On both tropical and temperate reefs, the calcium carbonate skeletons produced by scleractinian corals provide habitat that supports a high biodiversity of fishes and invertebrates. Ocean acidification (OA), driven by excess anthropogenic CO2 uptake, causes declines in seawater pH and carbonate ion concentration and can compromise coral calcification by causing increased energetic demands. Deciphering how corals meet this increased energetic demand is critical to predicting their future persistence. Oculina arbuscula is a facultatively symbiotic temperate coral common on subtropical reefs of the South Atlantic Bight. This coral has demonstrated calcification resilience to reduced pH conditions in both symbiotic and aposymbiotic forms, despite aposymbiotic colonies lacking access to photosynthetically-derived energy. I hypothesized that energy acquired through heterotrophy is a mechanism by which O. arbuscula obtains the resources necessary to overcome the heightened energy demand created by ocean acidification. To investigate the role of heterotrophy, a 90-day laboratory experiment was conducted exposing aposymbiotic O. arbuscula fragments to a pH of either 7.7 or 8.0 under three different feeding levels of Artemia spp. nauplii. Although fragments with greater food consumption showed significantly higher calcification rates, this effect was independent of pH. Similarly, biochemical analyses indicated that total protein and total carbohydrate stores increased with higher food consumption but were unaffected by pH exposure. In contrast, total lipid stores decreased during the experiment, regardless of pH exposure or food level, suggesting the heterotrophic contribution to lipid stores was deficient. Together, these results indicate that while heterotrophically-derived energy may not be a primary mechanism underlying the ability of O. arbuscula to sustain calcification rates under OA stress, this coral species should continue to thrive in an increasingly acidifying ocean as long as heterotrophic food resources are in abundance.
Continue reading ‘The role of heterotrophy in the response of Oculina arbuscula to ocean acidification’Posts Tagged 'BRcommunity'
The role of heterotrophy in the response of Oculina arbuscula to ocean acidification
Published 31 December 2025 Science ClosedTags: biological response, BRcommunity, calcification, corals, laboratory, multiple factors, North Atlantic, physiology, phytoplankton
Aquaculture of seaweeds (Saccharina latissima, Ulva spp., Gracilaria spp.) significantly improves the growth of co-cultivated bivalves in mesotrophic, but not eutrophic, estuaries
Published 29 December 2025 Science ClosedTags: algae, biological response, BRcommunity, chemistry, field, fisheries, mitigation, mollusks, morphology, North Atlantic
The co-cultivation of seaweeds with bivalve shellfish is a potential strategy for protecting bivalve crops against anthropogenic coastal acidification and hypoxia. We co-cultivated seaweeds and bivalves using a succession of seaweed species according to season (winter, Saccharina latissima → spring, Ulva spp. → summer, Gracilaria spp.) together with eastern oysters (Crassostrea virginica) and blue mussels (Mytilus edulis). Bivalves and seaweeds were deployed in two estuaries that contrasted in trophic state, one mesotrophic and one eutrophic. In all five experiments in the mesotrophic system, cocultivation with seaweeds significantly increased weight- and/or shell-based growth of bivalves (p < 0.05). Growth rate increases for C. virginica were modest, with weight-based growth improving by 17–21% and shell-based growth improving by 3–27% with seaweed co-culture of all macroalgal species. For M. edulis, the effect was large; co-culture with S. latissima caused 47% and 114% increases in shell- and weight-based growth rates, respectively. In the four experiments in the eutrophic estuary, co-culture with seaweeds did not significantly improve bivalve growth. Seaweed cultivation significantly improved water quality metrics (increased pH and dissolved oxygen (DO); p < 0.05 in all cases) in and around the seaweed sites at both locations, although increases in pH and DO were modest, and even in control treatments, there were no prolonged periods of harmful pH or DO levels. An abundance of macroalgal detritus may have bolstered the diets of co-cultivated bivalves in the mesotrophic estuary, a hypothesis supported by lower chlorophyll a concentration, and therefore lower planktonic food levels, at that site. Given that seaweeds display species-specific allelopathic effects against phytoplankton, it is also possible that the presence of seaweeds altered the phytoplankton community to the benefit of the bivalves. Regardless, the findings here demonstrate that co-cultivation with seaweeds can accelerate the growth of bivalves.
