Posts Tagged 'prokaryotes'



Resource homogenisation drives niche convergence between generalists and specialists in a future ocean

Highlights

  • Do marine herbivores adjust their trophic niches under climate change?.
  • Specialist and generalist herbivore niches and their food were tested using stable isotopes.
  • Food resources were dominated by turf algae and SOM under climate change.
  • Niche breath of generalists narrowed under climate stress but widened in specialists.
  • Generalists and specialists appear to converge their trophic niches under climate change.

Abstract

When humans drive rapid environmental change, is it favourable to be a generalist or specialist? To address this question, we compare how specialist and generalist marine herbivores adjust their isotopic niches (used as proxy for trophic niche) in response to predicted resource alterations under the simulated effects of ocean warming and acidification (based on a 6-month mesocosm experiment). Here, we show that when exposed to multiple climate stressors, food resources homogenized towards dominance of turf algae and suspended organic matter, with generalists and specialists adjusting their trophic niches in opposing ways. Whilst the niche breath of most generalists narrowed under climate stressors, those of specialists generally broadened, causing increasing overlap between their niches. The magnitude of this change was such that some generalists turned into specialists, and vice versa. Under ocean acidification, there was a greater probability of generalists increasing and specialists maintaining their biomass, respectively, but under warming the biomass of both specialists and generalists had a greater probability of collapse. For specialists, this collapse occurred even though they had adequate thermal tolerance and the capacity to expand their trophic niche. Climate change constrains or liberates resources, but where they are homogenized, generalists and specialists are likely to converge their trophic niches so they can exploit transforming environments for their survival or adaptive advantage.

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The important role of the antioxidant stress capacity in the response of Prochlorococcus to increased CO2 under varying iron and light conditions

Highlights

  • Low-light-adapted Prochlorococcus ecotypes have stronger low-iron adaptation capacity
  • Fe limitation in Prochlorococcus is enhanced under both low growth-limiting light and high photo-inhibitory light
  • High CO2 promotes the growth of low-light-adapted Prochlorococcus ecotypes due to a reduction in cellular oxidation stress

Abstract

Ocean acidification caused by the ongoing increase in atmospheric carbon dioxide (CO2) is expected to impact the growth of marine phytoplankton. Additionally, CO2-driven climate change influences light intensity and iron (Fe) availability in surface seawaters, two critical factors for marine phytoplankton carbon fixation and growth due to their central role in regulating photosynthesis. The cyanobacterium Prochlorococcus often dominates marine productivity in oligotrophic oceans with low but variable Fe concentrations and light intensities. However, the combined effects of light intensity, Fe availability and CO2 concentration on the growth and photosynthesis of Prochlorococcus remain unclear. In this study, we found that the high-light-adapted Prochlorococcus strain MED4, isolated from shallower depths, required much higher Fe concentrations and light intensities to grow than the low-light-adapted strain NATL1A, isolated from deeper depths. Increased CO2 had no effect on the growth of strain MED4 under any light or Fe conditions. In contrast, increased CO2 caused a 29% increase in the growth of strain NATL1A under low Fe coupled with high photo-inhibitory light condition, owing to a reduction in cellular oxidative stress. The varying antioxidant stress capacities of different Prochlorococcus strains appeared to influence their responses to increased CO2. These results indicate complex interactions among light intensity, Fe limitation, and CO2 concentration, which may affect the species distributions and productivities of marine phytoplankton, including Prochlorococcus, in a future high-CO2 ocean.

Continue reading ‘The important role of the antioxidant stress capacity in the response of Prochlorococcus to increased CO2 under varying iron and light conditions’

Seawater warming rather than acidification profoundly affects coastal geochemical cycling mediated by marine microbiome

Highlights

  • The structure and function of coastal microbial communities are influenced by ocean warming and acidification.
  • Elevated temperature more profoundly impacts microbial communities than does acidification.
  • Warming promotes denitrification that may increase nitrogen loss.
  • The nitrogen, sulfur cycles, and carbon-fixation pathways exhibit distinct variation patterns under warming.

