Global warming and acidification, induced by a substantial increase in anthropogenic CO2 emissions, are expected to have profound impacts on biogeochemical cycles. However, underlying mechanisms of nitrous oxide (N2O) production in estuarine and coastal sediments remain rarely constrained under warming and acidification. Here, the responses of sediment N2O production pathways to warming and acidification were examined using a series of anoxic incubation experiments. Denitrification and N2O production were largely stimulated by the warming, while N2O production decreased under the acidification as well as the denitrification rate and electron transfer efficiency. Compared to warming alone, the combination of warming and acidification decreased N2O production by 26 ± 4%, which was mainly attributed to the decline of the N2O yield by fungal denitrification. Fungal denitrification was mainly responsible for N2O production under the warming condition, while bacterial denitrification predominated N2O production under the acidification condition. The reduced site preference of N2O under acidification reflects that the dominant pathways of N2O production were likely shifted from fungal to bacterial denitrification. In addition, acidification decreased the diversity and abundance of nirS-type denitrifiers, which were the keystone taxa mediating the low N2O production. Collectively, acidification can decrease sediment N2O yield through shifting the responsible production pathways, partly counteracting the warming-induced increase in N2O emissions, further reducing the positive climate warming feedback loop.
Continue reading ‘Acidification offset warming-induced increase in N2O production in estuarine and coastal sediments’Posts Tagged 'prokaryotes'
Acidification offset warming-induced increase in N2O production in estuarine and coastal sediments
Published 22 March 2024 Science ClosedTags: biological response, BRcommunity, chemistry, community composition, field, laboratory, molecular biology, North Pacific, otherprocess, prokaryotes, sediment
Fouling communities from the South African west coast are vulnerable to cooling and ocean acidification
Published 15 March 2024 Science ClosedTags: abundance, annelids, biological response, BRcommunity, bryozoa, chordata, community composition, crustaceans, fish, mollusks, multiple factors, otherprocess, prokaryotes, South Atlantic, temperature
Changing temperature and ocean acidification are well-recognised consequences of climate change in marine systems. In contrast to global trends, the South African west coast is experiencing cooling due to increased frequency and intensity of upwelling. The implications of concurrent cooling and acidification for marine biota are poorly understood, particularly at the community level. This laboratory study assessed how cooling and acidification might affect fouling communities along the South African west coast. Communities were experimentally exposed to two temperatures, 13℃ (current) and 9℃ (cooling), and three pH treatments, 7.9 (current), 7.6 and 7.4, for 18 days. Cooling and acidification altered community structure. Species diversity declined in response to acidification but was not affected by cooling. This was driven by greatest loss of species at 7.4 pH. Notably, acidification reduced the abundance of both calcifying and soft-bodied taxa, highlighting the vulnerability of taxa like ascidians to acidification. Overall, these results highlight the dominant threat posed by acidification, even for alien taxa that are often perceived as resilient to climate change. Additionally, in regions experiencing cooling, acidification may pose a greater threat to fouling communities than thermal changes.
Continue reading ‘Fouling communities from the South African west coast are vulnerable to cooling and ocean acidification’Marine phytoplankton and heterotrophic bacteria rapidly adapt to future pCO2 conditions in experimental co-cultures
Published 7 March 2024 Science ClosedTags: abundance, biological response, BRcommunity, community composition, growth, laboratory, molecular biology, otherprocess, phytoplankton, prokaryotes
The CO2 content of Earth’s atmosphere is rapidly increasing due to human consumption of fossil fuels. Models based on short-term culture experiments predict that major changes will occur in marine phytoplankton communities in the future ocean, but these models rarely consider how the evolutionary potential of phytoplankton or interactions within marine microbial communities may influence these changes. Here we experimentally evolved representatives of four phytoplankton functional types (silicifiers, calcifiers, coastal cyanobacteria, and oligotrophic cyanobacteria) in co-culture with a heterotrophic bacterium, Alteromonas, under either present-day or predicted future pCO2 conditions. Growth rates of cyanobacteria generally increased under both conditions, and the growth defects observed in ancestral Prochlorococcus cultures at elevated pCO2 and in axenic culture were diminished after evolution, possibly due to regulatory mutations in antioxidant genes. Except for Prochlorococcus, mutational profiles suggested phytoplankton experienced primarily purifying selection, but most Alteromonas lineages showed evidence of directional selection, especially when co-cultured with eukaryotic phytoplankton, where evolution appeared to favor a broad metabolic switch from growth on small organic acids to catabolism of more complex carbon substrates. Evolved Alteromonas were also poorer “helpers” for Prochlorococcus, supporting the assertion that the interaction between Prochlorococcus and heterotrophic bacteria is not a true mutualism but rather a competitive interaction stabilized by Black Queen processes. This work provides new insights on how phytoplankton will respond to anthropogenic change and on the evolutionary mechanisms governing the structure and function of marine microbial communities.
