstract
The most concerning consequences of climate change include ocean acidification and warming, which can affect microbial communities and thus the biogeochemical cycling they mediate. Therefore, it is urgent to study the impact of ocean acidification and warming on microbial communities. In the current study, metagenomics was utilized to reveal how the structure and function of marine microorganisms respond to ocean warming and acidification. In terms of community structure, Non-metric Multidimensional Scaling analysis visualized the similarity or difference between the control and the warming or acidification treatments, but the inter-group differences were not significant. In terms of gene functionality, warming treatments showed greater effects on microbial communities than acidification. After treatment with warming, the relative abundance of genes associated with denitrification increased, suggesting that ocean nitrogen loss can increase with increased temperature. Conversely, acidification treatments apparently inhibited denitrification. Warming treatment also greatly affected sulfur-related microorganisms, increasing the relative abundance of certain sulfate-reducing prokaryote, and enriched microbial carbon-fixation pathways. These results provide information on the response strategies of coastal microorganisms in the changing marine environments.
Continue reading ‘Seawater warming rather than acidification profoundly affects coastal geochemical cycling mediated by marine microbiome’Chemical interactions between kelp Macrocystis pyrifera and symbiotic bacteria under elevated CO2 condition
Published 26 November 2024 Science ClosedTags: algae, biological response, community composition, molecular biology, otherprocess, physiology, prokaryotes, protists, reproduction
Kelps are pivotal to temperate coastal ecosystems, providing essential habitat and nutrients for diverse marine life, and significantly enhancing local biodiversity. The impacts of elevated CO2 levels on kelps may induce far-reaching effects throughout the marine food web, with potential consequences for biodiversity and ecosystem functions. This study considers the kelp Macrocystis pyrifera and its symbiotic microorganisms as a holistic functional unit (holobiont) to examine their collective response to heightened CO2 levels. Over a 4 month cultivation from the fertilization of M. pyrifera gametes to the development of juvenile sporophytes, our findings reveal that elevated CO2 levels influence the structure of the M. pyrifera symbiotic microbiome, alter metabolic profiles, and reshape microbe-metabolite interactions using 16S rRNA amplicon sequencing and liquid chromatography coupled to mass spectrometry analysis. Notably, Dinoroseobacter, Sulfitobacter, Methylotenera, Hyphomonas, Milano-WF1B-44 and Methylophaga were selected as microbiome biomarkers, which showed significant increases in comparative abundance with elevated CO2 levels. Stress-response molecules including fatty-acid metabolites, oxylipins, and hormone-like compounds such as methyl jasmonate and prostaglandin F2a emerged as critical metabolomic indicators. We propose that elevated CO2 puts certain stress on the M. pyrifera holobiont, prompting the release of these stress-response molecules. Moreover, these molecules may aid the kelp’s adaptation by modulating the microbial community structure, particularly influencing potential pathogenic bacteria, to cope with environmental change. These results will enrich the baseline data related to the chemical interactions between the microbiota and M. pyrifera and provide clues for predicting the resilience of kelps to future climate change.
Continue reading ‘Chemical interactions between kelp Macrocystis pyrifera and symbiotic bacteria under elevated CO2 condition’Effects of ocean acidification on the interaction between calcifying oysters (Ostrea chilensis) and bioeroding sponges (Cliona sp.)
