Posts Tagged 'BRcommunity'



Phytoplankton blooms at increasing levels of atmospheric carbon dioxide: experimental evidence for negative effects on prymnesiophytes and positive on small picoeukaryotes

Anthropogenic emissions of carbon dioxide (CO2) and the ongoing accumulation in the surface ocean together with concomitantly decreasing pH and calcium carbonate saturation states have the potential to impact phytoplankton community composition and therefore biogeochemical element cycling on a global scale. Here we report on a recent mesocosm CO2 perturbation study (Raunefjorden, Norway), with a focus on organic matter and phytoplankton dynamics. Cell numbers of three phytoplankton groups were particularly affected by increasing levels of seawater CO2 throughout the entire experiment, with the cyanobacterium Synechococcus and picoeukaryotes (prasinophytes) profiting, and the coccolithophore Emiliania huxleyi (prymnesiophyte) being negatively impacted. Combining these results with other phytoplankton community CO2 experiments into a data-set of global coverage suggests that, whenever CO2 effects are found, prymnesiophyte (coccolithophore) abundances are negatively affected, while the opposite holds true for small picoeukaryotes belonging to the class of prasinophytes, or the division of chlorophytes in general. Future reductions in calcium carbonate-producing coccolithophores, providing ballast which accelerates the sinking of particulate organic matter, together with increases in picoeukaryotes, an important component of the microbial loop in the euphotic zone, have the potential to impact marine export production, with feedbacks to Earth’s climate system.

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Contrasting microbial community changes during mass extinctions at the Middle/Late Permian and Permian/Triassic boundaries

Microbial communities are known to expand as a result of environmental deterioration during mass extinctions, but differences in microbial community changes between extinction events and their underlying causes have received little study to date. Here, we present a systematic investigation of microbial lipid biomarkers spanning ∼20 Myr (Middle Permian to Early Triassic) at Shangsi, South China, to contrast microbial changes associated with the Guadalupian–Lopingian boundary (GLB) and Permian–Triassic boundary (PTB) mass extinctions. High-resolution analysis of the PTB crisis interval reveals a distinct succession of microbial communities based on secular variation in moretanes, 2-methylhopanes, aryl isoprenoids, steranes, n-alkyl cyclohexanes, and other biomarkers. The first episode of the PTB mass extinction (ME1) was associated with increases in red algae and nitrogen-fixing bacteria along with evidence for enhanced wildfires and elevated soil erosion, whereas the second episode was associated with expansions of green sulfur bacteria, nitrogen-fixing bacteria, and acritarchs coinciding with climatic hyperwarming, ocean stratification, and seawater acidification. This pattern of microbial community change suggests that marine environmental deterioration was greater during the second extinction episode (ME2). The GLB shows more limited changes in microbial community composition and more limited environmental deterioration than the PTB, consistent with differences in species-level extinction rates (∼71% vs. 90%, respectively). Microbial biomarker records have the potential to refine our understanding of the nature of these crises and to provide insights concerning possible outcomes of present-day anthropogenic stresses on Earth’s ecosystems.

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pCO2 effects on species composition and growth of an estuarine phytoplankton community

