Seagrasses, such as the endemic Mediterranean species Posidonia oceanica, are critical components of coastal marine ecosystems, providing essential ecosystem services, including carbon sequestration, nutrient cycling, and habitat formation. P. oceanica forms extensive meadows that serve as biodiversity hotspots and play a crucial role in mitigating climate change through long-term carbon storage. Despite their ecological significance, the interactions between P. oceanica and associated organisms, as well as their combined contributions to biogeochemical cycling, remain poorly understood, particularly under changing environmental conditions. This thesis explores the carbon and nitrogen cycling processes within the P. oceanica holobiont, focusing on the epiphytic and microbial communities, microbial driven metabolic processes, and the interaction between P. oceanica and larger associated invertebrates, such as the sponge Chondrilla nucula. Through field and laboratory experiments, this work demonstrates the significant role of epiphytic algae in the primary production of the seagrass holobiont, contributing a substantial portion of net primary production. Nitrogen cycling processes such as N₂ fixation, nitrification, and denitrification in the seagrass phyllosphere were quantified, revealing their importance in meeting the N demands of the seagrass holobiont, especially under natural ocean acidification conditions. Experiments near marine CO₂ vents indicated that ocean acidification accelerates net primary production and nitrogen cycling, while the structure of the microbial community associated with P. oceanica leaves remains largely stable. The facultative mutualism between P. oceanica and the sponge C. nucula further highlights the complexity of the seagrass holobiont. P. oceanica releases dissolved organic carbon, which meets a portion of the sponge’s respiratory carbon demand. Conversely, C. nucula releases dissolved inorganic nitrogen, including ammonium and nitrate generated by microbial nitrification, which supports seagrass growth. Stable isotope analysis suggests that the association facilitates nutrient exchange, with P. oceanica preferentially absorbing sponge-derived ammonium, while epiphytes may benefit from sponge-produced nitrate. This dynamic reduces seasonal fluctuations in productivity, stabilizing the seagrass ecosystem during periods of senescence. Sponge-associated nitrification contributes to the nitrogen budget of the seagrass holobiont, potentially reducing nutrient limitations in oligotrophic Mediterranean waters. The microbiome of C. nucula plays a key role in these processes, harboring nitrifiers that mediate the production of nitrate. High-throughput sequencing revealed taxonomic diversity among microbes associated with both the sponge and seagrass, including microorganisms involved in carbon and nitrogen cycling processes. These microbial communities not only mediate nutrient exchange within the seagrass-sponge association but also contribute to the overall resilience and productivity of the ecosystem. This thesis highlights the intricate interactions within the P. oceanica holobiont and its nested ecosystem with C. nucula. These findings underscore the importance of microbial and epiphytic communities in maintaining the resilience and productivity of seagrass meadows, particularly in nutrient-poor environments like the Mediterranean Sea. This research enhances our understanding of the biogeochemical processes that support seagrass ecosystem stability and provides valuable insights to guide conservation efforts in the face of climate change and anthropogenic pressures.
Continue reading ‘Microbe-host associations as drivers of benthic carbon and nitrogen cycling in a changing Mediterranean Sea’Posts Tagged 'BRcommunity'
Microbe-host associations as drivers of benthic carbon and nitrogen cycling in a changing Mediterranean Sea
Published 14 April 2025 Science ClosedTags: biological response, BRcommunity, field, Mediterranean, nitrogen fixation, otherprocess, phanerogams, primary production, respiration, vents
Skeletal morphometrics suggests high fitness of hybrid coral recruits under ocean warming and acidification
Published 10 April 2025 Science ClosedTags: biological response, BRcommunity, corals, laboratory, morphology, multiple factors, South Pacific, temperature
Anthropogenic greenhouse gas emissions increase sea surface temperature and acidification, inhibiting calcification of reef-building corals. While ocean acidification is known to hinder skeletal development of newly settled coral recruits, little is known of its effects on older purebred or interspecific hybrid recruits, or its combined effects with temperature. Using 3D X-ray microscopy, we found that predicted mid-century ocean warming and acidification conditions (28 °C, 685 ppm pCO2) negatively affected the skeletal development of 7-month-old Acropora purebreds and hybrids in one direction (Acropora cf. kenti mother x Acropora loripes father). Conversely, the skeletal parameters of reciprocal hybrids (A. loripes mother x A. cf. kenti father) remained unaffected. Skeletal measurements taken from 3D data revealed patterns overlooked by previous 2D measurements, leading support to the likelihood of hybrid vigour in hybrids of A. loripes (mother) and A. cf. kenti (father) and the potential of interspecific hybridization as a reef restoration tool to enhance coral resilience.
Continue reading ‘Skeletal morphometrics suggests high fitness of hybrid coral recruits under ocean warming and acidification’Ocean acidification disrupts the energy balance and impairs the health of mussels (Mytilus coruscus) by weakening their trophic interactions with microalgae and intestinal microbiome
Published 4 April 2025 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, mollusks, North Pacific, otherprocess, performance, physiology, phytoplankton, prokaryotes
Highlights
- Ocean acidification disrupts mussel energy balance by weakening trophic interactions.