Published 18 November 2024 Science ClosedTags: biological response, BRcommunity, calcification, community composition, dissolution, laboratory, mollusks, otherprocess, porifera, respiration
Ocean acidification can negatively affect a broad range of physiological processes in marine shelled molluscs. Marine bioeroding organisms could, in contrast, benefit from ocean acidification due to reduced energetic costs of bioerosion. Ocean acidification could thus exacerbate negative effects (e.g. reduced growth) of ocean acidification and shell borers on oysters. The aim of this study was to assess the impact of ocean acidification on the oyster Ostrea chilensis, the boring sponge Cliona sp., and their host-parasite relationship. We exposed three sets of organisms 1) O. chilensis, 2) Cliona sp., and 3) O. chilensis infested with Cliona sp. to pHT 8.03, 7.83, and 7.63. Reduced pH had no significant effect on calcification, respiration and clearance rate of uninfested O. chilensis. Low pH significantly reduced calcification leading to net dissolution of oyster shells at pHT 7.63 in sponge infested oysters. Net dissolution was likely caused by increased bioerosion by Cliona sp. at pHT 7.63. Additionally, declining pH and sponge infestation had a significant negative antagonistic effect (less negative than predicted additively) on clearance rate. This interaction suggests that sponge infested oysters increase clearance rates to cope with higher energy demand of increased shell repair resulting from higher boring activity of Cliona sp. at low seawater pH. O. chilensis body condition was unaffected by sponge infestation, pH, and the interaction of the two. The reduction in calcification rate suggests sponge infestation and ocean acidification together would exacerbate direct (reduced growth) and indirect (e.g., increased predation) negative effects on oyster health and survival. Our results indicate that ocean acidification by the end of the century could have severe consequences for marine molluscs with boring organisms.
Continue reading ‘Effects of ocean acidification on the interaction between calcifying oysters (Ostrea chilensis) and bioeroding sponges (Cliona sp.)’Drivers of biological diversity and responses to global changes in marine invertebrates
Published 12 November 2024 Science ClosedTags: adaptation, biological response, BRcommunity, community composition, corals, echinoderms, Indian, laboratory, molecular biology, otherprocess, reproduction
Human activities, in particular global changes (e.g., ocean warming – OW and ocean acidification – OA) are projected to drive some marine species to extinction within the coming decades. Marine invertebrates are amongst the most vulnerable to these changes due to the increased energetic cost to maintain intracellular pH homeostasis. To mitigate extinction, organisms may migrate, acclimate or adapt genetically. While these mechanisms are increasingly documented, they are not fully understood. This knowledge is critical for assessment of extinction risks, an important index for effective conservation and management of marine biodiversity. This thesis aims to increase our understanding on the drivers of biological diversity and sensitivity of marine invertebrates to OW and OA. Specifically, I assess (1) the quality of inferences on adaptive evolution in recent publications on responses of marine invertebrates to OW or OA and summarize the current knowledge and identify the gaps (Paper I); (2) the drivers of genetic diversity, structure, connectivity among Acropora austera populations across Mozambique coral reefs (Paper II); (3) the sensitivity to low pH in larvae of the sea urchin, Tripneustes gratilla, from subtidal and intertidal seagrass meadows with contrasting pH variability at Inhaca Island, Mozambique (Paper III); (4) the role of natural fluctuation in pH on the response of larvae of the sea urchin Echinus esculentus to low pH (Paper IV). Field genome scans surveys, laboratory experiments and systematic literature review were used. My systematic literature review (Paper I) highlights that publication on adaptive responses of marine invertebrates to OW or OA used more frequently strong methods for inferences of genetic change, such as common garden experiments and molecular genetic analysis. Methods for weaker inferences, such as comparison to model prediction, were less frequently used. On the other hand, reciprocal transplants, the stronger method for inferring adaptive change was less used in comparison with weaker methods such as phenotypic and genotypic selection. I also showed different levels of genetic variability and connectivity between populations of corals along the Mozambique coast. These geographic differences in levels of genetic diversity and connectivity may be explained by oceanographic factors and mode of reproduction of the corals (Paper II). Larvae of the sea urchin T. gratilla from Inhaca Island had reduced fitness when exposed to low pH. Moreover, larvae from adults collected in an intertidal habitat were more sensitive to low pH as compared to larvae from adults collected in a subtidal population. This result reveals population specific responses to low pH and challenges current theories that predict higher tolerance in individuals living in habitats with higher pH range (Paper III). Under present day natural variability in pH, the extreme low pH does not appear to be the main driver of biological responses in larvae of the sea urchin E. esculentus and adaptation to such conditions might be associated with a cost of plasticity but not a cost of canalization (Paper IV). Overall, this thesis shows that oceanographic factors and natural variability in pH influence the levels of genetic diversity and biological sensitivity in populations of marine invertebrates. These parameters should be considered to better evaluate the ability of marine invertebrates to withstand environmental changes and to sustain the provision of ecological functions, and guide conservation strategies.