The effects of ongoing changes in ocean carbonate chemistry on plankton ecology have important implications for food webs and biogeochemical cycling. However, conflicting results have emerged regarding species-specific responses to pCO2 enrichment and thus community responses have been difficult to predict. To assess community level effects (e.g., production) of altered carbonate chemistry, studies are needed that capitalize on the benefits of controlled experiments but also retain features of intact ecosystems that may exacerbate or ameliorate the effects observed in single-species or single cohort experiments. We performed incubations of natural plankton communities from Narragansett Bay, RI, USA in winter at ambient bay temperatures (5–13 °C), light and nutrient concentrations under three levels of controlled and constant CO2 concentrations, simulating past, present and future conditions at mean pCO2 levels of 224, 361, and 724 μatm respectively. Samples for carbonate analysis, chlorophyll a, plankton size-abundance, and plankton species composition were collected daily and phytoplankton growth rates in three different size fractions (<5, 5–20, and >20 μm) were measured at the end of the 7-day incubation period. Community composition changed during the incubation period with major increases in relative diatom abundance, which were similar across pCO2 treatments. At the end of the experiment, 24-hr growth responses to pCO2 levels varied as a function of cell size. The smallest size fraction (<5 μm) grew faster at the elevated pCO2 level. In contrast, the 5–20 μm size fraction grew fastest in the Present treatment and there were no significant differences in growth rate among treatments in the >20 μm size fraction. Cell size distribution shifted toward smaller cells in both the Past and Future treatments but remained unchanged in the Present treatment. Similarity in Past and Future treatments for cell size distribution and growth rate (5–20 μm size fraction) illustrate non-monotonic effects of increasing pCO2 on ecological indicators and may be related to opposing physiological effects of high CO2 and low pH both within and among species. Interaction of these effects with other factors (e.g., nutrients, light, temperature, grazing, initial species composition) may explain variability among published studies. The absence of clear treatment-specific effects at the community level suggest that extrapolation of species-specific responses or experiments with only present day and future pCO2 treatments levels would produce misleading predictions of ocean acidification impacts on plankton production.

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Elevated pCO2 enhances bacterioplankton removal of organic carbon

Factors that affect the removal of organic carbon by heterotrophic bacterioplankton can impact the rate and magnitude of organic carbon loss in the ocean through the conversion of a portion of consumed organic carbon to CO2. Through enhanced rates of consumption, surface bacterioplankton communities can also reduce the amount of dissolved organic carbon (DOC) available for export from the surface ocean. The present study investigated the direct effects of elevated pCO2 on bacterioplankton removal of several forms of DOC ranging from glucose to complex phytoplankton exudate and lysate, and naturally occurring DOC. Elevated pCO2 (1000–1500 ppm) enhanced both the rate and magnitude of organic carbon removal by bacterioplankton communities compared to low (pre-industrial and ambient) pCO2 (250 –~400 ppm). The increased removal was largely due to enhanced respiration, rather than enhanced production of bacterioplankton biomass. The results suggest that elevated pCO2 can increase DOC consumption and decrease bacterioplankton growth efficiency, ultimately decreasing the amount of DOC available for vertical export and increasing the production of CO2 in the surface ocean.

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Ocean acidification changes abiotic processes but not biotic processes in coral reef sediments

In coral reefs, sediments play a crucial role in element cycling by contributing to primary production and the remineralization of organic matter. We studied how future ocean acidification (OA) will affect biotic and abiotic processes in sediments from two coral reefs of the Great Barrier Reef, Australia. This was investigated in the laboratory under conditions where water-sediment exchange was dominated by molecular diffusion (Magnetic Island) or by porewater advection (Davies Reef). OA conditions (+ΔpCO2: 170–900 µatm, -ΔpH: 0.1–0.4) did not affect photosynthesis, aerobic and anaerobic organic matter remineralization and growth of microphytobenthos. However, microsensor measurements showed that OA conditions reduced the porewater pH. Under diffusive conditions these changes were limited to the upper sediment layers. In contrast, advective conditions caused a deeper penetration of low pH water into the sediment resulting in an earlier pH buffering by dissolution of calcium carbonate (CaCO3). This increased the dissolution of Davis Reef sediments turning them from net precipitating (-0.8 g CaCO3 m-2 d-1) under ambient to net dissolving (1 g CaCO3 m-2 d-1) under OA conditions. Comparisons with in-situ studies on other reef sediments show that our dissolution rates are reasonable estimates for field settings. We estimate that enhanced dissolution due to OA will only have a minor effect on net ecosystem calcification of the Davies Reef flat (< 4%). However, it could decrease recent sediment accumulation rates in the lagoon by up to 31% (by 0.2–0.4 mm year-1), reducing valuable reef space. Furthermore, our results indicate that high-magnesium calcite is predominantly dissolving in the studied sediments and a drastic reduction in this mineral can be expected on Davis Reef lagoon in the near future, leaving sediments of an altered mineral composition. This study demonstrates that biotic sediment processes will likely not directly be affected by OA. Ensuing indirect effects of OA-induced sediment dissolution on biotic processes are discussed.