- Mussels exposed to acidified conditions show reduced energy gain from microalgae.
- Energy imbalance caused by acidification impairs mussel health and fitness.
- Ocean acidification can threaten mussel farming and marine ecosystem stability.
Abstract
Despite extensive research in the last two decades, exploring the potential mechanisms underlying the sensitivity and resistance of marine organisms to ocean acidification is still imperative. Species interactions can play a role in these mechanisms, but the extent to which they modulate organismal responses to ocean acidification remains largely unknown. Here, we investigated how ocean acidification (pH 7.7) affects energy homeostasis and fitness of mussels (Mytilus coruscus) by assessing their physiological responses, intestinal microbiome and nutritional quality of their food (microalgae). Under ocean acidification, the mussels had reduced feeding rates by 34 % and reduced activities of digestive enzymes (pepsin by 39 %, trypsin by 28 % and lipase by 53 %) due to direct exposure to acidified seawater and increased phenol content of microalgae. Richness and diversity of intestinal microbiome (OTU, Chao1 index and Shannon index) were also lowered by ocean acidification, which can undermine nutrient absorption. On the other hand, energy expenditure of mussels increased by 53 % under ocean acidification, which was associated with the upregulation of antioxidant defence (SOD, CAT and GPx activities). Consequently, energy reserves in mussels decreased by 28 %, which were underpinned by the reduction in protein, carbohydrate and lipid contents. Overall, we demonstrate that ocean acidification could disrupt herbivore-algae and host-microbe interactions, thereby lowering the energy balance and impairing the health of marine organisms. This can have ramifications on the population and energy dynamics of marine communities in the acidifying ocean.
Continue reading ‘Ocean acidification disrupts the energy balance and impairs the health of mussels (Mytilus coruscus) by weakening their trophic interactions with microalgae and intestinal microbiome’Detrital source diversity moderates decomposition and nutrient release in current and future ocean conditions
Published 25 March 2025 Science ClosedTags: algae, biological response, BRcommunity, laboratory, multiple factors, South Pacific, temperature
Highlights
- The decomposition of mixed and single detrital sources was assessed in current and future ocean conditions.
- The identity of detrital sources significantly influenced decomposition rates, and carbon and nutrient release.
- Detrital mixing significantly decreased variation in mass loss and nitrogen release.
- Ocean warming sometimes increased rates of decomposition of macrophyte detritus.
- Ocean acidification did not significantly influence detrital mass loss or nutrient release.
Abstract
The complex interactions between detrital diversity and ocean climate change are not well understood. Here, we used sixteen outdoor raceways to test the hypothesis that ocean warming, and acidification would increase rates of decomposition and nutrient release from detritus of common macroalgae, but the magnitude of change would vary for single detrital sources compared to mixed sources. Our litter-bag experiment to test this hypothesis had six types of macroalgal detritus: (i) Ecklonia radiata, (ii) Sargassum vestitum, (iii) Caulerpa filiformis, (iv) Ecklonia and Sargassum mix, (v) Ecklonia and Caulerpa mix, and (vi) Sargassum and Caulerpa mix. The experimental design also had an orthogonal set of treatments testing effects of ocean warming and acidification, individually and combined, based on the RCP 8.5 climate model for 2081–2100. The identity of detrital sources significantly influenced decomposition rates, carbon liberation and nutrient release. The treatments with two detrital sources did not have increased rates of decomposition and nutrient release compared to single sources. However, detrital source mixing significantly moderated variation in decomposition and nutrient release rates. While ocean acidification had little effect on the decomposition of macroalgal detritus, ocean warming tended to increase rates of decomposition. Given that excessive decomposition can lead to severe anoxia, the results suggest the risk of this occurring will be greater in the warmer oceans of coming decades. In such circumstances, the moderating force of detrital diversity may become increasingly important in maintaining benthic oxygen concentrations and detritus-based production.
Continue reading ‘Detrital source diversity moderates decomposition and nutrient release in current and future ocean conditions’Spatiotemporal dynamics of marine heatwaves and ocean acidification affecting coral environments in the Philippines
Published 21 March 2025 Science ClosedTags: biological response, BRcommunity, chemistry, corals, modeling, North Pacific, regionalmodeling
The coral reefs in the Philippines are facing an unprecedented crisis. This study, based on a comprehensive analysis of marine heatwaves (MHWs), degree heating weeks (DHWs), and ocean acidification (OA) indices derived from satellite observations and reanalysis data, reveals how thermal stress and OA have progressively eroded coral ecosystems from 1985 to 2022. This study analyzed 12 critical coral habitats adjacent to the Philippines. The monthly average sea surface temperature (SST) in the study area ranged from 26.6 °C to 29.3 °C. The coast of Lingayen Gulf was identified as the most vulnerable coral reef site in the Philippines, followed by Davao Oriental and Polillo Island. The coast of Lingayen Gulf recorded the highest total MHW days in 2022, amounting to 293 days. The coast of Lingayen Gulf also reached the highest DHW values in July and August 2022, with 8.94 °C weeks, while Davao Oriental experienced the most extended average duration of MHWs in 2020, lasting 90.5 days per event. Large-scale climate features such as the El Niño–Southern Oscillation (ENSO) and the Pacific Decadal Oscillation (PDO) significantly influenced the study area’s SST anomalies and MHW events. High-risk coral bleaching periods, such as 1988–1989, 1998–1999, 2007–2008, and 2009–2010, were characterized by transitions from El Niño and positive PDO phases, to La Niña and negative PDO phases. However, since 2015, global warming has led to high cumulative heat stress without specific climate background patterns. We propose a Coral Marine Environmental Vulnerability Index (CoralVI) to integrate the spatiotemporal dynamics of warming and acidification and their impacts on coral habitats. The data show a rapid increase in the marine environmental vulnerability of coral habitats in the Philippines in recent years, extending to almost the entire coastline, posing significant threats to coral survival.