Continue reading ‘Drivers of biological diversity and responses to global changes in marine invertebrates’Experimental coral reef communities transform yet persist under mitigated future ocean warming and acidification
Published 31 October 2024 Science ClosedTags: biological response, BRcommunity, calcification, community composition, corals, laboratory, mesocosms, mitigation, molecular biology, mortality, multiple factors, otherprocess, temperature
Significance
Coral reefs are exceptional ecosystems and support hundreds of millions of people around the world, yet they are under severe threat due to ocean warming and acidification. Reefs are predicted to collapse over the next few decades under these climate change stressors, with grave consequences for society. Contrary to predictions of near total destruction, this study shows that with effective climate change mitigation, coral reefs will continue to change, but global reef collapse may still be avoidable.
Abstract
Coral reefs are among the most sensitive ecosystems affected by ocean warming and acidification, and are predicted to collapse over the next few decades. Reefs are predicted to shift from net accreting calcifier-dominated systems with exceptionally high biodiversity to net eroding algal-dominated systems with dramatically reduced biodiversity. Here, we present a two-year experimental study examining the responses of entire mesocosm coral reef communities to warming (+2 °C), acidification (−0.2 pH units), and combined future ocean (+2 °C, −0.2 pH) treatments. Contrary to modeled projections, we show that under future ocean conditions, these communities shift structure and composition yet persist as novel calcifying ecosystems with high biodiversity. Our results suggest that if climate change is limited to Paris Climate Agreement targets, coral reefs could persist in an altered state rather than collapse.
Continue reading ‘Experimental coral reef communities transform yet persist under mitigated future ocean warming and acidification’Chapter 5 – Impacts of ocean acidification on the immunity and host–microbe interactions in marine mollusks
Published 22 October 2024 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, mollusks, otherprocess, physiology, prokaryotes
Along with human activities, an overwhelming amount of carbon dioxide (CO2) has been released into the atmosphere and subsequently absorbed by the ocean through the air–sea interface, leading to a significant decrease in oceanic pH, known as global ocean acidification (OA). Over time, the continued pH decrease, together with a major change in the carbonate system, has created serious risks for a wide range of marine organisms and the ecosystem, and therefore the near-future OA scenario is increasingly and intensively emphasized. As the ecologically dominant species in various oceanic environments such as estuaries and the coral reef, marine mollusks are at great risk due to the altered innate immune response under the near-future OA condition. Furthermore, because infectious disease in marine mollusks is the result of the joint action of host and pathogenic microbes, the impacts of the OA on the host, microbes, and their interactions may also affect the immune response of marine mollusks. In addition, other environmental stressors, such as high temperature, hypoxia, and pollutants, may exert combined impacts of OA on the immunity of marine mollusks. Thus, this chapter focuses on the following fields: (1) the impacts of OA on the cellular and humoral immune response of marine mollusks; (2) the potential affecting mechanisms of OA on the immunity of marine mollusks; (3) the host–microbe interactions in marine mollusks under OA scenario; and (4) the combined effects of OA and other environmental stressors on the immunity of marine mollusks.
Continue reading ‘Chapter 5 – Impacts of ocean acidification on the immunity and host–microbe interactions in marine mollusks’Shifting seagrass-oyster interactions alter species response to ocean warming and acidification
Published 16 October 2024 Science ClosedTags: biological response, BRcommunity, community composition, mesocosms, mollusks, morphology, multiple factors, otherprocess, phanerogams, physiology, temperature
- A major challenge in biodiversity research is the incorporation of species interactions into frameworks describing population and community response to global edfnmental change (GEC). Mutualisms are a type of species interaction especially sensitive to changing environmental conditions, and the breakdown of facilitative species interactions could amplify the negative impacts of novel climate regimes on focal species.
- Here, we investigate how reciprocal interactions between two coastal foundation species, the eastern oyster (Crassostrea virginica) and eelgrass (Zostera marina) shift in sign and magnitude in response to ocean warming (+1.5°C) and acidification (−0.4 pH) via a manipulative co-culture experiment in mesocosms.