Abstract

The most concerning consequences of climate change include ocean acidification and warming, which can affect microbial communities and thus the biogeochemical cycling they mediate. Therefore, it is urgent to study the impact of ocean acidification and warming on microbial communities. In the current study, metagenomics was utilized to reveal how the structure and function of marine microorganisms respond to ocean warming and acidification. In terms of community structure, Non-metric Multidimensional Scaling analysis visualized the similarity or difference between the control and the warming or acidification treatments, but the inter-group differences were not significant. In terms of gene functionality, warming treatments showed greater effects on microbial communities than acidification. After treatment with warming, the relative abundance of genes associated with denitrification increased, suggesting that ocean nitrogen loss can increase with increased temperature. Conversely, acidification treatments apparently inhibited denitrification. Warming treatment also greatly affected sulfur-related microorganisms, increasing the relative abundance of certain sulfate-reducing prokaryote, and enriched microbial carbon-fixation pathways. These results provide information on the response strategies of coastal microorganisms in the changing marine environments.

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Chemical interactions between kelp Macrocystis pyrifera and symbiotic bacteria under elevated CO2 condition

Kelps are pivotal to temperate coastal ecosystems, providing essential habitat and nutrients for diverse marine life, and significantly enhancing local biodiversity. The impacts of elevated CO2 levels on kelps may induce far-reaching effects throughout the marine food web, with potential consequences for biodiversity and ecosystem functions. This study considers the kelp Macrocystis pyrifera and its symbiotic microorganisms as a holistic functional unit (holobiont) to examine their collective response to heightened CO2 levels. Over a 4 month cultivation from the fertilization of M. pyrifera gametes to the development of juvenile sporophytes, our findings reveal that elevated CO2 levels influence the structure of the M. pyrifera symbiotic microbiome, alter metabolic profiles, and reshape microbe-metabolite interactions using 16S rRNA amplicon sequencing and liquid chromatography coupled to mass spectrometry analysis. Notably, DinoroseobacterSulfitobacterMethyloteneraHyphomonas, Milano-WF1B-44 and Methylophaga were selected as microbiome biomarkers, which showed significant increases in comparative abundance with elevated CO2 levels. Stress-response molecules including fatty-acid metabolites, oxylipins, and hormone-like compounds such as methyl jasmonate and prostaglandin F2a emerged as critical metabolomic indicators. We propose that elevated CO2 puts certain stress on the M. pyrifera holobiont, prompting the release of these stress-response molecules. Moreover, these molecules may aid the kelp’s adaptation by modulating the microbial community structure, particularly influencing potential pathogenic bacteria, to cope with environmental change. These results will enrich the baseline data related to the chemical interactions between the microbiota and M. pyrifera and provide clues for predicting the resilience of kelps to future climate change.

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Effects of CO2 on the nitrogen isotopic composition of marine diazotrophic cyanobacteria


Biological N2 fixation has been crucial for sustaining early life on Earth. Very negative δ15N values detected in Archean sediments, which are not observed in present-day environments, have been attributed to the low efficiency of proto-nitrogenases. Alternatively, variations in early atmospheric CO2 may also play a role. Here we examine the effects of CO2 concentrations on the biomass δ15N signatures of the diazotrophs Trichodesmium erythraeum and Crocosphaera watsonii, which utilize Mo-Fe nitrogenase (the most common form of the enzyme). Our results show that these organisms produce biomass with δ15N values up to ∼3‰ lower under both decreased and elevated CO2 concentrations compared to modern levels (∼380 μatm). These deviations from modern CO2 levels reduce nitrogenase enzyme efficiency, leading to increased organismal isotopic fractionation during N2 fixation. This study offers an alternative explanation for the observed fluctuations in geological δ15N records and provides new insights into the past nitrogen cycle on Earth.

Key Points

  • The effects of CO2 on the biomass δ15N signatures of the diazotrophs Trichodesmium erythraeum and Crocosphaera watsonii are examined
  • Both species produce biomass with δ15N values lower under both decreased and elevated CO2 concentrations compared to modern CO2 levels
  • CO2-controlled nitrogenase efficiency significantly influences organismal isotopic fractionation during N2 fixation

Plain Language Summary

The isotope effect of biological N2 fixation is crucial for understanding the nitrogen cycle, but its regulation under different atmospheric CO2 levels as appeared in Earth’s history is not well understood. Our research shows that CO2 levels significantly influence the nitrogen isotope composition in the biomass of the diazotrophic cyanobacteria Trichodesmium and Crocosphaera by affecting the nitrogenase efficiency and thus the growth rate. This study sheds light on the geological changes in the δ15N records and provides new insights into the historical nitrogen cycle on Earth.

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Combined effects of low pH stress and bacterial infection on the transcriptional changes of hemocytes in Chinese mitten crab Eriocheir sinensis

Highlights

  • Low pH stress might disturb the maintaining of protein homeostasis in hemocytes.
  • Combination of low pH stress and bacterial infection cause disruption of TLR pathway.
  • Low pH stress and bacterial infection inhibit the TCA cycle in hemocytes.