Continue reading ‘Spatiotemporal dynamics of marine heatwaves and ocean acidification affecting coral environments in the Philippines’Eukaryotic phytoplankton drive a decrease in primary production in response to elevated CO2 in the tropical and subtropical oceans
Published 14 March 2025 Science ClosedTags: biological response, BRcommunity, community composition, field, North Pacific, phytoplankton, primary production
Significance
Marine phytoplankton, which contribute ~45% of global net primary production, are projected to be affected by ongoing ocean acidification (OA). However, the response of phytoplankton to acidification is not well constrained in ultraoligotrophic tropical and subtropical oceans where small (<20 µm) phytoplankton dominate. By conducting onboard microcosm experiments, we found community-level primary production decreased consistently following CO2 enrichment in the North Pacific Subtropical Gyre and northern South China Sea, while no significant changes were observed at the northernmost boundary of the subtropical gyre. Eukaryotic phytoplankton but not cyanobacteria were key drivers of these responses which occur primarily under nitrogen limitation. These findings enhance our understanding of OA impacts on phytoplankton and marine productivity in a changing climate.
Abstract
Ocean acidification caused by increasing anthropogenic CO2 is expected to impact marine phytoplankton productivity, yet the extent and even direction of these changes are not well constrained. Here, we investigate the responses of phytoplankton community composition and productivity to acidification across the western North Pacific. Consistent reductions in primary production were observed under acidified conditions in the North Pacific Subtropical Gyre and the northern South China Sea, whereas no significant changes were found at the northern boundary of the subtropical gyre. While prokaryotic phytoplankton showed little or positive responses to high CO2, small (<20 µm) eukaryotic phytoplankton which are primarily limited by low ambient nitrogen drove the observed decrease in community primary production. Extrapolating these results to global tropical and subtropical oceans predicts a potential decrease of about 5 Pg C y−1 in primary production in low Chl-a oligotrophic regions, which are anticipated to experience both acidification and stratification in the future.
Continue reading ‘Eukaryotic phytoplankton drive a decrease in primary production in response to elevated CO2 in the tropical and subtropical oceans’Quantifying coral-algal interactions in an acidified ocean: Sargassum spp. exposure mitigates low pH effects on Acropora cervicornis health
Published 3 March 2025 Science ClosedTags: algae, biological response, BRcommunity, corals, growth, laboratory, mesocosms, North Atlantic, physiology
Increasingly frequent large-scale pelagic Sargassum algae blooms in the Atlantic have become a problem for coastal ecosystems. The mass decay of these blooms reduces water quality for coastal flora and fauna. However, the effects of living Sargassum blooms on seawater quality and consequently coral reef ecosystems that rely on delicately balanced carbonate chemistry are more ambiguous. Future oceans are predicted to be more acidic as additional anthropogenic CO2 emissions are absorbed, potentially tipping the balance in favor of algal blooms at the cost of coral survival. This study aimed to simulate the indirect interaction between pelagic Sargassum spp. and Acropora cervicornis coral fragments from the Florida Reef in current-day and future ocean pH conditions over the course of 70 days in a mesocosm experimental system. Measurements of coral growth and health via buoyant weight and Pulse Amplitude Modulated (PAM) fluorescence measurements reveal an unexpected coral-algal interaction. After 1 month, coral growth was significantly reduced under ocean acidification conditions and exposure to Sargassum; at the same time quantum yield and maximum electron transport rate of photosynthesis were increased relative to control counterparts in ambient and future pH scenarios by up to 14% and 18% respectively. These improvements in photosynthetic efficiency did not translate to significant differences in growth by the final measurement time point. In addition, the presence of Sargassum spp. did not raise seawater pH in the system, raising questions about how it benefited photosynthetic efficiency in exposed corals. Heterotrophy of detrital algal matter is suspected to compensate for impaired photosynthesis of pH stressed corals. Therefore, despite their current negative reputation, Sargassum blooms could provide short term localized benefits to corals in present and future ocean conditions.