- Under ambient environmental conditions, oysters facilitated eelgrass leaf growth and clonal reproduction by 35% and 38%, respectively. Simultaneously, eelgrass decreased the oyster condition index (the ratio of tissue to shell biomass) by 35%, indicating greater allocation of energy to shell growth instead of soft tissues at ambient conditions. Varying sensitivities of each species to ocean warming and/or acidification treatments led to complex shifts in species interactions that were trait dependent. As such, community outcomes under future conditions were influenced by species interactions that amplified and mitigated species response to environmental change.
- Synthesis: Given that species interaction effect sizes were similar in magnitude to effect sizes of warming or pH treatments, our results underscore the need to identify key species and interaction types that strongly influence community response to GEC. Specifically, for macrophyte-bivalve interactions, understanding how physiological limitations on growth are impacted by environmental heterogeneity and co-culture will support the successful restoration of natural populations and the rapid expansion of aquaculture.
Species differences in carbon drawdown during marine phytoplankton growth
Published 9 October 2024 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, otherprocess, photosynthesis, phytoplankton
Highlights
- Species differences in carbon drawdown exist among marine phytoplankton species.
- Phytoplankton species which can utilize > 1000 μM DIC may thrive under OAE.
- Effects of OAE on phytoplankton communities depend on species differences in oceans.
Abstract
Ocean alkalinity enhancement (OAE) has been proposed as a mitigation method for negative carbon emission. Its effects on marine phytoplankton communities would depend on species differences in tolerance to high pH, which results from phytoplankton photosynthetic drawdown of dissolved inorganic carbon (DIC). In this study, 20 marine phytoplankton species were grown in sealed batch cultures and DIC, pH and chlorophyll a (Chl-a) were measured at the peaks of biomass. These results revealed a wide range of species differences. The drawdown DIC (ΔDIC) vs. increases in pH (ΔpH) graph resembled a Michaelis-Menten curve: significantly linear for ΔDIC < ~1000 μM and starting to plateau at ΔDIC > 1000 μM. This indicated that two mechanisms were operating: CO2 limitation at ΔpH < 1.41 and biologically-mediated precipitation-CO2 released carbon uptake at ΔpH > 1.41. These findings suggest that the potential effects of OAE on the phytoplankton communities would depend on the species differences in oceans.
Continue reading ‘Species differences in carbon drawdown during marine phytoplankton growth’Benthic diatom response to short-term acidification and warming influenced by grazing and nutrients
Published 7 October 2024 Science ClosedTags: biological response, BRcommunity, community composition, echinoderms, laboratory, mollusks, multiple factors, otherprocess, physiology, phytoplankton, temperature
Highlights
- Periphyton was not affected by acidification and warming as nutrients are replete.
- Direct effects of acidification and warming on grazers indirectly affected periphyton.
- Differences in fecal production of grazers affected rate of periphyton regeneration.
- Complex multiple factor interactions are important considerations for future studies.
Abstract
This study investigated differences in total biomass (ash-free dry weight) of the periphyton and autotrophic biomass (chlorophyll-a content) of benthic diatoms in the absence or presence (No Grazer vs With Grazer) of two invertebrate grazers (Stichopus cf. horrens and Trochus maculatus) under simulated ambient (PRESENT), independent ocean acidification (OA) and warming (OW), and their combination (FUTURE) over an eight-day period. In the absence of a grazer, there were no significant differences in the average of the total and autotrophic biomass among treatments for both experiments. Stichopus significantly reduced the total and autotrophic biomass after 1 day, except under OW. Trochus significantly reduced the total biomass in the OA and OW treatments after 5 days, and the autotrophic biomass in the OA treatment after 1 and 5 days of grazing. In treatments where total and autotrophic biomass were not reduced, nutrients from the fecal matter and metabolic wastes of grazers seemingly stimulated the regeneration of microalgal biomass. The amount of fecal matter produced also affected the rate of microalgal renewal. In addition, due to the unexpected difference in seawater nutrient concentration during the two experiments, comparison of primary production under PRESENT was done to tease out nutrient effects. In PRESENT, autotrophic biomass was higher in Experiment 1 than Experiment 2, which was likely influenced by differences in nutrient concentrations. Results of this study elucidate underlying mechanisms in microalgal interactions with biotic and abiotic factors in tropical systems under changing ocean conditions.