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The acclimation process of phytoplankton biomass, carbon fixation and respiration to the combined effects of elevated temperature and pCO2 in the northern South China Sea

We conducted shipboard microcosm experiments at both off-shore (SEATS) and near-shore (D001) stations in the northern South China Sea (NSCS) under three treatments, low temperature and low pCO2 (LTLC), high temperature and low pCO2 (HTLC), and high temperature and high pCO2 (HTHC). Biomass of phytoplankton at both stations were enhanced by HT. HTHC did not affect phytoplankton biomass at station D001 but decreased it at station SEATS. HT alone increased net primary productivity by 234% at station SEATS and by 67% at station D001 but the stimulating effect disappeared when HC was combined. HT also increased respiration rate by 236% at station SEATS and by 87% at station D001 whereas HTHC reduced it by 61% at station SEATS and did not affect it at station D001. Overall, our findings indicate that the positive effect of ocean warming on phytoplankton assemblages in NSCS could be damped or offset by ocean acidification.

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Daily variation in net primary production and net calcification in coral reef communities exposed to elevated pCO2

The threat represented by ocean acidification (OA) for coral reef has received considerable attention because of the sensitivity of calcifiers to changing water carbonate chemistry. However most studies have focused on the organismic response of calcification to OA, and only a few have addressed community-level effects, or investigated parameters other than calcification, such as photosynthesis. Light (Photosynthetically Active Radiation, PAR) is a driver of biological processes on coral reefs, and the possibility that these processes might be perturbed by OA has important implications for community function. Here we investigate how CO2 enrichment affects the relationships between PAR and community net O2 production (Pnet), and between PAR and community net calcification (Gnet), using experiments on three coral communities constructed to match (i) the back reef of Moorea, French Polynesia, (ii) the fore reef of Moorea, and (iii) the reef flat of Oahu, Hawaii. The results were used to test the hypothesis that OA affects the relationship between Pnet and Gnet. For the three communities tested, pCO2 did not affect the Pnet-PAR relationship, but it affected the intercept of the hyperbolic tangent curve fitting the Gnet-PAR relationship for both reef communities in Moorea (but not in Oahu). For the three communities, the slopes of the linear relationships between Pnet and Gnet were not affected by OA, although the intercepts were depressed by the inhibitory effect of high pCO2 on Gnet. Our result indicates that OA can modify the balance between net calcification and net photosynthesis of reef communities by depressing community calcification, but without affecting community photosynthesis.

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Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms

In contrast to clear stimulatory effects of rising temperature, recent studies of the effects of CO2 on planktonic bacteria have reported conflicting results. To better understand the potential impact of predicted climate scenarios on the development and performance of bacterial communities, we performed bifactorial mesocosm experiments (pCO2 and temperature) with Baltic Sea water, during a diatom dominated bloom in autumn and a mixed phytoplankton bloom in summer. The development of bacterial community composition (BCC) followed well-known algal bloom dynamics. A principal coordinate analysis (PCoA) of bacterial OTUs (operational taxonomic units) revealed that phytoplankton succession and temperature were the major variables structuring the bacterial community whereas the impact of pCO2 was weak. Prokaryotic abundance and carbon production, and organic matter concentration and composition were partly affected by temperature but not by increased pCO2. However, pCO2 did have significant and potentially direct effects on the relative abundance of several dominant OTUs; in some cases, these effects were accompanied by an antagonistic impact of temperature. Our results suggest the necessity of high-resolution BCC analyses and statistical analyses at the OTU level to detect the strong impact of CO2 on specific bacterial groups, which in turn might also influence specific organic matter degradation processes.