Continue reading ‘Quantifying coral-algal interactions in an acidified ocean: Sargassum spp. exposure mitigates low pH effects on Acropora cervicornis health’Impacts of ocean acidification on the palatability of two Antarctic macroalgae and the consumption of a grazer
Published 27 February 2025 Science ClosedTags: algae, Antarctic, biological response, BRcommunity, crustaceans, laboratory, performance
Increases in atmospheric CO2 have led to more CO2 entering the world’s oceans, decreasing the pH in a process called ’ocean acidification’. Low pH has been linked to impacts on macroalgal growth and stress, which can alter palatability to herbivores. Two common and ecologically important macroalgal species from the western Antarctic Peninsula, the unpalatable Desmarestia menziesii and the palatable Palmaria decipiens, were maintained under three pH treatments: ambient (pH 8.1), near future (7.7) and distant future (7.3) for 52 days and 18 days, respectively. Discs of P. decipiens or artificial foods containing extracts of D. menziesii from each treatment were presented to the amphipod Gondogeneia antarctica in feeding choice experiments. Additionally, G. antarctica exposed to the different treatments for 55 days were used in a feeding assay with untreated P. decipiens. For D. menziesii, extracts from the ambient treatment were eaten significantly more by weight than the other treatments. Similarly, P. decipiens discs from the ambient and pH 7.7 treatments were eaten more than those from the pH 7.3 treatment. There was no significant difference in the consumption by treated G. antarctica. These results suggest that ocean acidification may decrease the palatability of these macroalgae to consumers but not alter consumption by G. antarctica.
Continue reading ‘Impacts of ocean acidification on the palatability of two Antarctic macroalgae and the consumption of a grazer’Climate-driven shifts in Southern Ocean primary producers and biogeochemistry in CMIP6 models
Published 26 February 2025 Science ClosedTags: Antarctic, biogeochemistry, biological response, BRcommunity, chemistry, community composition, modeling, otherprocess, phytoplankton, regionalmodeling
As a net source of nutrients fuelling global primary production, changes in Southern Ocean productivity are expected to influence biological carbon storage across the global ocean. Following a high-emission, low-mitigation pathway (SSP5-8.5), we show that primary productivity in the Antarctic zone of the Southern Ocean is predicted to increase by up to 30 % over the 21st century. The ecophysiological response of marine phytoplankton experiencing climate change will be a key determinant in understanding the impact of Southern Ocean productivity shifts on the carbon cycle. Yet, phytoplankton ecophysiology is poorly represented in Coupled Model Intercomparison Project phase 6 (CMIP6) climate models, leading to substantial uncertainty in the representation of its role in carbon sequestration. Here we synthesise the existing spatial and temporal projections of Southern Ocean productivity from CMIP6 models, separated by phytoplankton functional type, and identify key processes where greater observational data coverage can help to improve future model performance. We find substantial variability between models in projections of light concentration (>15 000 (µE m−2 s−1)2) across much of the iron- and light-limited Antarctic zone. Projections of iron and light limitation of phytoplankton vary by up to 10 % across latitudinal zones, while the greatest increases in productivity occurs close to the coast. Temperature, pH and nutrients are less spatially variable – projections for 2090–2100 under SSP5-8.5 show zonally averaged changes of +1.6 °C and −0.45 pH units and Si* ([Si(OH)4]–[NO3–]) decreases by 8.5 µmol L−1. Diatoms and picophytoplankton and/or miscellaneous phytoplankton are equally responsible for driving productivity increases across the subantarctic and transitional zones, but picophytoplankton and miscellaneous phytoplankton increase at a greater rate than diatoms in the Antarctic zone. Despite the variability in productivity with different phytoplankton types, we show that the most complex models disagree on the ecological mechanisms behind these productivity changes. We propose that a sampling approach targeting the regions with the greatest rates of climate-driven change in ocean biogeochemistry and community assemblages would help to resolve the empirical principles underlying the phytoplankton community structure in the Southern Ocean.
Continue reading ‘Climate-driven shifts in Southern Ocean primary producers and biogeochemistry in CMIP6 models’The nasal microbiota of two marine fish species: diversity, community structure, variability and first insights into the impacts of climate change-related stressors
Published 25 February 2025 Science ClosedTags: biological response, BRcommunity, community composition, fish, laboratory, molecular biology, multiple factors, otherprocess, prokaryotes, temperature
Vertebrate nasal microbiota (NM) plays a key role regulating host olfaction, immunity, neuronal differentiation, and structuring the epithelium. However, little is known in fish. This study provides the first comprehensive analysis of the NM in two marine fish species, the European seabass and the Atlantic cod. Given its direct environmental exposure, fish NM is likely influenced by seawater fluctuations. We analysed the community structure, specificity regarding seawater, and interindividual variability of 32 to 38 fish reared under ambient conditions. Additionally, we conducted an experiment to investigate the influence of acidification and a simplified heatwave on cod NM (3 fish per replicate). High-throughput 16S rRNA sequencing revealed species-specific NM communities at the genus-level with Stenotrophomonas and Ralstonia dominating seabass and cod NM, respectively. This suggests potential habitat- or physiology-related adaptations. The most abundant bacterial genera in seabass NM were also present in seawater, suggesting environmental acquisition. Alpha diversity was highest in Brest seabass NM and variability greatest in Tromsø cod NM. Simulated climate change-related scenarios did not significantly alter cod NM structure. We propose a minimum of 13 cod rosettes per replicate for future studies. This research establishes a foundation for understanding marine fish NM and its response to environmental changes.