Continue reading ‘Aquaculture of seaweeds (Saccharina latissima, Ulva spp., Gracilaria spp.) significantly improves the growth of co-cultivated bivalves in mesotrophic, but not eutrophic, estuaries’Compound hypoxia with heat or acidification stress induces synergistic and additive effects on coral physiology
Published 26 December 2025 Science ClosedTags: biological response, BRcommunity, corals, laboratory, morphology, multiple factors, North Atlantic, oxygen, photosynthesis, physiology, phytoplankton, respiration
As climate change accelerates, coastal marine ecosystems are increasingly exposed to co-occurring stressors whose combined effects are nonlinear and difficult to predict. Deoxygenation is a rapidly intensifying yet underrecognized threat to coral reefs that interacts with heat and acidification to alter coral physiology and stress resilience. However, the effects of hypoxia-related compound events on corals are largely unknown, underscoring the need for multi-stressor studies. Here, we conducted two extended-exposure experiments (12–17 days) across the coral species Porites furcata, Porites astreoides and Siderastrea siderea, to disentangle the individual and combined effects of low dissolved oxygen (hypoxia) with either heat or acidification. We measured eight phenotypic traits related to growth, metabolism, and symbiosis health to test whether hypoxia imposes energetic constraints or other physiological stress that amplify the effects of heat or acidification. Standardized effect size analysis across 24 stressor–trait combinations revealed 13 additive, 10 synergistic, and only one antagonistic response. Hypoxia consistently suppressed dark respiration by 37–49% across species and altered photophysiology in the two Porites species, whereas acidification alone had minimal effects, particularly in S. siderea. Heat stress caused the most pronounced declines across nearly all traits, and when combined with hypoxia, it produced the highest number of synergistic interactions. In contrast, the combination of hypoxia and acidification largely resulted in additive responses, suggesting that independent physiological mechanisms underlie these effects. All corals showed strong metabolic depression under hypoxia which is likely beneficial as a short-term adaptive response but may impose energetic constraints in the long-term. These findings highlight deoxygenation as critical yet often overlooked drivers of coral reef vulnerability. More multi-stressor experiments across a range of species are urgently needed to improve predictions of reef resilience under future ocean conditions, where compound stress events are expected to become more frequent and severe.
Continue reading ‘Compound hypoxia with heat or acidification stress induces synergistic and additive effects on coral physiology’Syntheses on taxonomic and functional biodiversity related to ocean acidification in a well-studied CO2 vents system: the Castello Aragonese of Ischia (Italy)
Published 22 December 2025 Science ClosedTags: biological response, BRcommunity, community composition, field, Mediterranean, otherprocess, review, vents
Ocean acidification (OA) is considered a relevant additional threat to marine biodiversity and is linked to the increasing CO2 concentration in the atmosphere. Here, we provide a synthesis on the loss of both taxonomic and functional biodiversity, in the up to date best studied CO2 vents in the world, the Castello Aragonese of Ischia (Tyrrhenian Sea, Italy), analyzing a large data set available at this site and reporting qualitative taxonomic data along a gradient of OA from ambient normal conditions outside the vents (pH 8.1) to low pH conditions (pH 7.8–7.9) and extreme low pH conditions (pH < 7.4). A total of 618 taxa were recorded (micro- and macrophytes, benthic invertebrates, and fishes). A relevant loss of biodiversity (46% of the species) was documented from control/normal pH conditions to low pH, and up to 56% species loss from control of extreme low pH conditions. Functional groups analysis on the fauna (calcification, size, motility, feeding habit, and reproduction/development) allowed us to draw an identikit of the species which is able to better thrive under OA conditions. These are motile forms, small- or medium-sized, generalist feeders, at the low level of the food web (herbivores or detritivores), mainly brooders, or with indirect benthic development, and without calcification or weakly calcified.
Continue reading ‘Syntheses on taxonomic and functional biodiversity related to ocean acidification in a well-studied CO2 vents system: the Castello Aragonese of Ischia (Italy)’Genotype and symbiont composition rather than environment influence susceptibility to stony coral tissue loss disease in coral restoration broodstock
Published 19 December 2025 Science ClosedTags: biological response, BRcommunity, corals, multiple factors, North Atlantic, performance, phytoplankton, temperature
Over the last several decades, Florida’s Coral Reef has been impacted by global and local stressors causing significant declines in living coral with no signs of natural recovery. Ocean warming, ocean acidification, and infectious diseases are major contributors to the precipitous loss of corals within this region. Since 2014, the stony coral tissue loss disease (SCTLD) outbreak has been particularly devastating, causing unprecedented mortality in over 20 massive coral species. As SCTLD is now endemic in the region, and threats from climate change are likely to persist, studying the disease susceptibility of different coral genotypes under future environmental scenarios is vital for effective restoration. Here, we exposed Orbicella faveolata and Pseudodiploria clivosa genotypes to wild colonies showing signs consistent with SCTLD immediately following a 2-month long exposure to ocean warming (OW) and ocean acidification (OA) scenarios. Corals were exposed to SCTLD for 3 weeks while maintaining the environmental treatments. For both species, pre-exposure to OW and OA scenarios did not make corals more susceptible to SCTLD. However, three genotypes hosting higher levels of Breviolum were at increased risk for showing SCTLD signs under these conditions. One O. faveolata genotype was consistently resistant to SCTLD under the different scenarios, suggesting that natural levels of resistance exist in coral restoration broodstock. Understanding why this genotype could withstand exposure to these stressors may be critical for ensuring survival of restored populations into the future.