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Iron availability modulates the effects of future CO2 levels within the marine planktonic food web

Ocean acidification (OA) due to increased anthropogenic CO2 emissions is affecting marine ecosystems at an unprecedented rate, altering biogeochemical cycles. Direct empirical studies on natural communities are required to analyse the interactive effects of multiple stressors while spanning multiple trophic levels. We investigated the interactive effects of changes in CO2 and iron availability on functional plankton groups. We used mesocosms manipulating the carbonate system from the start to achieve present (low concentration, LC) and predicted future pCO2 levels (high concentration, HC). To manipulate dissolved iron (dFe), half of the mesocosms were amended with 70 nM (final concentration) of the siderophore desferoxamine B (DFB) on Day 7 (+DFB and -DFB treatments). Manipulation of both CO2 and DFB increased dFe compared to the control. During the 22 experimental days, the plankton community structure showed 2 distinct phases. In phase 1 (Days 1-10), only bacterioplankton abundances increased at elevated pCO2. In contrast, a strong community response was evident in phase 2 (Days 11-22) due to DFB addition. Biomass of the coccolithophore Emiliania huxleyi increased massively at LC+DFB. HC negatively affected E. huxleyi and Synechococcus sp., and high dFe (+DFB) had a positive effect on both. The rest of the plankton community was unaffected by the treatments. Increased dFe partially mitigated the negative effect of HC imposed on the coccolithophores, indicating that E. huxleyi was able to acclimate better to OA. This physiological iron-mediated acclimation can diminish the deleterious effects of OA on carbon export and the rain ratio, thus affecting food web dynamics and future ecosystem functioning.

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Using prokaryotes for carbon capture storage

Geological storage of CO2 is a fast-developing technology that can mitigate rising carbon emissions. However, there are environmental concerns with the long-term storage and implications of a leak from a carbon capture storage (CCS) site. Traditional monitoring lacks clear protocols and relies heavily on physical methods. Here, we discuss the potential of biotechnology, focusing on microbes with a natural ability to utilize and assimilate CO2 through different metabolic pathways. We propose the use of natural microbial communities for CCS monitoring and CO2 utilization, and, with examples, demonstrate how synthetic biology may maximize CO2 uptake within and above storage sites. An integrated physical and biological approach, combined with metagenomics data and biotechnological advances, will enhance CO2 sequestration and prevent large-scale leakages.

Trends

Microorganisms have the ability to respond quickly to environmental changes and to bind CO2, potentially removing it from the surrounding environment.

High-throughput sequencing can be used to identify the microbial metagenomic fingerprint, which can be used to develop simplified, efficient genetic methods to monitor CCS sites.

CCS monitoring would be most effective with a multidisciplinary monitoring program, combining geology, biogeochemistry, physics, microbiology, molecular biology, and genomics.

The advances in our knowledge in prokaryotic genomics, metabolic pathways, microbial communities, and the potential to engineer CO2 binding properties in microbes provide opportunities for transforming CCS sites into bioreactors for value-added chemicals.

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Twenty years of marine carbon cycle observations at Devils Hole Bermuda provide insights into seasonal hypoxia, coral reef calcification, and ocean acidification

Open–ocean observations have revealed gradual changes in seawater carbon dioxide (CO2) chemistry resulting from uptake of atmospheric CO2 and ocean acidification (OA), but, with few long–term records (>5 years) of the coastal ocean that can reveal the pace and direction of environmental change. In this paper, observations collected from 1996 to 2016 at Harrington Sound, Bermuda, constitute one of the longest time–series of coastal ocean inorganic carbon chemistry. Uniquely, such changes can be placed into the context of contemporaneous offshore changes observed at the nearby Bermuda Atlantic Time-series Study (BATS) site. Onshore, surface dissolved inorganic carbon (DIC) and partial pressure of CO2 (pCO2; >10% change per decade) have increased and OA indicators such as pH and calcium carbonate (CaCO3) saturation state (Ω) decreased from 1996 to 2016 at a rate of two to three times that observed offshore at BATS. Such changes, combined with reduction of total alkalinity over time, reveal a complex interplay of biogeochemical processes influencing Bermuda reef metabolism, including net ecosystem production (NEP = gross primary production–autotrophic and heterotrophic respiration) and net ecosystem calcification (NEC = gross calcification–gross CaCO3 dissolution). These long–term data show a seasonal shift between wintertime net heterotrophy and summertime net autotrophy for the entire Bermuda reef system. Over annual time-scales, the Bermuda reef system does not appear to be in trophic balance, but rather slightly net heterotrophic. In addition, the reef system is net accretive (i.e., gross calcification > gross CaCO3 dissolution), but there were occasional periods when the entire reef system appears to transiently shift to net dissolution. A previous 5–year study of the Bermuda reef suggested that net calcification and net heterotrophy have both increased. Over the past 20 years, rates of net calcification and net heterotrophy determined for the Bermuda reef system have increased by ~30%, most likely due to increased coral nutrition occurring in concert with increased offshore productivity in the surrounding subtropical North Atlantic Ocean. Importantly, this long–term study reveals that other environmental factors (such as coral feeding) can mitigate against the effects of ocean acidification on coral reef calcification, at least over the past couple of decades.