Abstract

Water pH is a critical environmental factor for aquaculture. Acidification is a pressing environmental issue that poses significant threats to the aquaculture industry. Since the outbreaks of disease generally accompany with environmental stress, comparative transcriptome analyses were performed to investigate the combined effects of low pH stress and bacterial infection on the transcriptional changes of hemocytes in the economically important crab Eriocheir sinensis. The results revealed that the immune deficiency (IMD) pathway and prophenoloxidase (proPO) system was activated to defense against Vibro parahaemolyticus even when crabs were subjected to low pH stress, whereas low pH stress resulted in the disorder of Toll-like receptor (TLR) pathway upon Vparahaemolyticus infection. Moreover, low pH stress might weaken crabs′ defense against Vparahaemolyticus by inhibiting the up-regulation of crustin and suppressing the expression of lysozyme, and disturb the maintaining of protein homeostasis through the transcriptional decrement of a batch of heat shock proteins (HSPs). It is worth noting that both Vparahaemolyticus infection and low pH stress might suppress the energy metabolism in the hemocytes via inhibiting the expression of critical enzymes, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex and fumarase, in the tricarboxylic acid (TCA) cycle. This study provides novel understandings concerning the transcriptional changes of hemocyte in Esinensis subjected to a combination of low pH stress and Vparahaemolyticus infection as well as contribute to optimize the management strategies for the prevention and control of diseases in Esinensis farming.

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Chapter 5 – Impacts of ocean acidification on the immunity and host–microbe interactions in marine mollusks

Along with human activities, an overwhelming amount of carbon dioxide (CO2) has been released into the atmosphere and subsequently absorbed by the ocean through the air–sea interface, leading to a significant decrease in oceanic pH, known as global ocean acidification (OA). Over time, the continued pH decrease, together with a major change in the carbonate system, has created serious risks for a wide range of marine organisms and the ecosystem, and therefore the near-future OA scenario is increasingly and intensively emphasized. As the ecologically dominant species in various oceanic environments such as estuaries and the coral reef, marine mollusks are at great risk due to the altered innate immune response under the near-future OA condition. Furthermore, because infectious disease in marine mollusks is the result of the joint action of host and pathogenic microbes, the impacts of the OA on the host, microbes, and their interactions may also affect the immune response of marine mollusks. In addition, other environmental stressors, such as high temperature, hypoxia, and pollutants, may exert combined impacts of OA on the immunity of marine mollusks. Thus, this chapter focuses on the following fields: (1) the impacts of OA on the cellular and humoral immune response of marine mollusks; (2) the potential affecting mechanisms of OA on the immunity of marine mollusks; (3) the host–microbe interactions in marine mollusks under OA scenario; and (4) the combined effects of OA and other environmental stressors on the immunity of marine mollusks.

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Impact of low pH/high pCO2 on the physiological response and exopolysaccharide content in cyanobacteria Trichodesmium erythraeum

The acidification of the ocean caused by the diffusion of anthropogenic carbon dioxide (CO2) into seawater has been believed to threaten the stability of the marine ecosystem. As one of the major contributors to the primary production in oligotrophic oceans, the response of Trichodesmium to the acidification of the ocean has attracted a lot of attention. Therefore, in this study, we applied physiological and biochemical methods to identify the influences of high pCO2 and low pH conditions on the growth of T. erythraeum. Our results showed that the low pH during the acidification of the ocean was the main factor inhibiting the growth of T. erythraeum. In addition, low pH caused oxidative stress to T. erythraeum, as evidenced by the increase of the reactive oxygen species and antioxidant enzyme’s activities. The activity of carbonic anhydrase (CA) enzyme is dually regulated by pCO2 and pH, and T. erythraeum can adapt to different levels of pCO2 and pH in seawater by flexibly adjusting CA enzyme activity. We also discovered that the stimulatory effect of high pCO2 on the exopolysaccharide (EPS) content of T. erythraeum outweighed the inhibitory effect of low pH during the process of ocean acidification. In conclusion, this study systematically revealed the effects of high pCO2 and low pH caused by the acidification of the ocean on the growth and EPS of T. erythraeum. These results provide new insights into the response mechanisms of T. erythraeum in the acidified ocean under future climate conditions.