Continue reading ‘Marine phytoplankton and heterotrophic bacteria rapidly adapt to future pCO2 conditions in experimental co-cultures’Adaptive mechanism of the marine bacterium Pseudomonas sihuiensis-BFB-6S towards pCO2 variation: insights into synthesis of extracellular polymeric substances and physiochemical modulation
Published 26 February 2024 Science ClosedTags: biological response, BRcommunity, Indian, laboratory, physiology, primary production, prokaryotes
Highlights
- Optimal biofilm modulation can provide the adaptive response of bacteria.
- Potential characterization of EPS explored by microscopic and spectroscopic annotation.
- Modulation of EPS is a hallmark of the protection barrier.
- High concentration of pCO2 can trigger protein-less EPS release.
Abstract
Marine bacteria can adapt to various extreme environments by the production of extracellular polymeric substances (EPS). Throughout this investigation, impact of variable pCO2 levels on the metabolic activity and physiochemical modulation in EPS matrix of marine bacterium Pseudomonas sihuiensis – BFB-6S was evaluated using a fluorescence microscope, excitation-emission matrix (EEM), 2D-Fourier transform infrared correlation spectroscopy (2D-ATR-FTIR-COS), FT-NMR and TGA-DSC. From the results at higher pCO2 levels, there was a substantial reduction in EPS production by 58–62.8 % (DW). In addition to the biochemical composition of EPS, reduction in carbohydrates (8.7–47.6 %), protein (7.1–91.5 %), and lipids (16.9–68.6 %) content were observed at higher pCO2 levels. Functional discrepancies of fluorophores (tyrosine and tryptophan-like) in EPS, speckled differently in response to variable pCO2. The 2D-ATR-FTIR-COS analysis revealed functional amides (C
N, CC, C
O bending, -NH bending in amines) of EPS were preferentially altered, which led to the domination of polysaccharides relevant functional groups at higher pCO2. 1H NMR analysis of EPS confirmed the absence of chemical signals from H-C-COOH of proteins, α, β anomeric protons, and acetyl group relevant region at higher pCO2 levels. These findings can contribute new insights into the influence of pCO2 on the adaptation of marine microbes in future ocean acidification scenarios.
Divergent morphological and microbiome strategies of two neighbor sponges to cope with low pH in Mediterranean CO2 vents
Published 14 February 2024 Science ClosedTags: abundance, biological response, BRcommunity, community composition, field, Mediterranean, molecular biology, morphology, otherprocess, porifera, prokaryotes, vents
Highlights
- Sponges are seen as winner taxa of future OA, yet not all species respond equally.
- Neighbor sponges had different morphology and microbiome patterns in CO2 vents.
- Vent S. cunctatrix displayed morphology changes and incipient microbial dysbiosis.
- C. reniformis microbiomes were normobiotic, diverse and functionally flexible.
- Symbioses supplying C–N–S cycles, vitamins and probiotics uphold resilience to OA.
Abstract
Ocean Acidification (OA) profoundly impacts marine biochemistry, resulting in a net loss of biodiversity. Porifera are often forecasted as winner taxa, yet the strategies to cope with OA can vary and may generate diverse fitness status. In this study, microbial shifts based on the V3–V4 16S rRNA gene marker were compared across neighboring Chondrosia reniformis sponges with high microbial abundance (HMA), and Spirastrella cunctatrix with low microbial abundance (LMA) microbiomes. Sponge holobionts co-occurred in a CO2 vent system with low pH (pHT ~ 7.65), and a control site with Ambient pH (pHT ~ 8.05) off Ischia Island, representing natural analogues to study future OA, and species’ responses in the face of global environmental change. Microbial diversity and composition varied in both species across sites, yet at different levels. Increased numbers of core taxa were detected in S. cunctatrix, and a more diverse and flexible core microbiome was reported in C. reniformis under OA. Vent S. cunctatrix showed morphological impairment, along with signs of putative stress-induced dysbiosis, manifested by: 1) increases in alpha diversity, 2) shifts from sponge related microbes towards seawater microbes, and 3) high dysbiosis scores. Chondrosia reniformis in lieu, showed no morphological variation, low dysbiosis scores, and experienced a reduction in alpha diversity and less number of core taxa in vent specimens. Therefore, C. reniformis is hypothesized to maintain an state of normobiosis and acclimatize to OA, thanks to a more diverse, and likely metabolically versatile microbiome. A consortium of differentially abundant microbes was identified associated to either vent or control sponges, and chiefly related to carbon, nitrogen and sulfur-metabolisms for nutrient cycling and vitamin production, as well as probiotic symbionts in C. reniformis. Diversified symbiont associates supporting functional convergence could be the key behind resilience towards OA, yet specific acclimatization traits should be further investigated.