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Special edition of Estuarine, Coastal and Shelf Science – “Ocean acidification in the Mediterranean Sea: pelagic mesocosm experiments”

The topic of ocean acidification has received extensive attention in a recently published special edition of the journal Estuarine, Coastal and Shelf Science. Volume 186, Part A presents a series of 12 research papers focusing on pelagic mesocosm experiments conducted in the Mediterranean Sea in 2012 and 2013. Plankton plays a key role in the global carbon cycle. It is therefore important to project the evolution of plankton community structure and function in a future high-CO2 world. Several results from experiments conducted at the community level have shown increased rates of community primary production and shifts in community composition as a function of increasing pCO2. However, the great majority of these – experiments have been performed under high natural or nutrient-enriched conditions and very few data are available in areas with naturally low levels of nutrient and chlorophyll i.e. oligotrophic areas such as the Mediterranean Sea, although they represent a large and expanding part of the ocean surface. In the frame of the European Mediterranean Sea Acidification in a changing climate project (MedSeA; http://medsea-project.eu), large-scale in situ mesocosms (9 x 50 m3, 12 m deep) have been used to quantify the potential effects of CO2 enrichment in two coastal areas of the Mediterranean Sea: the bay of Calvi (Corsica, France) in June/July 2012 and the bay of Villefranche (France) in February/March 2013. These two experiments gathered the expertise of more than 25 scientists from 7 institutes and 6 countries (France, Greece, Spain, UK, Italy, Belgium, US).

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Influence of ocean acidification on plankton community structure during a winter-to-summer succession: An imaging approach indicates that copepods can benefit from elevated CO2 via indirect food web effects

Plankton communities play a key role in the marine food web and are expected to be highly sensitive to ongoing environmental change. Oceanic uptake of anthropogenic carbon dioxide (CO2) causes pronounced shifts in marine carbonate chemistry and a decrease in seawater pH. These changes–summarized by the term ocean acidification (OA)–can significantly affect the physiology of planktonic organisms. However, studies on the response of entire plankton communities to OA, which also include indirect effects via food-web interactions, are still relatively rare. Thus, it is presently unclear how OA could affect the functioning of entire ecosystems and biogeochemical element cycles. In this study, we report from a long-term in situ mesocosm experiment, where we investigated the response of natural plankton communities in temperate waters (Gullmarfjord, Sweden) to elevated CO2 concentrations and OA as expected for the end of the century (~760 μatm pCO2). Based on a plankton-imaging approach, we examined size structure, community composition and food web characteristics of the whole plankton assemblage, ranging from picoplankton to mesozooplankton, during an entire winter-to-summer succession. The plankton imaging system revealed pronounced temporal changes in the size structure of the copepod community over the course of the plankton bloom. The observed shift towards smaller individuals resulted in an overall decrease of copepod biomass by 25%, despite increasing numerical abundances. Furthermore, we observed distinct effects of elevated CO2 on biomass and size structure of the entire plankton community. Notably, the biomass of copepods, dominated by Pseudocalanus acuspes, displayed a tendency towards elevated biomass by up to 30–40% under simulated ocean acidification. This effect was significant for certain copepod size classes and was most likely driven by CO2-stimulated responses of primary producers and a complex interplay of trophic interactions that allowed this CO2 effect to propagate up the food web. Such OA-induced shifts in plankton community structure could have far-reaching consequences for food-web interactions, biomass transfer to higher trophic levels and biogeochemical cycling of marine ecosystems.