Continue reading ‘Benthic diatom response to short-term acidification and warming influenced by grazing and nutrients’Skeletal magnesium content in Antarctic echinoderms along a latitudinal gradient
Published 4 October 2024 Science ClosedTags: Antarctic, biological response, BRcommunity, calcification, community composition, echinoderms, laboratory, otherprocess, physiology, respiration
Highlights
- Skeletal structures presented high Mg content, except in echinoid spines.
- Asteroids had the highest Mg content, followed by ophiuroids, holothuroids, and echinoids.
- No local variability in skeletal Mg content was observed in asteroids and holothuroids.
- Environmental parameters may have influenced the skeletal Mg in ophiuroids and echinoids.
Abstract
Ocean warming and acidification driven by anthropogenic CO2 emissions may impact the mineral composition of marine calcifiers. Species with high skeletal Mg content could be more susceptible in polar regions due to the increased solubility of CO2 at lower temperatures. We aimed to assess the environmental influence on skeletal Mg content of Antarctic echinoderms belonging to Asteroidea, Ophiuroidea, Echinoidea and Holothuroidea classes, along a latitudinal gradient from the South Shetland Islands to Rothera (Adelaide Island). We found that all skeletal structures, except for echinoid spines, exhibited high Mg content, with asteroids showing the highest levels. Our results suggest that asteroids and holothuroids exert a higher biological capacity to regulate Mg incorporation into their skeletons. In contrast, the variability observed in the skeletal Mg content of ophiuroids and echinoids appears to be more influenced by local environmental conditions. Species-specific differences in how environmental factors affect the skeletal Mg content can thus be expected as a response to global climate change.
Continue reading ‘Skeletal magnesium content in Antarctic echinoderms along a latitudinal gradient’Key benthic species are affected by predicted warming in winter but show resistance to ocean acidification
Published 20 September 2024 Science ClosedTags: algae, biological response, BRcommunity, community composition, laboratory, mesocosms, mollusks, mortality, multiple factors, otherprocess, photosynthesis, physiology, temperature
The effects of climate change on coastal biodiversity are a major concern because altered community compositions may change associated rates of ecosystem functioning and services. Whilst responses of single species or taxa have been studied extensively, it remains challenging to estimate responses to climate change across different levels of biological organisation. Studies that consider the effects of moderate realistic near-future levels of ocean warming and acidification are needed to identify and quantify the gradual responses of species to change. Also, studies including different levels of biological complexity may reveal opportunities for amelioration or facilitation under changing environmental conditions. To test experimentally for independent and combined effects of predicted near-future warming and acidification on key benthic species, we manipulated three levels of temperature (winter ambient, +0.8 and +2°C) and two levels of pCO2 (ambient at 450 ppm and elevated at 645 ppm) and quantified their effects on mussels and algae growing separately and together (to also test for inter-specific interactions). Warming increased mussel clearance and mortality rates simultaneously, which meant that total biomass peaked at +0.8°C. Surprisingly, however, no effects of elevated pCO2 were identified on mussels or algae. Moreover, when kept together, mussels and algae had mutually positive effects on each other’s performance (i.e. mussel survival and condition index, mussel and algal biomass and proxies for algal productivity including relative maximum electron transport rate [rETRmax], saturating light intensity [Ik] and maximum quantum yield [Fv/Fm]), independent of warming and acidification. Our results show that even moderate warming affected the functioning of key benthic species, and we identified a level of resistance to predicted ocean acidification. Importantly, we show that the presence of a second functional group enhanced the functioning of both groups (mussels and algae), independent of changing environmental conditions, which highlights the ecological and potential economic benefits of conserving biodiversity in marine ecosystems.