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Lactiplantibacillus plantarum I induces gonad growth in the queen scallop Aequipecten opercularis (Linnaeus, 1758) under conditions of climate change

Climate change has presented a serious problem in recent times, which is why a new approach is being sought in terms of aquacultural food quality. In this study, the influence of temperature increase (by 2 °C) and pH decrease (by 0.2) was investigated on the queen scallop, Aequipecten opercularis (Linnaeus, 1758). Furthermore, the effect of a food-enriched diet with the probiotic culture Lactiplantibacillus plantarum I was assessed in climate-changed conditions. Scallops’ morphometric parameters were measured before the experimental setup and after one month of being kept in controlled conditions. Morphometric parameters included the elongation index, compactness index, convexity index, density index, condition index, meat yield, gonadosomatic index, adductor muscle index, and hepatosomatic index. Climate-changed conditions had no effect on the scallop condition index, meat yield, or hepatosomatic index. Nevertheless, the addition of probiotics to their diet had a positive effect on the queen scallops cultivated under conditions of climate change, influencing positive allometry and the increase of the gonadosomatic indices. On the other hand, the same conditions negatively affected the adductor muscle index of the scallops. To conclude, in the context of climate change conditions, queen scallops could be a good organism of choice that can be very well adapted to the changed environmental conditions, especially with the addition of the lactic acid bacteria culture Lpb. plantarum I.

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Nearshore microbial communities of the Pacific Northwest coasts of Canada and the U.S.

A survey of marine pelagic coastal microbial communities was conducted over a large geographic latitude range, from Cape Mendocino in northern California USA to Queen Charlotte Sound in British Columbia Canada, during the spring to summer transition. DNA metabarcoding and flow cytometry were used to characterize microbial communities. Physical and chemical oceanography indicated moderate conditions during the survey with no widespread upwelling, marine heat wave, or other extreme conditions. However, four locations displayed features approaching acidified conditions: Heceta Head, Newport, Copalis Beach, and Cape Flattery. Although bacterial and archaeal communities at the Juan de Fuca canyon and northward had high similarity, those south of the Juan de Fuca canyon were well differentiated from each other. In contrast, eukaryotic microbial communities exhibited stronger geographic differentiation than bacterial and archaeal communities across the extent of the survey. Seawater parameters that were best predictors of bacterial and archaeal community structure were temperature, pH, and dissolved inorganic nutrients (nitrate, phosphate, silicate), while those that were best predictors of eukaryotic microbial community structure were salinity, dissolved oxygen, total alkalinity, and dissolved inorganic nutrients (nitrite, silicate). Although five bacterial and archaeal indicators for potentially corrosive waters were identified (ColwelliaNitrosopumilusNitrosopelagicusSup05 cluster, Sva0996 marine group), no eukaryotic microbial indicators were found. Potentially pathogenic taxa detected in the survey included four disease-causing bacteria for mammals, finfish, and/or shellfish (CoxiellaFlavobacteriumFrancisellaTenacibaculum), sixteen genera of microalgae capable of producing biotoxins, and fifteen parasitic species. This study demonstrates the value of coordinating microbial sampling and analysis with broad-scale oceanographic surveys to generate insights into community structures of these important pelagic trophic levels.

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Low pH enhances germination of eelgrass (Zostera marina L.) seeds despite ubiquitous presence of Phytophthora gemini

Highlights

  • Lowered pH levels positively influence eelgrass seed germination, indicating a potential adaptive response to ocean acidification.
  • Despite favorable germination conditions, the virulence of Phytophthora gemini remains unaffected, leading to widespread infection in eelgrass populations regardless of pH levels.
  • The study shows the persistent threat of Phytophthora gemini to eelgrass restoration efforts, emphasizing the need for innovative disease management strategies alongside considerations of ocean acidification impacts on coastal ecosystems.

Abstract

Seagrasses are foundation species in coastal ecosystems promoting biodiversity and community structure. Future marine carbonate chemistry under ocean acidification may enhance seagrass physiology, but little is known about how reproductive ecology and disease will integrate into future ocean conditions. A novel pathogen, Phytophthora gemini, infects >90% of eelgrass, Zostera marina, surveyed in Northern Atlantic and Mediterranean populations reducing annual germination 6-fold. Our study investigated the combined effects of ocean acidification and P. gemini infection on germination of eelgrass seeds. We conducted a two-level factorial experiment crossing four pH levels (∆0, – ∆0.3, – ∆0.6, -∆0.9; relative to the average pH at the sampling site) with three infection levels (infected, non-infected, exposed) to determine germination rate and infection response. Prior to experimentation, flowering shoots were collected and held in flow-through seawater tanks where seeds ripened naturally. Once collected, seeds were held in copper sulfate solution (27.37 ± 1.57 ppt) and stored in darkness to mimic winter dormancy (4 oC). Before the start of the experiment, viable seeds were cultured on oomycete selective growth media to determine infection status. By the end of the experiment, 100% of tested seeds, regardless of treatment, contained P. gemini. Germination rate significantly increased with decreased pH. Our findings indicate that P. gemini is not inhibited by ecologically relevant changes to carbonate chemistry and standard handling practices can result in effective and highly virulent disease transmission. These results confirm perennial populations of eelgrass are susceptible to infection and alerts conservationists to additional considerations necessary for successful eelgrass restoration.