Continue reading ‘Divergent morphological and microbiome strategies of two neighbor sponges to cope with low pH in Mediterranean CO2 vents’The deep-sea ecosystem engineer Geodia barretti (Porifera, Demospongiae) maintains basic physiological functions under simulated future ocean pH and temperature conditions
Published 6 February 2024 Science ClosedTags: abundance, biological response, BRcommunity, laboratory, multiple factors, North Atlantic, otherprocess, physiology, porifera, prokaryotes, respiration, temperature
Global ocean warming and acidification will alter the physicochemical conditions in the deep North-Atlantic Ocean. Here, extensive sponge grounds, often dominated by the demosponge species Geodia barretti, provide three-dimensional structure, habitat and significantly contribute to benthic-pelagic coupling and nutrient cycling processes in the deep sea. It is unknown if G. barretti remains physiologically functional under the future physicochemical properties of an Anthropocene ocean. In this study, individuals of G. barretti collected from 300 m water depth in the Barents Sea, were exposed to four treatments resembling future ocean conditions (no treatment, 4 °C increase in seawater temperature, decrease of seawater pH by 0.3, and a combination of the high temperature, low pH). Over the course of 39 weeks, oxygen consumption, dissolved inorganic nutrient fluxes, and bacterioplankton clearance rates were measured as indicators of metabolic activity. We found that all indicators within each sponge individual and per treatment were highly variable over time and no effect of manipulated seawater treatments on these parameters could be demonstrated. Oxygen consumption rates in all groups closely followed a seasonal pattern, potentially caused by (a)biotic cues in the seawater flowing through the experimental aquaria. While similar metabolic rates across all treatments suggest that G. barretti physiologically coped with simulated future ocean conditions, observed tissue necrosis in experimental animals might indicate that the response of the complex, high microbial G. barretti sponge (i.e., sponge host and microbial symbionts) to future ocean conditions may not be reflected in basic physiological processes.
Continue reading ‘The deep-sea ecosystem engineer Geodia barretti (Porifera, Demospongiae) maintains basic physiological functions under simulated future ocean pH and temperature conditions’Microbial associates of an endemic Mediterranean seagrass enhance the access of the host and the surrounding seawater to inorganic nitrogen under ocean acidification
Published 21 November 2023 Science ClosedTags: biogeochemistry, biological response, BRcommunity, field, Mediterranean, molecular biology, nitrogen fixation, otherprocess, phanerogams, physiology, primary production, prokaryotes, vents
Seagrasses are important primary producers in oceans worldwide. They live in shallow coastal waters that are experiencing carbon dioxide enrichment and ocean acidification. Posidonia oceanica, an endemic seagrass species that dominates the Mediterranean Sea, achieves high abundances in seawater with relatively low concentrations of dissolved inorganic nitrogen. Here we tested whether microbial metabolisms associated with P. oceanica and surrounding seawater enhance seagrass access to nitrogen. Using stable isotope enrichments of intact seagrass with amino acids, we showed that ammonification by free-living and seagrass-associated microbes produce ammonium that is likely used by seagrass and surrounding particulate organic matter. Metagenomic analysis of the epiphytic biofilm on the blades and rhizomes support the ubiquity of microbial ammonification genes in this system. Further, we leveraged the presence of natural carbon dioxide vents and show that the presence of P. oceanica enhanced the uptake of nitrogen by water column particulate organic matter, increasing carbon fixation by a factor of 8.6–17.4 with the greatest effect at CO2 vent sites. However, microbial ammonification was reduced at lower pH, suggesting that future ocean climate change will compromise this microbial process. Thus, the seagrass holobiont enhances water column productivity, even in the context of ocean acidification.