Continue reading ‘Key benthic species are affected by predicted warming in winter but show resistance to ocean acidification’Nearshore microbial communities of the Pacific Northwest coasts of Canada and the U.S.
Published 6 September 2024 Science ClosedTags: biological response, chemistry, community composition, field, molecular biology, North Pacific, otherprocess, phytoplankton, prokaryotes
A survey of marine pelagic coastal microbial communities was conducted over a large geographic latitude range, from Cape Mendocino in northern California USA to Queen Charlotte Sound in British Columbia Canada, during the spring to summer transition. DNA metabarcoding and flow cytometry were used to characterize microbial communities. Physical and chemical oceanography indicated moderate conditions during the survey with no widespread upwelling, marine heat wave, or other extreme conditions. However, four locations displayed features approaching acidified conditions: Heceta Head, Newport, Copalis Beach, and Cape Flattery. Although bacterial and archaeal communities at the Juan de Fuca canyon and northward had high similarity, those south of the Juan de Fuca canyon were well differentiated from each other. In contrast, eukaryotic microbial communities exhibited stronger geographic differentiation than bacterial and archaeal communities across the extent of the survey. Seawater parameters that were best predictors of bacterial and archaeal community structure were temperature, pH, and dissolved inorganic nutrients (nitrate, phosphate, silicate), while those that were best predictors of eukaryotic microbial community structure were salinity, dissolved oxygen, total alkalinity, and dissolved inorganic nutrients (nitrite, silicate). Although five bacterial and archaeal indicators for potentially corrosive waters were identified (Colwellia, Nitrosopumilus, Nitrosopelagicus, Sup05 cluster, Sva0996 marine group), no eukaryotic microbial indicators were found. Potentially pathogenic taxa detected in the survey included four disease-causing bacteria for mammals, finfish, and/or shellfish (Coxiella, Flavobacterium, Francisella, Tenacibaculum), sixteen genera of microalgae capable of producing biotoxins, and fifteen parasitic species. This study demonstrates the value of coordinating microbial sampling and analysis with broad-scale oceanographic surveys to generate insights into community structures of these important pelagic trophic levels.
Continue reading ‘Nearshore microbial communities of the Pacific Northwest coasts of Canada and the U.S.’Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding
Published 2 August 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, North Atlantic, otherprocess, physiology, prokaryotes
Ocean acidification and warming threaten marine life, yet the impact of these processes on microbes remains unclear. Here, we performed basin-scale DNA metabarcoding of prokaryotes (16S V4–V5) and protists (18S V9) in the Gulf of Mexico and applied generalized linear models to reveal group-specific environmental correlates of functionally diverse microbes. Models supported prior physiological trends for some groups, like positive temperature effects on SAR11 and SAR86, and a positive effect of pH on Prochlorococcus that implied a negative response to decreasing pH. New insights were revealed for protists, like Syndiniales and Sagenista (e.g., positive pH effects), which offset positive relationships with temperature and reinforced the importance of considering multiple stressors simultaneously. Indicator analysis revealed phytoplankton, like Ostreococcus sp. and Emiliania huxleyi, that were associated with more acidic waters and may reflect candidate indicators of ocean change. Our findings highlight the need for sustained microbial sampling in marine systems, with implications for carbon export, nutrient cycling, and ecosystem health.