Continue reading ‘Influence of ocean acidification on plankton community structure during a winter-to-summer succession: An imaging approach indicates that copepods can benefit from elevated CO2 via indirect food web effects’

A possible CO2 leakage event: Can the marine microbial community be recovered?

Bacterial communities have been studied to a much lesser degree than macrofauna in the case of a CO2 release. The resistance capacity of marine bacteria is well known, but their possible responses and their ability to recover after a CO2 release has not been investigated. Therefore, this work evaluated the responses of a marine bacterial community after 96 h of CO2 exposure under diverse pH treatments (7.8 as control without CO2, 7.0, 6.5, and 6.0) and 24 h after CO2 exposure. Results showed that the respiration activity and the diversity of the community were affected in all pH treatments. However, after 24 h without CO2 enrichment, the respiration activity and diversity increased, showing a partial recovery. Consequently, bacterial responses have the potential to be used as a monitoring tool for risk assessment related to carbon capture and storage techniques or in any similar CO2 enrichment situations.

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Future harvest of living resources in the Arctic Ocean north of the Nordic and Barents Seas: A review of possibilities and constraints

Global warming drives changes in oceanographic conditions in the Arctic Ocean and the adjacent continental slopes. This may result in favourable conditions for increased biological production in waters at the northern continental shelves. However, production in the central Arctic Ocean will continue to be limited by the amount of light and by vertical stratification reducing nutrient availability. Upwelling conditions due to topography and inflowing warm and nutrient rich Atlantic Water may result in high production in areas along the shelf breaks. This may particularly influence distribution and abundance of sea mammals, as can be seen from analysis of historical records of hunting. The species composition and biomass of plankton, fish and shellfish may be influenced by acidification due to increased carbon dioxide uptake in the water, thereby reducing the survival of some species. Northwards shift in the distribution of commercial species of fish and shellfish is observed in the Barents Sea, especially in the summer period, and is related to increased inflow of Atlantic Water and reduced ice cover. This implies a northward extension of boreal species and potential displacement of lipid-rich Arctic zooplankton, altering the distribution of organisms that depend on such prey. However, euphausiid stocks expanding northward into the Arctic Ocean may be a valuable food resource as they may benefit from increases in Arctic phytoplankton production and rising water temperatures. Even though no scenario modelling or other prediction analyses have been made, both scientific ecosystem surveys in the northern areas, as well as the fisheries show indications of a recent northern expansion of mackerel (Scomber scombrus), cod (Gadus morhua), haddock (Melanogrammus aeglefinus) and capelin (Mallotus villosus). These stocks are found as far north as the shelf-break north of Svalbard. Greenland halibut (Reinhardtius hippoglossoides), redfish (Sebastes spp.) and shrimp (Pandalus borealis) are also present in the slope waters between the Barents Sea and the Arctic Ocean. It is assumed that cod and haddock have reached their northernmost limit, whereas capelin and redfish have potential to expand their distribution further into the Arctic Ocean. Common minke whales (Balaenoptera acutorostrata) and harp seals (Pagophilus groenlandicus) may also be able to expand their distribution into the Arctic Ocean. The abundance and distribution of other species may change as well – to what degree is unknown.

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Effects of ocean acidification on the potency of macroalgal allelopathy to a common coral