Continue reading ‘Microbial associates of an endemic Mediterranean seagrass enhance the access of the host and the surrounding seawater to inorganic nitrogen under ocean acidification’The interactive effects of ocean acidification and warming on bioeroding sponge Spheciospongia vesparium microbiome indicated by metatranscriptomics
Published 16 November 2023 Science ClosedTags: adaptation, biological response, BRcommunity, laboratory, molecular biology, multiple factors, North Pacific, otherprocess, physiology, porifera, prokaryotes, temperature
Global climate change will cause coral reefs decline and is expected to increase the reef erosion potential of bioeroding sponges. Microbial symbionts are essential for the overall fitness and survival of sponge holobionts in changing ocean environments. However, we rarely know about the impacts of ocean warming and acidification on bioeroding sponge microbiome. Here, the structural and functional changes of the bioeroding sponge Spheciospongia vesparium microbiome, as well as its recovery potential, were investigated at the RNA level in a laboratory system simulating 32 °C and pH 7.7. Based on metatranscriptome analysis, acidification showed no significant impact, while warming or simultaneous warming and acidification disrupted the sponge microbiome. Warming caused microbial dysbiosis and recruited potentially opportunistic and pathogenic members of Nesiotobacter, Oceanospirillaceae, Deltaproteobacteria, Epsilonproteobacteria, Bacteroidetes and Firmicutes. Moreover, warming disrupted nutrient exchange and molecular interactions in the sponge holobiont, accompanied by stimulation of virulence activity and anaerobic metabolism including denitrification and dissimilatory reduction of nitrate and sulfate to promote sponge necrosis. Particularly, the interaction between acidification and warming alleviated the negative effects of warming and enhanced the Rhodobacteraceae-driven ethylmalonyl-CoA pathway and sulfur-oxidizing multienzyme system. The microbiome could not recover during the experiment period after warming or combined stress was removed. This study suggests that warming or combined warming and acidification will irreversibly destabilize the S. vesparium microbial community structure and function, and provides insight into the molecular mechanisms of the interactive effects of acidification and warming on the sponge microbiome.
Continue reading ‘The interactive effects of ocean acidification and warming on bioeroding sponge Spheciospongia vesparium microbiome indicated by metatranscriptomics’Unraveling prokaryotic diversity distribution and functional pattern on nitrogen and methane cycling in the subtropical Western North Pacific Ocean
Published 9 November 2023 Science ClosedTags: biological response, BRcommunity, community composition, field, molecular biology, nitrogen fixation, North Pacific, otherprocess, physiology, prokaryotes, respiration
Prokaryotes play an important role in marine nitrogen and methane cycles. However, their community changes and metabolic modifications to the concurrent impact of ocean warming (OW), acidification (OA), deoxygenation (OD), and anthropogenic‑nitrogen-deposition (AND) from the surface to the deep ocean remains unknown. We examined here the amplicon sequencing approach across the surface (0–200 m; SL), intermediate (200–1000 m; IL), and deep layers (1000–2200 m; DL), and characterized the simultaneous impacts of OW, OA, OD, and AND on the Western North Pacific Ocean prokaryotic changes and their functional pattern in nitrogen and methane cycles. Results showed that SL possesses higher ammonium oxidation community/metabolic composition assumably the reason for excess nitrogen input from AND and modification of their kinetic properties to OW adaptation. Expanding OD at IL showed hypoxic conditions in the oxygen minimum layer, inducing higher microbial respiration that elevates the dimerization of nitrification genes for higher nitrous oxide production. The aerobic methane-oxidation composition was dominant in SL presumably the reason for adjustment in prokaryotic optimal temperature to OW, while anaerobic oxidation composition was dominant at IL due to the evolutionary changes coupling with higher nitrification. Our findings refocus on climate-change impacts on the open ocean ecosystem from the surface to the deep-environment integrating climate-drivers as key factors for higher nitrous-oxide and methane emissions.
Continue reading ‘Unraveling prokaryotic diversity distribution and functional pattern on nitrogen and methane cycling in the subtropical Western North Pacific Ocean’Deciphering the evolvement of microbial communities from hydrothermal vent sediments in a global change perspective
Published 8 November 2023 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, field, Mediterranean, mesocosms, otherprocess, physiology, prokaryotes, respiration, sediment, vents
Microbial communities first respond to changes of external environmental conditions. Observing the microbial responses to environmental changes in terms of taxonomic and functional biodiversity is therefore of great interest, particularly in extreme environments, where the already extreme conditions can become even harsher. In this study, sediment samples from three different shallow hydrothermal vents in Levante Bay (Vulcano Island, Aeolian Islands, Italy) were used to set up microcosm experiments with the aim to explore the microbial dynamics under changing conditions of pH and redox potential over a 90-days period. The leading hypothesis was to establish under microcosm conditions whether the starting microbial communities of the sediments evolved differently depending on their origin. To profile the dynamics of microbial populations over time, biodiversity, enzymatic profile, total cell abundance estimations, total/respiring cell ratio were estimated by using different approaches. An evident change in the microbial community structure was observed, mainly in the microcosm containing the sediment from the most acidified site, which was characterized by a highly diversified microbial community (in prevalence composed of Thermotoga, Desulfobacterota, Planctomycetota, Synergistota and Deferribacterota). An increase in microbial resistant forms (e.g., spore-forming species) with anaerobic metabolism was detected in all experimental conditions. Differential physiological responses characterized the sedimentary microbial communities. Proteolytic activity appeared to be stimulated under microcosm conditions, whereas the alkaline phosphatase activity was significantly depressed at low pH values, like those that were measured at the station showing intermediate pH-conditions. The results confirmed a differential response of microbial communities depending on the starting environmental conditions.