Continue reading ‘The nasal microbiota of two marine fish species: diversity, community structure, variability and first insights into the impacts of climate change-related stressors’High-resolution temporal assessment of physicochemical variability and water quality in tropical semi-enclosed bays and coral reefs
Published 24 February 2025 Science ClosedTags: biological response, BRcommunity, chemistry, community composition, corals, field, North Atlantic, otherprocess
Highlights
- Mangrove, seagrass, and coral habitats are at risk from global and local stressors
- We assessed >20 (a)biotic parameters and pollution at high temporal resolution
- Strong diel and seasonal variability was recorded in semi-enclosed bays
- The bays showed higher nutrient levels and ecotoxicological risks than nearby reefs
- A water quality monitoring framework for reef-associated habitats is provided
Abstract
Tropical coastlines featuring mangrove, seagrass, and coral habitats are of immense ecological and socio-economic importance, supporting biodiversity, carbon storage, coastal protection, fisheries, and tourism. However, climate change, coastal development, and low water quality increasingly threaten these interconnected coastal ecosystems, particularly in semi-enclosed bays where the impacts of these stressors are often amplified. Yet, physicochemical conditions are rarely assessed at sufficient temporal resolution (i.e., diel and seasonal variation) and time-integrated pollution monitoring is rarely performed. Here, we used a multi-disciplinary approach to assess >20 abiotic parameters characterizing two mangrove- and seagrass-dominated inland bays and two nearby coral reefs in Curaçao (southern Caribbean) during the cool, dry season and warm, wet season. This was combined with time-integrated pollution monitoring using bioindicators to assess nutrients and trace metal pollution (inland bays only), and passive samplers and bioassays to assess organic chemical pollution (all four sites) during the wet season. This approach revealed a previously undocumented extent of strong diel and seasonal environmental variability in Curaçao’s inland bays, with temperature, pH, and dissolved oxygen frequently reaching values predicted under moderate-to-severe future climate scenarios as outlined by the IPCC (2021). In addition, the inland bays had greater nutrient concentrations (especially ammonium) and potential ecotoxicological risks than the nearby reefs during the wet season due to run-off and anthropogenic activities. These findings emphasize the importance of high-resolution monitoring to understand risks across appropriate temporal scales and establish an environmental baseline against which future monitoring can be benchmarked. Moreover, our study provides a robust water quality assessment framework that can be used by natural resource managers to monitor reef-associated habitats and conserve their high ecological and socio-economic value. Overall, our work highlights the urgent need to improve monitoring, water quality, and protection of these valuable reef-associated habitats.
Continue reading ‘High-resolution temporal assessment of physicochemical variability and water quality in tropical semi-enclosed bays and coral reefs’What controls planktic foraminiferal calcification?
Published 17 February 2025 Science ClosedTags: biological response, BRcommunity, chemistry, field, globalmodeling, modeling, morphology, protists
Planktic foraminifera are key producers of pelagic carbonate, and their shell weight is suggested to have been influenced by the environment in which they calcify. However, there is debate about the use of size-normalised weight (SNW) as a proxy, as some authors invoke a carbonate system control on calcification (and by extension SNW as a pCO2 proxy), while others suggest that species optimum conditions, nutrient concentration, or temperature drive shell weight. To better understand this proxy, we investigate what drives SNW and whether discrepancies in the proposed control on weight are due to differing data collection methodologies and/or regionally different drivers. We integrate new and published SNW data with environmental hindcast data from the CMIP6 modelling suite. Using Bayesian regression modelling, we find that the environment alone does not explain the variability in SNW across species. Although physiology likely modulates the response to the environment, we find little evidence of a unifying driver at the ecogroup level. Instead, we identify species-specific responses associated with drivers including (but not limited to) the carbonate system, which are likely different between ocean basins. We hypothesise that this is partly influenced by cryptic species and regional phenotypic plasticity in changes to shell weight that are not well understood, such as the thickness of calcite deposited during some species’ reproductive phases. Consequently, which species to use as a pCO2 proxy or whether multiple species should be used in parallel to reduce uncertainty should be carefully considered. We strongly encourage the regional testing and calibration of pCO2–SNW relationships.
Continue reading ‘What controls planktic foraminiferal calcification?’Contrasting species-specific stress response to environmental pH determines the fate of coccolithophores in future oceans
Published 14 February 2025 Science ClosedTags: adaptation, biological response, BRcommunity, growth, laboratory, otherprocess, photosynthesis, physiology, phytoplankton, respiration
Highlights
- Molecular mechanisms dictating sensitivity of coccolithophores to pH remain elusive.
- Coastal species was resilient to pH changes, but ancient open-ocean species was not.
- Bloom-forming species showed unique molecular changes under stress.