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Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding

Ocean acidification and warming threaten marine life, yet the impact of these processes on microbes remains unclear. Here, we performed basin-scale DNA metabarcoding of prokaryotes (16S V4–V5) and protists (18S V9) in the Gulf of Mexico and applied generalized linear models to reveal group-specific environmental correlates of functionally diverse microbes. Models supported prior physiological trends for some groups, like positive temperature effects on SAR11 and SAR86, and a positive effect of pH on Prochlorococcus that implied a negative response to decreasing pH. New insights were revealed for protists, like Syndiniales and Sagenista (e.g., positive pH effects), which offset positive relationships with temperature and reinforced the importance of considering multiple stressors simultaneously. Indicator analysis revealed phytoplankton, like Ostreococcus sp. and Emiliania huxleyi, that were associated with more acidic waters and may reflect candidate indicators of ocean change. Our findings highlight the need for sustained microbial sampling in marine systems, with implications for carbon export, nutrient cycling, and ecosystem health.

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Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios

Mangroves are coastal environments that provide resources for adjacent ecosystems due to their high productivity, organic matter decomposition, and carbon cycling by microbial communities in sediments. Since the industrial revolution, the increase of Greenhouse Gases (GHG) released due to fossil fuel burning led to many environmental abnormalities such as an increase in average temperature and ocean acidification. Based on the hypothesis that climate change modifies the microbial diversity associated with decaying organic matter in mangrove sediments, this study aimed to evaluate the microbial diversity under simulated climate change conditions during the litter decomposition process and the emission of GHG. Thus, microcosms containing organic matter from the three main plant species found in mangroves throughout the State of São Paulo, Brazil (Rhizophora mangleLaguncularia racemosa, and Avicennia schaueriana) were incubated simulating climate changes (increase in temperature and pH). The decay rate was higher in the first seven days of incubation, but the differences between the simulated treatments were minor. GHG fluxes were higher in the first ten days and higher in samples under increased temperature. The variation in time resulted in substantial impacts on α-diversity and community composition, initially with a greater abundance of Gammaproteobacteria for all plant species despite the climate conditions variations. The PCoA analysis reveals the chronological sequence in β-diversity, indicating the increase of Deltaproteobacteria at the end of the process. The GHG emission varied in function of the organic matter source with an increase due to the elevated temperature, concurrent with the rise in the Deltaproteobacteria population. Thus, these results indicate that under the expected climate change scenario for the end of the century, the decomposition rate and GHG emissions will be potentially higher, leading to a harmful feedback loop of GHG production. This process can happen independently of an impact on the bacterial community structure due to these changes.

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Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta

The intestinal microflora of host, vital for nutrient absorption and immune regulation, can experience dysbiosis under environmental stress, thereby potentially enhancing host susceptibility to pathogenic invasion.  The impact of ocean acidification on bivalves is substantial, yet its effects on the intestinal microflora remain poorly understood. This study employed high-throughput 16S rRNA sequencing technology to investigate the variations in the intestinal microflora of Sinonovacula constricta between the control group (CON) and the seawater acidification group (OA) at different time points.After exposure to OA, changes in the composition of the intestinal microflora of S. constricta were observed, with no significant difference in α-diversity between the acidified and control groups. At the phylum level, there was an increase in the abundance of Proteobacteria, while Cyanobacteria decreased in the OA14d and OA35d groups. Additionally, the relative abundance of Firmicutes increased in the OA7d and OA35d groups. At the genus level, the relative content of Pseudomonas was lower than that in the control group, while the relative content of Flavobacterium, Acinetobacter, and Enterobacter showed a gradual increasing trendin the OA14d and OA35d groups.. LEfSe analysis identified Serpens as   discriminative biomarkers in the OA7d group, while Enterobacteriales, Rhodobacteraceae and Martvita were biomarker in the OA14d group, and Serpens, Acidibacteria and Aeromonadaceae were biomarker in the OA35d group. Functional prediction results indicated significant enrichment in metabolic pathways at different time points following ocean acidification stress… The pathways involved in biosynthesis in the OA14d group and in sucrose degradation in the OA35d group were significantly disrupted. These results suggest that OA stress can have adverse effects on the intestinal microflora of S. constricta, but it does not cause obvious damage to the digestive system. This study provides new insights into the intestinal microflora of marine bivalves under acidification stress.