Continue reading ‘Deciphering the evolvement of microbial communities from hydrothermal vent sediments in a global change perspective’Impact of ocean acidification on the gut histopathology and intestinal microflora of Exopalaemon carinicauda
Published 30 October 2023 Science ClosedTags: abundance, biological response, BRcommunity, community composition, crustaceans, laboratory, molecular biology, morphology, North Pacific, otherprocess, physiology, prokaryotes
Marine crustaceans are severely threatened by environmental factors such as ocean acidification, but, despite the latter’s negative impact on growth, molting, and immunity, its effects on intestinal microflora remain poorly understood. This work studied the gut morphology and intestinal microflora of Exopalaemon carinicauda, grown in seawater of different pH levels: 8.1 (control group), 7.4 (AC74 group), and 7.0 (AC70 group). Ocean acidification was found to cause intestinal damage, while significantly altering the microflora’s composition. However, the α-diversity did not differ significantly between the groups. At the phylum level, the relative abundance of Proteobacteria decreased in the acidification groups, while at the genus level, the relative abundance of Sphingomonas decreased. Babeliales was a prominent discriminative biomarker in the AC74 group, with Actinobacteriota, Micrococcales, Beijerinckiaceae, Methylobacterium, and Flavobacteriales being the main ones in the AC70 group. The function prediction results also indicated an enrichment of pathways related to metabolism for the acidification groups. At the same time, those related to xenobiotics’ biodegradation and metabolism were inhibited in AC74 but enhanced in AC70. This is the first study examining the impact of ocean acidification on the intestinal microflora of crustaceans. The results are expected to provide a better understanding of the interactions between shrimp and their microflora in response to environmental stressors.
Continue reading ‘Impact of ocean acidification on the gut histopathology and intestinal microflora of Exopalaemon carinicauda’Oxidative stress-induced DNA damage and DNA repair mechanisms in mangrove bacteria exposed to climatic and heavy metal stressors
Published 25 October 2023 Science ClosedTags: biological response, BRcommunity, molecular biology, prokaryotes, review
Bacteria thriving in the mangrove ecosystem are major drivers of elemental cycles. Climate change and environmental stressors (heavy metals) influence the performance of these microorganisms, thereby affecting the biogeochemical cycle. The present study reports the genotoxic effect of climatic and heavy metal stressors on mangrove bacteria and their adaptation strategies. Comparative analysis between two bacterial strains, Bacillus stercoris GST-03 and Pseudomonas balearica DST-02 isolated from the Bhitarkanika mangrove ecosystem, Odisha, India, showed cellular injuries in response to various stressors as evident by declined growth, elevated levels of reactive oxygen species (ROS) and resulted DNA damage. B. stercoris GST-03 showed more tolerance towards acidic pH, whereas P. balearica DST-02 showed higher tolerance towards UV exposure and heavy metals (Lead and Cadmium). The adaptation strategies of the strains revealed a significant role of GST in ROS scavenging activity and the involvement of Nucleotide excision repair or SOS response pathways. However, irreparable DNA damage was observed at pH 9 and 200 ppm Cd in B. stercoris GST-03, and at pH 4, 1000 ppm of Pb and 200 ppm of Cd in P. balearica DST-02. The current findings provide a broad overview of bacterial response and adaptability concerning future climate and environmental changes.