- Cellular carbon fixation will be higher under future acidification.
Abstract
Molecular mechanisms driving species-specific environmental sensitivity in coccolithophores are unclear but crucial in understanding species selection and adaptation to environmental change. This study examined proteomic and physiological changes in three species under varying pH conditions. We showed that changing pH drives intracellular oxidative stress and changes membrane potential. Upregulation in antioxidant, DNA repair and cell cycle-related protein-groups indicated oxidative damage across high (pH 8.8) and low pH (pH 7.6) compared to control pH (pH 8.2), and correlated with reduced growth rates. Upregulation of mitochondrial proteins suggested higher metabolite demand for restoring cellular homeostasis under pH-induced stress. Photosynthetic rates generally correlated with CO2 availability, driving higher net carbon fixation rates at low pH. The intracellular pH-buffering capacity of the coastal Chrysotila carterae and high metabolic adaptability in the bloom-forming Gephyrocapsa huxleyi will likely facilitate their adaptation to ocean acidification or artificial ocean alkalinisation. However, the pH sensitivity of the ancient open-ocean Coccolithus braarudii will possibly result in reduced growth and shrinking of its ecological niche.
Continue reading ‘Contrasting species-specific stress response to environmental pH determines the fate of coccolithophores in future oceans’Considerations for determining warm-water coral reef tipping points
Published 10 February 2025 Science ClosedTags: biological response, BRcommunity, corals, multiple factors, review
Warm-water coral reefs are facing unprecedented human-driven threats to their continued existence as biodiverse functional ecosystems upon which hundreds of millions of people rely. These impacts may drive coral ecosystems past critical thresholds, beyond which the system reorganises, often abruptly and potentially irreversibly; this is what the Intergovernmental Panel on Climate Change (IPCC, 2022) define as a tipping point. Determining tipping point thresholds for coral reef ecosystems requires a robust assessment of multiple stressors and their interactive effects. In this perspective piece, we draw upon the recent global tipping point revision initiative (Lenton et al., 2023a) and a literature search to identify and summarise the diverse range of interacting stressors that need to be considered for determining tipping point thresholds for warm-water coral reef ecosystems. Considering observed and projected stressor impacts, we endorse the global tipping point revision’s conclusion of a global mean surface temperature (relative to pre-industrial) tipping point threshold of 1.2 °C (range 1–1.5 °C) and the long-term impacts of atmospheric CO2 concentrations above 350 ppm, while acknowledging that comprehensive assessment of stressors, including ocean warming response dynamics, overshoot, and cascading impacts, have yet to be sufficiently realised. These tipping point thresholds have already been exceeded, and therefore these systems are in an overshoot state and are reliant on policy actions to bring stressor levels back within tipping point limits. A fuller assessment of interacting stressors is likely to further lower the tipping point thresholds in most cases. Uncertainties around tipping points for such crucially important ecosystems underline the imperative of robust assessment and, in the case of knowledge gaps, employing a precautionary principle favouring lower-range tipping point values.
Continue reading ‘Considerations for determining warm-water coral reef tipping points’Short-term negative effects of seawater acidification on the rhodolith holobionts metatranscriptome
Published 7 February 2025 Science ClosedTags: algae, biological response, BRcommunity, community composition, laboratory, molecular biology, otherprocess, prokaryotes, South Atlantic
Highlights
- Cyanobacteria dominate the microbial community in living rhodoliths.
- Vibrionales dominate dead rhodolith skeletons.
- Short-term (1 h) acidification affects the microbial community structure.
- Diverse functional genes modulate microbe-host interactions.
Abstract
Rhodolith holobionts are formed by calcareous coralline algae (e.g., Corallinales) and associated microbiomes. The largest rhodolith bank in the South Atlantic is located in the Abrolhos Bank, in southwestern Brazil, covering an area of 22,000 km2. Rhodoliths serve as nurseries for marine life. However, ocean acidification threatens them with extinction. The acute effects of high pCO₂ levels on rhodolith metatranscriptomes remain unknown. This study investigates the transcriptomic profiles of rhodoliths exposed to short-term (96-h) high pCO₂ levels (up to 1638 ppm). Metatranscriptomes were generated for both dead and alive rhodoliths (15.48 million Illumina reads in total). Alive rhodoliths showed an enrichment of gene transcripts related to environmental stress responses and photosynthesis (Cyanobacteria). In contrast, the metatranscriptomes of dead rhodoliths were dominated by heterotrophic (Proteobacteria and Bacteroidetes) metabolism and virulence factors. The rhodolith holobiont metatranscriptomes respond rapidly to short-term acidification (within 1 h), suggesting that these holobionts may have some capacity to cope with acute acidification effects. However, the negative impacts of prolonged ocean acidification on rhodolith health cannot be overlooked. Rhodoliths exposed to low pH (7.5) for 96 h exhibited a completely altered transcriptomic profile compared to controls. This study highlights the plasticity of rhodolith transcriptomes in the face of ocean acidification and climate change.