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Uptake of dissolved inorganic nitrogen and N2 fixation by Crocosphaera watsonii under climate change scenarios

The response of N2 fixation to projected future conditions in the ocean cannot be reliably predicted to date. We conducted a minicosm experiment with pre-acclimated cultures of the globally significant diazotroph Crocosphaera watsonii strain WH8501 (“Crocosphaera”). PH and temperature were altered simultaneously to match the RCP scenarios 4.5 and 6 and investigate a more realistic future scenario compared to studies that focus on changes of a single stressor only. The cell abundance and nitrogen metabolism of Crocosphaera was monitored over 5 days. Our results imply that Crocosphaera is able to simultaneously perform N2 fixation and assimilate dissolved inorganic nitrogen (DIN, i.e., nitrate and ammonium) under all the conditions tested and implies a competition with non-diazotrophic phytoplankton for DIN, which should be further investigated. Using NanoSIMS analysis of single cells, our results point towards a preference for DIN assimilation over N2 fixation under more acidic and warmer conditions. Overall, our results show that while the combined alteration of pH and temperature had a negative effect on the diazotroph’s growth and N2 fixation, Crocosphaera is likely to cope well with conditions in the future ocean. The high intra-population variability in nitrogen assimilation pathways may give this species the flexibility to quickly react to environmental changes.

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Marine Roseobacter clade bacteria decelerate the conversion of dimethylsulfoniopropionate under ocean acidification

Ocean acidification has been an alarming issue that is jeopardizing the marine environment and ecology. Marine Roseobacter clade bacteria mediate important biogeochemical cycles in the ocean and are an indispensable sector of marine ecology. However, seldom has research attempted to unveil the effects of ocean acidification on bacteria in the Roseobacter clade, leaving a gap in understanding the environmental and ecological impacts of global climate change and ocean acidification. Here, we evaluated the effects of acidification on Roseovarius nubinhibens, a representative strain in the marine Roseobacter clade. We found that a marginal decrease in pH was influential enough to inhibit cell growth and induce cellular responses at the system level. We determined the essential role of glutathione metabolism in response to a lower pH via combined RNA sequencing, biochemical analysis, and CRISPR-Cas genome editing. Finally, we observed that a lower pH decelerated the metabolism of dimethylsulfoniopropionate, a key precursor for the global sulfur cycle and the formation of clouds, which would probably hasten global climate changes. Taking together, we believe that our study provides a missing puzzle piece toward a comprehensive understanding of the effects of global climate change and ocean acidification on our planet.

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Response and acclimation of cyanobacteria to acidification: a comprehensive review

Highlights

  • Examining the effects of acidification on both ecosystems and cyanobacteria
  • Understanding cyanobacteria’s acclimation mechanisms and responses to acidification stress
  • Strategies to enhance acid resistance in cyanobacteria and future research directions

Abstract

Cyanobacteria, as vital components of aquatic ecosystems, face increasing challenges due to acidification driven by various anthropogenic and natural factors. Understanding how cyanobacteria adapt and respond to acidification is crucial for predicting their ecological dynamics and potential impacts on ecosystem health. This comprehensive review synthesizes current knowledge on the acclimation mechanisms and responses of cyanobacteria to acidification stress. Detailly, ecological roles of cyanobacteria were firstly briefly concluded, followed by the effects of acidification on aquatic ecosystems and cyanobacteria. Then the review focuses on the physiological, biochemical, and molecular strategies employed by cyanobacteria to cope with acidification stress, highlighting key adaptive mechanisms and their ecological implications. Finally, a summary of strategies to enhance acid resistance in cyanobacteria and future directions was discussed. Utilizing omics data and machine learning technology to build a cyanobacterial acid regulatory network allows for predicting the impact of acidification on cyanobacteria and inferring its broader effects on ecosystems. Additionally, acquiring acid-tolerant chassis cells of cyanobacteria through innovative techniques facilitates the advancement of environmentally friendly production of acidic chemicals. By synthesizing empirical evidence and theoretical frameworks, this review aims to elucidate the complex interplay between cyanobacteria and acidification stressors, providing insights for future research directions and ecosystem management strategies.