Many coral reefs have phase shifted from coral to macroalgal dominance. Ocean acidification (OA) due to elevated CO2 is hypothesised to advantage macroalgae over corals, contributing to these shifts, but the mechanisms affecting coral-macroalgal interactions under OA are unknown. Here, we show that (i) three common macroalgae are more damaging to a common coral when they compete under CO2 concentrations predicted to occur in 2050 and 2100 than under present-day conditions, (ii) that two macroalgae damage corals via allelopathy, and (iii) that one macroalga is allelopathic under conditions of elevated CO2, but not at ambient levels. Lipid-soluble, surface extracts from the macroalga Canistrocarpus (=Dictyota) cervicornis were significantly more damaging to the coral Acropora intermedia growing in the field if these extracts were from thalli grown under elevated vs ambient concentrations of CO2. Extracts from the macroalgae Chlorodesmis fastigiata and Amansia glomerata were not more potent when grown under elevated CO2. Our results demonstrate increasing OA advantages seaweeds over corals, that algal allelopathy can mediate coral-algal interactions, and that OA may enhance the allelopathy of some macroalgae. Other mechanisms also affect coral-macroalgal interactions under OA, and OA further suppresses the resilience of coral reefs suffering blooms of macroalgae.

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Effect of elevated carbon dioxide on shoal familiarity and metabolism in a coral reef fish

Atmospheric CO2 is expected to more than double by the end of the century. The resulting changes in ocean chemistry will affect the behaviour, sensory systems and physiology of a range of fish species. Although a number of past studies have examined effects of CO2 in gregarious fishes, most have assessed individuals in social isolation, which can alter individual behaviour and metabolism in social species. Within social groups, a learned familiarity can develop following a prolonged period of interaction between individuals, with fishes preferentially associating with familiar conspecifics because of benefits such as improved social learning and greater foraging opportunities. However, social recognition occurs through detection of shoal-mate cues; hence, it may be disrupted by near-future CO2 conditions. In the present study, we examined the influence of elevated CO2 on shoal familiarity and the metabolic benefits of group living in the gregarious damselfish species the blue-green puller (Chromis viridis). Shoals were acclimated to one of three nominal CO2 treatments: control (450 µatm), mid-CO2 (750 µatm) or high-CO2 (1000 µatm). After a 4–7 day acclimation period, familiarity was examined using a choice test, in which individuals were given the choice to associate with familiar shoal-mates or unfamiliar conspecifics. In control conditions, individuals preferentially associated with familiar shoal-mates. However, this association was lost in both elevated-CO2 treatments. Elevated CO2 did not impact the calming effect of shoaling on metabolism, as measured using an intermittent-flow respirometry methodology for social species following a 17–20 day acclimation period to CO2 treatment. In all CO2 treatments, individuals exhibited a significantly lower metabolic rate when measured in a shoal vs. alone, highlighting the complexity of shoal dynamics and the processes that influence the benefits of shoaling.

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Impact of environmental factors on bacterioplankton communities

Aquatic bacteria are main drivers of biogeochemical cycles and contribute predominantly to organic matter and nutrient recycling. As a high biodiversity is assumed to stabilize ecosystem functioning, it is necessary to understand the bacterial community dynamics and their structuring factors. It is known that different taxa are dominant across different habitats and seasons. This indicates an occurrence of species sorting by community structuring environmental factors. A first attempt for the understanding of bacterial distribution is to test for a correlation between microbial composition and measured environmental variables. In order to get further insights into the impact of environmental factors on bacterial communities, this thesis assessed the influence of major structuring drivers by using 16S rRNA gene amplicon sequencing, bacterial bulk parameters and interdisciplinary approaches in laboratory experiments and field studies.

In a field study in the Benguela upwelling system, the influence of different levels of primary production and the planktonic succession on bacterial community composition and its development was investigated. Community analysis revealed a clustering of different microbial assemblages along aging upwelled water. This zonation was mainly driven by phytoplankton composition and abundance and the spatial differences were comparable with a temporal succession that occurs during phytoplankton blooms in temperate coastal waters. A dominance of Bacteroidetes and Gammaproteobacteria was observed during algal blooming and high abundance of “Pelagibacterales” was found in regions with low algal abundance. Overall, this study highlightes the strong impact of quality and quantity of phytoplankton and nutrients on the bacterial communities.

A laboratory experiment with Baltic Sea water was performed to better understand the potential impact of rising temperature and CO2 on planktonic bacteria. The development of the bacterial community composition was followed in bifactorial mesocosm experiments during a diatom bloom in autumn and a phytoplankton bloom in summer. The results confirmed that phytoplankton succession and temperature were the major variables structuring the bacterial community. The impact of CO2 on the broad community was weak but high-resolution community analyses revealed a strong effect on specific bacterial groups, which might play important roles in specific organic matter degradation processes.