Continue reading ‘Short-term negative effects of seawater acidification on the rhodolith holobionts metatranscriptome’Conspecific interactions between corals mediate the effect of submarine groundwater discharge on coral physiology
Published 30 January 2025 Science ClosedTags: biological response, BRcommunity, chemistry, corals, field, photosynthesis, physiology, respiration, South Pacific
Land-based inputs, such as runoff, rivers, and submarine groundwater, can alter biologic processes on coral reefs. While the abiotic factors associated with land-based inputs have strong effects on corals, corals are also affected by biotic interactions, including other neighboring corals. The biologic responses of corals to changing environmental conditions and their neighbors are likely interactive; however, few studies address both biotic and abiotic interactions in concert. In a manipulative field experiment, we tested how the natural environmental gradient created by submarine groundwater discharge (SGD) affected holobiont and symbiont metabolic rates and endosymbiont physiology of Porites rus. We further tested how the effect of SGD on the coral was mediated by intra and interspecific interactions. SGD is a natural land-sea connection that delivers nutrients, inorganic carbon, and other solutes to coastal ecosystems worldwide. Our results show that a natural gradient of nutrient enrichment and pH variability as a result of acute SGD exposure generally benefited P. rus, increasing gross photosynthesis, respiration, endosymbiont densities, and chlorophyll a content. Conspecifics in direct contact with the a neighboring coral, however, altered the relationship between coral physiology and SGD, lowering the photosynthetic and respiration rates from expected values when the coral had no neighbor. We show that the response of corals to environmental change is dependent on the types of nearby neighbor corals and how neighbors alter the chemical or physical environment around the coral. Our study underscores the importance of considering biotic interactions when predicting the physiologic responses of corals to the environment.
Continue reading ‘Conspecific interactions between corals mediate the effect of submarine groundwater discharge on coral physiology’Investigating the effects of environmental stress on coastal zooplankton populations: from mechanistic drivers to trophic impacts
Published 29 January 2025 Science ClosedTags: abundance, biological response, BRcommunity, crustaceans, field, laboratory, mortality, multiple factors, otherprocess, oxygen, performance, zooplankton
Environmental stressors, such as hypoxia and acidification, are increasing in intensity, duration, and extent in coastal waters and estuaries. Environmental stressors are known to affect a wide range of marine species, including zooplankton. Zooplankton are a critical link in marine food webs, connecting phytoplankton to higher trophic levels such as economically important fish, and are thought to be informative indicators of ecosystem change. For this reason, increased attention has been paid to understanding the mechanisms shaping zooplankton populations. Previous studies have shown that zooplankton exhibit both lethal and sublethal responses to changes in dissolved oxygen and pH. However, there is a range of species-specific responses to stressors. Different responses across species alter zooplankton community composition and spatial distributions, directly impacting predator-prey interactions and the trophic dynamics in coastal environments. This dissertation integrates laboratory experiments, in situ observations, and field work to understand how environmental stressors affect coastal zooplankton populations and nearshore food webs. In Chapter 1, I conducted laboratory experiments to investigate whether the copepod, Calanus pacificus, showed behavioral responses to stressors, and whether these responses lead to changes in vertical population distributions. Our laboratory experiments demonstrated significant effects of bottom water hypoxia and acidification on behavioral avoidance, swimming statistics, and apparent mortality rates in C. pacificus. In Chapter 2, I used a remote camera system to quantify in situ behavioral responses of zooplankton to stressors, using results from Chapter 1 to generate hypotheses about observations in the field. Our in situ videos revealed that copepods in stressful conditions exhibited significantly slower swimming speeds than copepods in non-stressful conditions, while amphipods showed significantly decreased abundances within stressful conditions. Finally, in Chapter 3, I collected zooplankton net tows in an intertidal estuary to investigate the transport of pelagic species into eelgrass beds and the role of eelgrass beds as potential sinks of pelagic zooplankton over the tidal cycle, potentially due to predation by juvenile fish. We found evidence of transport of pelagic species into intertidal habitats and measured large spatial and temporal variability, highlighting the need for sampling programs that can capture small-scale variability. This dissertation provides insight into the mechanisms that link the effects of environmental stressors across individual responses to population, community, and ecosystem level scales and suggests novel methodologies to help advance our understanding of changing zooplankton dynamics.
Continue reading ‘Investigating the effects of environmental stress on coastal zooplankton populations: from mechanistic drivers to trophic impacts’Seagrass influence on mitigating ocean acidification and warming impacts on tropical calcifying macroalgae
Published 28 January 2025 Science ClosedTags: algae, biological response, BRcommunity, laboratory, mesocosms, mitigation, multiple factors, phanerogams, temperature
Highlights
- OA and warming reduce calcium carbonate for marine calcifiers.
- Seagrass can capture excess carbon, possibly mitigating OA effects.
- 12-week study tested algae with/without seagrass under increasing stress.
- M. rosea was affected by OA and warming; H. opuntia by temperature alone.
- Mesophyllum sp. was resilient, and seagrass did not reduce OA impacts.