Continue reading ‘Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding’From nutrients to fish: impacts of mesoscale processes in a global CESM-FEISTY eddying ocean model framework
Published 26 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, fish, globalmodeling, modeling, otherprocess, phytoplankton, review, zooplankton
The ocean sustains ecosystems that are essential for human livelihood and habitability of the planet. The ocean holds an enormous amount of carbon, and serves as a critical source of nutrition for human societies worldwide. Climate variability and change impacts marine biogeochemistry and ecosystems. Thus, having state-of-the-art simulations of the ocean, which include marine biogeochemistry and ecosystems, is critical for understanding the role of climate variability and change on the ocean biosphere. Here we present a novel global eddy-resolving (0.1° horizontal resolution) simulation of the ocean and sea ice, including ocean biogeochemistry, performed with the Community Earth System Model (CESM). The simulation is forced by the atmospheric dataset based on the Japanese Reanalysis (JRA-55) product over the 1958 – 2021 period. We present a novel configuration of the CESM marine ecosystem model in this simulation which includes two zooplankton classes: microzooplankton and mesozooplankton. This novel planktonic food web structure facilitates “offline” coupling with the Fisheries Size and Functional Type (FEISTY) model. FEISTY is a size- and trait-based model of fish functional types contributing to fisheries. We present an evaluation of the ocean biogeochemistry, marine ecosystem (including fish types), and sea ice in this high-resolution simulation compared to available observations and a corresponding low resolution (nominal 1°) simulation. Our analysis offers insights into environmental controls on trophodynamics within the ocean. We find that this high resolution simulation provides a realistic reconstruction of nutrients, oxygen, sea ice, plankton and fish distributions over the global ocean. On global and large regional scales the high-resolution simulation is comparable to the standard 1° simulation, but on smaller scales, explicitly resolving the mesoscale dynamics is shown to be important for accurately capturing trophodynamic structuring, especially in coastal ecosystems. We show that fine scale ocean features leave imprints on ocean ecosystems, from plankton to fish, from the tropics to polar regions. This simulation also offers insights on ocean acidification over the past 64 years, as well as how large scale climate variations may impact upper trophic levels. The data generated by the simulations are publicly available and will be a fruitful community resource for a large variety of oceanographic science questions.
Continue reading ‘From nutrients to fish: impacts of mesoscale processes in a global CESM-FEISTY eddying ocean model framework’Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios
Published 24 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, morphology, otherprocess, physiology, prokaryotes, sediment, South Atlantic
Mangroves are coastal environments that provide resources for adjacent ecosystems due to their high productivity, organic matter decomposition, and carbon cycling by microbial communities in sediments. Since the industrial revolution, the increase of Greenhouse Gases (GHG) released due to fossil fuel burning led to many environmental abnormalities such as an increase in average temperature and ocean acidification. Based on the hypothesis that climate change modifies the microbial diversity associated with decaying organic matter in mangrove sediments, this study aimed to evaluate the microbial diversity under simulated climate change conditions during the litter decomposition process and the emission of GHG. Thus, microcosms containing organic matter from the three main plant species found in mangroves throughout the State of São Paulo, Brazil (Rhizophora mangle, Laguncularia racemosa, and Avicennia schaueriana) were incubated simulating climate changes (increase in temperature and pH). The decay rate was higher in the first seven days of incubation, but the differences between the simulated treatments were minor. GHG fluxes were higher in the first ten days and higher in samples under increased temperature. The variation in time resulted in substantial impacts on α-diversity and community composition, initially with a greater abundance of Gammaproteobacteria for all plant species despite the climate conditions variations. The PCoA analysis reveals the chronological sequence in β-diversity, indicating the increase of Deltaproteobacteria at the end of the process. The GHG emission varied in function of the organic matter source with an increase due to the elevated temperature, concurrent with the rise in the Deltaproteobacteria population. Thus, these results indicate that under the expected climate change scenario for the end of the century, the decomposition rate and GHG emissions will be potentially higher, leading to a harmful feedback loop of GHG production. This process can happen independently of an impact on the bacterial community structure due to these changes.