The response of bacterial communities to a disturbance by a saline intrusion could be investigated during a major Baltic inflow event. Community structuring factors were dominated by mixing of the inflow water with the former bottom water. Although the inflow had a selecting effect on the bacterial community, some immigrated taxa showed increased potential activity and seem to profit from changing environmental conditions. These results suggest a potential impact of inflow events on bacterial functions and therefore on biogeochemical processes.

Altogether, the results confirm the strong structuring effects of environmental conditions on bacterial community composition. Furthermore, high-resolution sequencing enabled an identification of specific affected taxa, which in turn give first clues for the impact of the investigated factors on specific bacterial functions.

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Insignificant effects of elevated CO2 on bacterioplankton community in a eutrophic coastal mesocosm experiment

There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, Southern China. We found that the elevated CO2 hardly altered the network structure of the bacterioplankton taxa present with high abundance but appeared to reassemble the community network of taxa present with low abundance by sequencing of the bacterial 16S rRNA gene V3-V4 region and ecological network analysis. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteriia group, which plays an important role in the microbial carbon pump, showed higher relative abundance under elevated CO2 condition during the developing stage of the phytoplankton bloom in the mesocosms. Compared to the CO2 enrichment, the phytoplankton bloom had more pronounced effects on baterioplankton community structure. Our results suggest that the bacterioplankton community in this subtropical, high nutrient coastal environment is relatively insensitive to changes in seawater carbonate chemistry.

Continue reading ‘Insignificant effects of elevated CO2 on bacterioplankton community in a eutrophic coastal mesocosm experiment’

Ciliate and mesozooplankton community response to increasing CO2 levels in the Baltic Sea: insights from a large-scale mesocosm experiment (update)

Community approaches to investigating ocean acidification (OA) effects suggest a high tolerance of micro- and mesozooplankton to carbonate chemistry changes expected to occur within this century. Plankton communities in the coastal areas of the Baltic Sea frequently experience pH variations partly exceeding projections for the near future both on a diurnal and seasonal basis. We conducted a large-scale mesocosm CO2 enrichment experiment ( ∼  55 m3) enclosing the natural plankton community in Tvärminne–Storfjärden for 8 weeks during June–August 2012 and studied community and species–taxon response of ciliates and mesozooplankton to CO2 elevations expected for this century. In addition to the response to fCO2, we also considered temperature and chlorophyll a variations in our analyses. Shannon diversity of ciliates significantly decreased with fCO2 and temperature with a greater dominance of smaller species. The mixotrophic Myrionecta rubra seemed to indirectly and directly benefit from higher CO2 concentrations in the post-bloom phase through increased occurrence of picoeukaryotes (most likely Cryptophytes) and Dinophyta at higher CO2 levels. With respect to mesozooplankton, we did not detect significant effects for either total abundance or for Shannon diversity. The cladocera Bosmina sp. occurred at distinctly higher abundance for a short time period during the second half of the experiment in three of the CO2-enriched mesocosms except for the highest CO2 level. The ratio of Bosmina sp. with empty to embryo- or resting-egg-bearing brood chambers, however, was significantly affected by CO2, temperature, and chlorophyll a. An indirect CO2 effect via increased food availability (Cyanobacteria) stimulating Bosmina sp. reproduction cannot be ruled out. Although increased regenerated primary production diminishes trophic transfer in general, the presence of organisms able to graze on bacteria such as cladocerans may positively impact organic matter transfer to higher trophic levels. Thus, under increasing OA in cladoceran-dominated mesozooplankton communities, the importance of the microbial loop in the pelagic zone may be temporarily enhanced and carbon transfer to higher trophic levels may be stimulated.

Continue reading ‘Ciliate and mesozooplankton community response to increasing CO2 levels in the Baltic Sea: insights from a large-scale mesocosm experiment (update)’


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