- Light, flow, combining OA and warming, likely to impact coralline algae
Abstract
Ocean acidification (OA) and warming pose significant threats to marine ecosystems, particularly by reducing calcium carbonate availability for marine calcifiers. Given that seagrasses can capture and store excess carbon, this study aimed to investigate whether seagrasses can mitigate the impacts of OA and elevated temperatures on three calcifying macroalgae: Mastophora rosea, Halimeda opuntia, and Mesophyllum sp. A 12-week mesocosm experiment was conducted, where the algae were cultured with and without seagrass under gradually increasing stress conditions: ambient conditions, OA alone for four weeks, OA combined with elevated (but non-stressful) temperatures (28°C) for four weeks, and OA plus a stress-inducing temperature (31°C) for two weeks. Results indicated that OA and warming negatively affected M. rosea, while H. opuntia was more strongly impacted by temperature alone. Mesophyllum sp. exhibited resilience to both OA and elevated temperatures. Contrary to expectations, the presence of seagrass did not mitigate the negative effects of OA and warming on these calcifying macroalgae species.
Continue reading ‘Seagrass influence on mitigating ocean acidification and warming impacts on tropical calcifying macroalgae’The response mechanisms of kelp Macrocystis pyrifera holobiont to elevated temperature and CO2 concentration
Published 17 January 2025 Science ClosedTags: algae, biological response, BRcommunity, community composition, laboratory, multiple factors, otherprocess, physiology, prokaryotes, temperature
The kelp Macrocystis pyrifera, a crucial component of marine ecosystems, is significantly impacted by climate change and environmental stresses. Macrocystis pyrifera and its associated bacteria form a holistic functional unit (holobiont), yet the regulatory roles of bacteria in stress responses and acclimation are often overlooked. This study investigates the diversity of M. pyrifera associated bacteria and their chemical interactions under high temperature and elevated CO2 conditions. Our findings indicate that high temperatures significantly reduce associated bacterial diversity, while elevated CO2 does not alter community structure. Key microbial biomarkers identified include Pseudomonas, Sulfitobacter, and Olleya. However, it is unknown how they function in M. pyrifera. In metabolite analysis, we identified 18 metabolites with significant differences. These metabolites included phospholipids, antibacterial compounds, signaling molecules, and various compounds of unclear function. The changes in these compounds are probably connected to how M. pyrifera respond to climate change. These results will enrich the baseline data related to the chemical interactions between the microbiota and M. pyrifera and provide clues for predicting the resilience of M. pyrifera to future climate change.
Continue reading ‘The response mechanisms of kelp Macrocystis pyrifera holobiont to elevated temperature and CO2 concentration’Impacts of climate change on members of shallow water Antarctic communities
Published 16 January 2025 Science ClosedTags: algae, Antarctic, biological response, BRcommunity, community composition, crustaceans, laboratory, mortality, otherprocess, performance, physiology
Human-derived CO2 emissions have lowered the ocean’s pH and increased global temperatures. Low seawater pH can decrease the calcification, growth, and survival of calcifying invertebrates. Furthermore, low pH changes macroalgal growth and stress, possibly altering palatability to consumers. Global warming has decreased sea ice coverage, profoundly influencing photosynthetic organisms by altering subsurface irradiance. Shallow, hard-bottom communities along the Western Antarctic Peninsula are characterized by large macroalgal forests that shelter large numbers of mesograzers. Amphipods and macroalgae have a community-wide mutualistic relationship where macroalgae provide refuge from predatory fish while amphipods remove competing epiphytes. To understand how climate change could impact members of this relationship, macroalgal-associated mesograzers were collected near Palmer Station, Antarctica (64°46′S, 64°03′W) and maintained under three different pH treatments [ambient (pH 8.1), near-future (pH 7.7), and distant-future conditions (pH 7.3)] for 52 days. Total assemblage number and the relative proportion of each species were similar across the treatments, indicating possible resistance to short-term low pH exposure. The amphipods Djberboa furcipes, Gondogeneia antarctica, and Prostebbingia gracilis were maintained under the pH treatments for 8 weeks. No difference in biochemical composition or survival was found between the treatments for any of the species. However, each species decreased molt activity between the ambient and pH 7.3 treatment. These results suggest that amphipods may maintain their survival in decreased pH by reallocating energy into compensatory behaviors and away from energy-expensive processes like molting. The palatability of the unpalatable Desmarestia menziesii and the palatable Palmaria decipiens were maintained under three pH treatments and then presented to the amphipod Gondogeneia antarctica in a feeding choice assay. Decreased seawater pH generally lowered the consumption of both species, suggesting that acidification may decrease the palatability of these macroalgae to consumers. Finally, biochemical composition, carbon and nitrogen percentages, and C:N were correlated with sea ice indices for the macroalgae D. menziesii, Himantothallus grandifolius, Sarcopeltis antarctica, and Iridaea sp. from a sea ice gradient. Surprisingly, most of the chemical components were not correlated with sea ice cover, indicating sea ice coverage does not change the nutritional contributions of macroalgae to food webs.
Continue reading ‘Impacts of climate change on members of shallow water Antarctic communities’