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Sulphate reduction and carbonate precipitation in a high-energy algal rim framework

Algal ridges are protective features for coral reefs that form through the accretion and encrustation of reef rubble and debris by crustose coralline algae (CCA) and processes of diagenetic cementation. Carbonate precipitation and dissolution dynamics on and within algal ridge frameworks are poorly understood. We studied the surface and subsurface geochemistry of the algal ridge framework at One Tree Island, Australia. Measurable quantities of hydrogen sulphide were detected in most porewater samples collected from bores, indicating a largely anoxic ridge framework. Total alkalinity (TA) and pH measurements indicate that the precipitation of carbonate minerals within the interior of the ridge framework occurs under largely anoxic conditions and is likely to be driven by TA changes associated with sulphate-reducing bacteria. Modelling of porewater hydrogen sulphide concentrations in combination with TA and dissolved inorganic carbon (DIC) indicates anoxic respiration processes produce alkalinity within the algal ridge framework. However, significantly more TA is removed via the precipitation of mineral carbonate, resulting in porewater TA concentrations falling below the open seawater values. The precipitation of mineral carbonate also lowers interstitial water pH, such that pH changes are not solely from organic carbon diagenesis. The simultaneous precipitation and dissolution of carbonate minerals within the algal ridge framework are key to forming and cementing algal ridges, which are important physical protective features for coral reefs.

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Molecular bases and evolutionary constraints of cellular acid tolerance in cyanobacteria and invertebrates subjected to ocean acidification and other sources of stress (METASTRESS)

The ongoing decreasing surface pH that seas and oceans are facing is termed ocean acidification (OA). The primary reason for this phenomenon is the emission of carbon dioxide (CO2) into the atmosphere from human activities, like the burning of fossil fuels, which has drastically increased since the industrial revolution, reaching higher levels during these decades. This environmental risk is considered among the most hazardous threats to marine ecosystems associated with global change and severely affects marine life worldwide. Responses of marine species to acidified seawaters have been deeply studied and adverse effects at different levels, from single species up to whole communities, have been pointed out. Although OA is clearly posing a threat to marine life, some species have demonstrated the ability to tolerate and thrive in such conditions. Information on the mechanisms driving the tolerance of adapted species to decrease seawater pH is limited, and new knowledge may be obtained from species inhabiting sites with naturally low pH, such as the volcanic CO2 system off the Castello Aragonese on the Ischia Island (Italy). Understanding the molecular mechanisms of adaptation enabling marine species to tolerate a lowered seawater pH could support predictions of the consequences of future OA scenarios for marine life. Growing evidence of the involvement of ABC transport proteins in resistance towards acid stress in bacteria and tumor cell lines has been demonstrated. Researchers have suggested that the tolerance to this kind of stress is due to the transport of substances that contribute to the maintenance of internal cell homeostasis carried out by the ABC proteins. Here, we aimed at elucidating the involvement of ABC transport proteins in tolerance to low-pH/high-pCO2 environments, by investigating their gene regulation, in species of marine microorganisms and metazoans considered tolerant to acidified environments. Halomicronema metazoicum is a marine filamentous cyanobacterium able to cope with hostile conditions and discovered in association with Posidonia oceanica leaves also in areas characterized by low pH. Mattes of this cyanobacterium were exposed in short- and long-term exposure experiments (7 and 30 d) to low seawater pH conditions (7.7, 7.2, 6.5), and the regulation of the ABC-like gene slr2019 was assessed. At day 7, slr2019 was up-regulated at pH 7.7 while no changes were observed at lower pH, compared to the controls (pH 8.2). However, after 30 d of exposure, a significant decrease in slr2019 transcript level was observed in all treatments. Furthermore, unchanged photosynthetic pigment content indicated that the species can tolerate all three lowered pH conditions. Platynereis dumerilii is a marine annelid extensively used as a model in genetics, single‐cell genomics, and ecotoxicology. It and its sibling, P. cfr massiliensis, were abundant in naturally acidified areas, such as the CO2 vents off Castello Aragonese. They are adapted to low-pH conditions, making them excellent models for studying acclimation and adaptation mechanisms to OA. Since its genome is completely sequenced, an attempt to identify ABC transport proteins in P. dumerilii has been made with the aim to investigate whether these proteins contribute to adaptation/tolerance to low-pH/high-pCO2 seawater conditions in the two sibling species P. dumerilii/cfr massiliensis before and after 30 d of in-situ transplant experiment. A total of 81 ABCs were found in P. dumerilii, belonging to seven distinct subfamilies (A–G) based on phylogenetic analysis. Furthermore, the distribution within the tissues of a subset of 40 ABC transport proteins from the subfamilies B, C and G was determined. Most of the analyzed ABCs were expressed in the annelid midgut but also found in the other organs and tissues: neurons, body epidermis and ectodermal cells, and somatic and visceral muscle. Based on these findings, we evaluated the expression profile of 7 genes belonging to the ABCB (ABCB_1, ABCB_2, ABCB_3), ABCC (ABCC_1, ABCC_2, ABCC_3) and ABCG (ABCG) subfamilies following a 30-d in-situ reciprocal transplant of specimens inhabiting normal-pH marine site (8.18 ± 0.005) and those living in naturally low-pH areas off Castello Aragonese (7.33 ± 0.312). Hypotheses on the involvement of each studied ABC gene in adaptation to low-pH were made based on the basal expression gene level of organisms inhabiting different pH environments and verified through the ABC transcription results of the in-situ transplant experiment. Three out of the 7 genes were confirmed to be involved in low-pH resistance. ABCB_1 and ABCG are up-regulated in worms living in low-pH sites compared to those from normal-pH areas while ABCB_3 were lower expressed. The results of transplant experiments supported these findings. ABCB_1 and ABCG gene expression increased in samples transplanted from normal-pH areas to acidified sites while decreased in the reverse transplant. On the contrary, ABCB_3 gene was down-regulated in organisms transferred from normal- to low-pH zones and was up-regulated in specimens subjected to the reverse transplantation. Taken together, our results demonstrate the capacity of the studied species to deal with low-pH environments and confirm previous findings on the involvement of ABC transporters in acid stress adaptation in marine organisms. These proteins were found to play a role in maintaining cellular homeostasis, buffering the internal cell pH and preventing cell death to guarantee the proper functioning of cellular activities. So, based on our findings, these functions may prevent negative effects following exposure to acidified conditions. This work will constitute a basis for further research on the physiological functions of ABCs behind the tolerance to low-pH/high-pCO2 environments to better understand how marine species can cope with OA and to provide vital information on the impact of climate change on marine biodiversity.