Continue reading ‘Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios’Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta
Published 23 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, mollusks, morphology, North Pacific, otherprocess, physiology, prokaryotes
The intestinal microflora of host, vital for nutrient absorption and immune regulation, can experience dysbiosis under environmental stress, thereby potentially enhancing host susceptibility to pathogenic invasion. The impact of ocean acidification on bivalves is substantial, yet its effects on the intestinal microflora remain poorly understood. This study employed high-throughput 16S rRNA sequencing technology to investigate the variations in the intestinal microflora of Sinonovacula constricta between the control group (CON) and the seawater acidification group (OA) at different time points.After exposure to OA, changes in the composition of the intestinal microflora of S. constricta were observed, with no significant difference in α-diversity between the acidified and control groups. At the phylum level, there was an increase in the abundance of Proteobacteria, while Cyanobacteria decreased in the OA14d and OA35d groups. Additionally, the relative abundance of Firmicutes increased in the OA7d and OA35d groups. At the genus level, the relative content of Pseudomonas was lower than that in the control group, while the relative content of Flavobacterium, Acinetobacter, and Enterobacter showed a gradual increasing trendin the OA14d and OA35d groups.. LEfSe analysis identified Serpens as discriminative biomarkers in the OA7d group, while Enterobacteriales, Rhodobacteraceae and Martvita were biomarker in the OA14d group, and Serpens, Acidibacteria and Aeromonadaceae were biomarker in the OA35d group. Functional prediction results indicated significant enrichment in metabolic pathways at different time points following ocean acidification stress… The pathways involved in biosynthesis in the OA14d group and in sucrose degradation in the OA35d group were significantly disrupted. These results suggest that OA stress can have adverse effects on the intestinal microflora of S. constricta, but it does not cause obvious damage to the digestive system. This study provides new insights into the intestinal microflora of marine bivalves under acidification stress.
Continue reading ‘Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta’Bottom’s up – focusing on habitat shifts as mediators of anthropogenic impacts on marine ecosystems
Published 16 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, corals, fish, otherprocess, South Pacific
Marine ecosystems face unprecedented challenges in the Anthropocene, an age characterized by escalating environmental stressors such as ocean acidification, warming and the intrusion of human infrastructure into coastal seascapes. As we hasten to understand the ecological consequences of these mounting pressures, much attention has been devoted to characterizing the traits of individual taxa that are likely to dictate their response to future conditions. However, we are increasingly recognizing the pivotal role that habitat may play in shaping the response of communities to such broad-scale changes. In this thesis, I present empirical evidence of the capacity of habitat-level responses to stress to propagate upwards through the broader ecosystem, inducing substantial and meaningful changes in supported fish assemblages. In my first project, I trace the indirect effects of ocean acidification from the habitat level through to the structure of an assemblage of small-bodied reef fish. I use the natural laboratory provided by a volcanic seep in Papua New Guinea to approximate future acidification conditions under current climate change projections. Here, coral communities chronically exposed to elevated CO2 exhibit a shift in competitive interactions that favours fast-growing, morphologically simple taxa, with the implication that other coral reefs globally may undergo an equivalent structural simplification in coming decades in response to ocean acidification. I show that several common, ecologically important reef fishes display strong and relatively inflexible associations with branching corals, with some even preferencing structure over living tissue when selecting habitat. I then demonstrate that acidified and structurally simplified reefs show a drastically reduced capacity to support healthy populations of these fishes. This chapter contributes two important findings: first, that simplification of coral morphology in response to ocean acidification can induce substantial negative changes in supported reef fish assemblages, even if the total cover of live coral remains unchanged; and secondly, that reef fish may be more vulnerable to these indirect, habitat level changes than to the simple direct effects wrought by acidification. Shifting focus to temperate ecosystems, my second project examines how warming, coastal urbanisation and marine protection interact to influence the distributions and assemblage structures of rangeshifting tropical fishes as they venture poleward in response to ocean warming. Using breakwalls as a ubiquitous and readily accessible test case, I reveal that the structural complexity and shelter from wave action offered by coastal infrastructure can render these environments hotspots for tropical fish recruitment. Importantly, this chapter both identifies coastal infrastructure as potentially significant contributors to the process of tropicalisation, highlighting the need for further research attention and monitoring, but also recognises that marine protected areas can offer an effective means of mitigating the effects of coastal urbanisation. Together, the two projects presented in this thesis demonstrate the power of both the direct and indirect effects of habitat changes. In light of the ongoing and accelerating accumulation of anthropogenically induced stressors, my research underscores the necessity of accounting for habitat-level responses when projecting future fish assemblages, and frames habitat protection as a vital element of safeguarding healthy ecosystems.
Continue reading ‘Bottom’s up – focusing on habitat shifts as mediators of anthropogenic impacts on marine ecosystems’