Continue reading ‘Oxidative stress-induced DNA damage and DNA repair mechanisms in mangrove bacteria exposed to climatic and heavy metal stressors’Assessing the impact of CO2 equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system
Published 25 October 2023 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, field, mesocosms, mitigation, North Pacific, otherprocess, photosynthesis, phytoplankton, primary production, prokaryotes, respiration
Ocean Alkalinity Enhancement (OAE) is a Negative Emissions Technology (NET) that shows significant potential for climate change mitigation. By increasing the bicarbonate ion concentration in ocean water, OAE could enhance long-term carbon storage and mitigate ocean acidification. However, the side effects and/or potential co-benefits of OAE on natural planktonic communities remain poorly understood. To address this knowledge gap, a mesocosm experiment was conducted in the oligotrophic waters of Gran Canaria. A CO2-equilibrated Total Alkalinity (TA) gradient was employed in increments of 300 µmol·L-1, ranging from ~2400 to ~4800 µmol·L-1. This study represents the first attempt to evaluate the potential impacts of OAE on planktonic communities under natural conditions. The results show that Net Community Production (NCP), Gross Production (GP), Community Respiration (CR) rates, as well as the metabolic balance (GP:CR), did not exhibit a linear response to the whole alkalinity gradient. Instead, significant polynomial and linear regression models were observed for all rates up to ∆TA1800 µmol·L-1, in relation to the Dissolved Inorganic Carbon (DIC) concentrations. Notably, the ∆TA1500 and 1800 µmol·L-1 treatments showed peaks in NCP shifting from a heterotrophic to an autotrophic state, with NCP values of 4 and 8 µmol O2 kg-1 d-1, respectively. These peaks and the optimum curve were also reflected in the nanophytoplankton abundance, size-fractionated chlorophyll a and 14C uptake data. Furthermore, abiotic precipitation occurred in the highest treatment after day 21 but no impact on the measured parameters was detected. Overall, a damaging effect of CO2-equilibrated OAE in the range applied here, on phytoplankton primary production, community metabolism and composition could not be inferred. In fact, a potential co-benefit to OAE was observed in the form of the positive curvilinear response to the DIC gradient up to the ∆TA1800 treatment. Further experimental research at this scale is key to gain a better understanding of the short and long-term effects of OAE on planktonic communities.
Continue reading ‘Assessing the impact of CO2 equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system’Structurally stable but functionally disrupted marine microbial communities under a future climate change scenario: potential importance for nitrous oxide emissions
Published 24 October 2023 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, molecular biology, mollusks, multiple factors, North Atlantic, otherprocess, primary production, prokaryotes, respiration, temperature
Highlights
- No effect of OW and OA on the composition and α diversity of microbial biofilms.
- OW promoting nitrous oxide emissions of microbial biofilms.
- OA decreasing nitrous oxide emissions of microbial biofilms.
- An overriding impact of OA over OW on microbial biofilm nitrous oxide emissions.
Abstract
The blue mussel Mytilus edulis is a widespread and abundant bivalve species along the North Sea with high economic and ecological importance as an engineer species. The shell of mussels is intensively colonized by microbial organisms that can produce significant quantities of nitrous oxide (N2O), a potent greenhouse gas. To characterize the impacts of climate change on the composition, structure and functioning of microbial biofilms on the shell surface of M. edulis, we experimentally exposed them to orthogonal combinations of increased seawater temperature (20 vs. 23 °C) and decreased pH (8.0 vs. 7.7) for six weeks. We used amplicon sequencing of the 16S rRNA gene to characterize the alpha and beta diversity of microbial communities on the mussel shell. The functioning of microbial biofilms was assessed by measuring aerobic respiration and nitrogen emission rates. We did not report any significant impacts of climate change treatments on the diversity of mussel microbiomes nor on the structure of these communities. Lowered pH and increased temperature had antagonistic effects on the functioning of microbial communities with decreased aerobic respiration and N2O emission rates of microbial biofilms in acidified seawater compared to increased rates in warmer conditions. An overriding impact of acidification over warming was finally observed on N2O emissions when the two factors were combined. Although acidification and warming in combination significantly reduced N2O biofilm emissions, the promotion of aquaculture activities in coastal waters where shellfish do not normally occur at high biomass and density could nonetheless result in unwanted emissions of this greenhouse gas in a near future.