Continue reading ‘Molecular bases and evolutionary constraints of cellular acid tolerance in cyanobacteria and invertebrates subjected to ocean acidification and other sources of stress (METASTRESS)’

Ocean acidification alters microeukaryotic and bacterial food web interactions in a eutrophic subtropical mesocosm

Highlights

  • The communities were strongly affected by phytoplankton bloom stages.
  • Ocean acidification (OA) affected some taxa as the phytoplankton bloom stages progressed.
  • OA changed the co-occurrence network complexity and stability of microeukaryotes.
  • OA altered the proportions of potential interactions between phytoplankton and their predators.

Abstract

Ocean acidification (OA) is known to influence biological and ecological processes, mainly focusing on its impacts on single species, but little has been documented on how OA may alter plankton community interactions. Here, we conducted a mesocosm experiment with ambient (∼410 ppmv) and high (1000 ppmv) CO2 concentrations in a subtropical eutrophic region of the East China Sea and examined the community dynamics of microeukaryotes, bacterioplankton and microeukaryote-attached bacteria in the enclosed coastal seawater. The OA treatment with elevated CO2 affected taxa as the phytoplankton bloom stages progressed, with a 72.89% decrease in relative abundance of the protist Cercozoa on day 10 and a 322% increase in relative abundance of Stramenopile dominated by diatoms, accompanied by a 29.54% decrease in relative abundance of attached Alphaproteobacteria on day 28. Our study revealed that protozoans with different prey preferences had differing sensitivity to high CO2, and attached bacteria were more significantly affected by high CO2 compared to bacterioplankton. Our findings indicate that high CO2 changed the co-occurrence network complexity and stability of microeukaryotes more than those of bacteria. Furthermore, high CO2 was found to alter the proportions of potential interactions between phytoplankton and their predators, as well as microeukaryotes and their attached bacteria in the networks. The changes in the relative abundances and interactions of microeukaryotes between their predators in response to high CO2 revealed in our study suggest that high CO2 may have profound impacts on marine food webs.

Continue reading ‘Ocean acidification alters microeukaryotic and bacterial food web interactions in a eutrophic subtropical mesocosm’

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