Continue reading ‘Structurally stable but functionally disrupted marine microbial communities under a future climate change scenario: potential importance for nitrous oxide emissions’Long-term coral microbial community acclimatization is associated with coral survival in a changing climate
Published 4 October 2023 Science ClosedTags: abundance, adaptation, biological response, BRcommunity, community composition, corals, laboratory, mesocosms, mortality, North Pacific, otherprocess, prokaryotes
The plasticity of some coral-associated microbial communities under stressors like warming and ocean acidification suggests the microbiome has a role in the acclimatization of corals to future ocean conditions. Here, we evaluated the acclimatization potential of coral-associated microbial communities of four Hawaiian coral species (Porites compressa, Porites lobata, Montipora capitata, and Pocillopora acuta) over 22-month mesocosm experiment. The corals were exposed to one of four treatments: control, ocean acidification, ocean warming, or combined future ocean conditions. Over the 22-month study, 33–67% of corals died or experienced a loss of most live tissue coverage in the ocean warming and future ocean treatments while only 0–10% died in the ocean acidification and control. Among the survivors, coral-associated microbial communities responded to the chronic future ocean treatment in one of two ways: (1) microbial communities differed between the control and future ocean treatment, suggesting the potential capacity for acclimatization, or (2) microbial communities did not significantly differ between the control and future ocean treatment. The first strategy was observed in both Porites species and was associated with higher survivorship compared to M. capitata and P. acuta which exhibited the second strategy. Interestingly, the microbial community responses to chronic stressors were independent of coral physiology. These findings indicate acclimatization of microbial communities may confer resilience in some species of corals to chronic warming associated with climate change. However, M. capitata genets that survived the future ocean treatment hosted significantly different microbial communities from those that died, suggesting the microbial communities of the survivors conferred some resilience. Thus, even among coral species with inflexible microbial communities, some individuals may already be tolerant to future ocean conditions. These findings suggest that coral-associated microbial communities could play an important role in the persistence of some corals and underlie climate change-driven shifts in coral community composition.
Continue reading ‘Long-term coral microbial community acclimatization is associated with coral survival in a changing climate’Fermentative iron reduction buffers acidification and promotes microbial metabolism in marine sediments
Published 19 September 2023 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, laboratory, mitigation, North Pacific, otherprocess, physiology, prokaryotes, sediment
Microbial iron reduction is a crucial process in natural ecosystems, contributing to the cycling of elements and supporting the biological activities of organisms. However, the significance of fermentative iron reduction in marine environments and microbial metabolism remains understudied compared with iron reduction coupled with respiration. The main objective of our study was to investigate the influence of fermentative iron reduction on microbial populations and marine sediment. Our findings revealed a robust iron-reducing activity in the enriched marine sediment, demonstrating a maximum ferrihydrite-reducing rate of 0.063 mmol/h. Remarkably, ferrihydrite reduction exhibited an intriguing pH-buffering effect through the release of OH+ and Fe2+ ions, distinct from fermentation alone. This effect resulted in substantial improvements in glucose consumption (71.4%), bacterial growth (48.1%), and metabolite production (80.8%). To further validate the acidification-buffering and metabolism-promoting effects of ferrihydrite reduction, we conducted iron-reducing experiments using a pure strain, Clostridium pasteurianum DMS525. The observed pH-buffering effect resulted from microbial iron reduction in marine sediment and has potential environmental implications by reducing CO2 emissions, mitigating acidification, and preserving the delicate balance of marine ecosystems.
Continue reading ‘Fermentative iron reduction buffers acidification and promotes microbial metabolism in marine sediments’Microbial communities inhabiting shallow hydrothermal vents as sentinels of acidification processes
Published 4 September 2023 Science ClosedTags: abundance, archaea, biological response, BRcommunity, community composition, field, Mediterranean, molecular biology, otherprocess, prokaryotes, sediment, vents
Introduction: Shallow hydrothermal vents are considered natural laboratories to study the effects of acidification on biota, due to the consistent CO2 emissions with a consequent decrease in the local pH.
Methods: Here the microbial communities of water and sediment samples from Levante Bay (Vulcano Island) with different pH and redox conditions were explored by Next Generation Sequencing techniques. The taxonomic structure was elucidated and compared with previous studies from the same area in the last decades.
Results and discussion: The results revealed substantial shifts in the taxonomic structure of both bacterial and archaeal communities, with special relevance in the sediment samples, where the effects of external parameters probably act for a long time. The study demonstrates that microbial communities could be used as indicators of acidification processes, by shaping the entire biogeochemical balance of the ecosystem in response to stress factors. The study contributes to understanding how much these communities can tell us about future changes in marine ecosystems.
Continue reading ‘Microbial communities inhabiting shallow hydrothermal vents as sentinels of acidification processes’Genomic signatures suggesting adaptation to ocean acidification in a coral holobiont from volcanic CO2 seeps
Published 25 July 2023 Science ClosedTags: adaptation, biological response, BRcommunity, corals, field, molecular biology, otherprocess, physiology, phytoplankton, prokaryotes, South Pacific, vents
Ocean acidification, caused by anthropogenic CO2 emissions, is predicted to have major consequences for reef-building corals, jeopardizing the scaffolding of the most biodiverse marine habitats. However, whether corals can adapt to ocean acidification and how remains unclear. We addressed these questions by re-examining transcriptome and genome data of Acropora millepora coral holobionts from volcanic CO2 seeps with end-of-century pH levels. We show that adaptation to ocean acidification is a wholistic process involving the three main compartments of the coral holobiont. We identified 441 coral host candidate adaptive genes involved in calcification, response to acidification, and symbiosis; population genetic differentiation in dinoflagellate photosymbionts; and consistent transcriptional microbiome activity despite microbial community shifts. Coral holobionts from natural analogues to future ocean conditions harbor beneficial genetic variants with far-reaching rapid adaptation potential. In the face of climate change, these populations require immediate conservation strategies as they could become key to coral reef survival.
Continue reading ‘Genomic signatures suggesting adaptation to ocean acidification in a coral holobiont from volcanic CO2 seeps’Seagrass Thalassia hemprichii and associated bacteria co-response to the synergistic stress of ocean warming and ocean acidification
Published 21 July 2023 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, molecular biology, multiple factors, North Pacific, otherprocess, phanerogams, photosynthesis, physiology, prokaryotes, temperature
Seagrass meadows play vital ecological roles in the marine ecosystem. Global climate change poses considerable threats to seagrass survival. However, it is unclear how seagrass and its associated bacteria will respond under future complex climate change scenarios. This study explored the effects of ocean warming (+2 °C) and ocean acidification (−0.4 units) on seagrass physiological indexes and bacterial communities (sediment and rhizosphere bacteria) of the seagrass Thalassia hemprichii during an experimental exposure of 30 days. Results demonstrated that the synergistic effect of ocean warming and ocean acidification differed from that of one single factor on seagrass and the associated bacterial community. The seagrass showed a weak resistance to ocean warming and ocean acidification, which manifested through the increase in the activity of typical oxidoreductase enzymes. Moreover, the synergistic effect of ocean warming and ocean acidification caused a significant decrease in seagrass’s chlorophyll content. Although the bacterial community diversity exhibited higher resistance to ocean warming and ocean acidification, further bacterial functional analysis revealed the synergistic effect of ocean warming and ocean acidification led to significant increases in SOX-related genes abundance which potentially supported the seagrass in resisting climate stress by producing sulfates and oxidizing hydrogen sulfide. More stable bacterial communities were detected in the seagrass rhizosphere under combined ocean warming and ocean acidification. While for one single environmental stress, simpler networks were detected in the rhizosphere. In addition, the observed significant correlations between several modules of the bacterial community and the physiological indexes of the seagrass indicate the possible intimate interaction between seagrass and bacteria under ocean warming and ocean acidification. This study extends our understanding regarding the role of seagrass associated bacterial communities and sheds light on both the prediction and preservation of the seagrass meadow ecosystems in response to global climate change.
Continue reading ‘Seagrass Thalassia hemprichii and associated bacteria co-response to the synergistic stress of ocean warming and ocean acidification’Acclimation to various temperature and pCO2 levels does not impact the competitive ability of two strains of Skeletonema marinoi in natural communities subjected to different pCO2 treatments
Published 12 July 2023 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, molecular biology, multiple factors, otherprocess, phytoplankton, prokaryotes, temperature
Understanding the long-term response of key marine phytoplankton species to ongoing global changes is pivotal in determining how oceanic community composition will respond over the coming decades. To better understand the impact of ocean acidification and warming, we acclimated two strains of Skeletonema marinoi isolated from natural communities to three pCO2 (400 atm, 600 atm and 1000 atm) for 8 months and five temperature conditions (7°C, 10°C, 13°C, 16°C and 19°C) for 11 months. These strains were then tested in natural microbial communities, exposed to three pCO2 treatments (400 atm, 600 atm and 1000 atm). DNA metabarcoding of the 16S and 18S gene for prokaryotes and eukaryotes respectively was used to show differences in abundance and diversity between the three CO2 treatments. We found there were no significant differences in acclimated S. marinoi concentrations between the three pCO2 treatments, most likely due to the high variability these strains experience in their natural environment. There were significant compositional differences between the pCO2 treatments for prokaryotes suggesting that indirect changes to phytoplankton-bacteria interactions could be a possible driver of bacterial community composition. Yet, there were no differences for eukaryotic community composition, with all treatments dominated by diatoms (but not the acclimated S. marinoi) resulting in similar biodiversity. Furthermore, strain-specific differences in community composition suggests interactions between prokaryotic and eukaryotic taxa could play a role in determining future community composition.
Continue reading ‘Acclimation to various temperature and pCO2 levels does not impact the competitive ability of two strains of Skeletonema marinoi in natural communities subjected to different pCO2 treatments’