Continue reading ‘Genotype and symbiont composition rather than environment influence susceptibility to stony coral tissue loss disease in coral restoration broodstock’Asymmetric effects of acidification and warming on foundation species and their predators in the California rocky intertidal zone
Published 11 December 2025 Science ClosedTags: algae, BRcommunity, calcification, laboratory, mesocosms, mollusks, morphology, multiple factors, North Pacific, performance, photosynthesis, respiration, temperature
The effects of climate change on marine organisms act through multiple pathways, as ocean warming and acidification can affect both their physiology and interspecies interactions. Asymmetries in species-specific physiological responses to climate change may alter the strength of interactions, such as those between predator and prey, which will have cascading effects on ecosystem structure. How foundation species and their interactions are affected by climate change will profoundly affect their community due to their dominance. I assessed the physiological responses of two common California rocky intertidal consumer–resource pairs across multiple trophic levels. I measured metabolic rates after four weeks of exposure to a range of nine pH levels (7.2–8.0) at two temperature levels (ambient, +4°C). At the lowest trophic level, I examined the effects of climate change on a primary producer foundation species, Silvetia compressa (golden rockweed), and its herbivore, Tegula eiseni, under differing upwelling regimes in early and late spring. Rockweed responded more to acidification than warming, decreasing photosynthetic rates in early spring and increasing rates during late spring. Their snail consumer, however, responded most strongly to temperature—increasing both respiration rates and calcification under warm conditions in late spring. In addition to species specific responses to climate stressors, the rockweed–snail pair had context-dependent responses based on background environmental conditions. Greater upwelling during late spring, combined with a younger snail population could explain differences in responses between early and late spring. Next, I examined asymmetries between a calcifying foundation species, Mytilus californianus, and its whelk predator, Nucella emarginata. Specifically, mussels were generally resistant to acute exposure to ocean warming and acidification, while whelks were highly sensitive to temperature. Whelks decreased their calcification, respiration, shell extension, and probability of drilling a mussel under warmer conditions. Across both experiments, I observed asymmetries in response to changes in pH and temperature between consumer and resource, which can shift ecosystems between bottom-up and top-down processes. Overall, I showed that mesopredators, such as herbivorous and carnivorous snails, appeared to be the most sensitive to changes in temperature relative to their foundation species prey. Climate change may reshape rocky intertidal communities by altering predation patterns on foundation species, which could either facilitate or threaten the survival of other associated species in a changing environment.
Continue reading ‘Asymmetric effects of acidification and warming on foundation species and their predators in the California rocky intertidal zone’Progressive changes in coral reef communities with increasing ocean acidification
Published 8 December 2025 Science ClosedTags: algae, BRcommunity, chemistry, community composition, corals, field, otherprocess, vents
Ocean acidification from increasing atmospheric CO2 is progressively affecting seawater chemistry, but predicting ongoing and near-future consequences for marine ecosystems is challenging without empirical field data. Here we quantify tropical coral reef benthic communities at 37 stations with varying exposure to submarine volcanic CO2 seeping, and determine the aragonite saturation state (ΩAr) where significant changes occur in situ. With declining ΩAr, reef communities displayed progressive retractions of most reef-building taxa and a proliferation in the biomass and cover of non-calcareous brown and red algae, without clear tipping points. The percent cover of all complex habitat-forming corals, crustose coralline algae (CCA) and articulate coralline Rhodophyta declined by over 50% as ΩAr levels declined from present-day to 2, and importantly, the cover of some of these groups was already significantly altered at an ΩAr of 3.2. The diversity of adult and juvenile coral also rapidly declined. We further quantitatively predict coral reef community metrics for the year 2100 for a range of emissions scenarios, especially shared socio-economic pathways SSP2-4.5 and SSP3-7.0. The response curves show that due to ocean acidification alone, reef states will directly depend on CO2 emissions, with higher emissions causing larger deviations from the reefs of today.
Continue reading ‘Progressive changes in coral reef communities with increasing ocean acidification’Dynamics of a coral reef system under climate change
Published 28 November 2025 Science ClosedTags: biological response, BRcommunity, communitymodeling, corals, echinoderms, modeling, multiple factors, temperature
Highlights
- It is established that a new a stochastic coral-starfish model with global warming and ocean acidification.
- It is revealed that the change in global warming has a decisive impact on the dominant position of corals and starfish.
- It is found that the variation of pH is able to destabilize coral-starfish interactions.
Abstract
The intensification of global warming and ocean acidification are important factors affecting coral reef degradation, however, their impact mechanisms on coral reef system are still unclear. In this paper, we study the dynamics of a stochastic coral-starfish model considering the factors of global warming and ocean acidification, where the stochastic environmental fluctuation is characterized by mean-reverting Ornstein-Uhlenbeck (OU) process. A key advantage of considering global warming and ocean acidification in coral reef systems is that it can accurately describe the dynamic mechanisms of coral-starfish interactions, providing a scientifically reliable theoretical basis for exploring the evolutionary succession of coral reef systems. The main purpose of this paper is to investigate how global warming and ocean acidification affect the dynamic mechanisms of coral reef systems in the presence and absence of stochastic disturbances. Mathematically, we mainly study the critical threshold conditions for the transcritical bifurcation, saddle-node bifurcation, and Hopf bifurcation of deterministic coral reef system, as well as the existence of ergodic stationary distribution, precise expressions of probability density function, persistent in the mean, and stochastic extinction dynamics in stochastic coral reef system, which in turn provide a theoretical basis for numerical simulations. Numerical analysis indicates that the variations of global warming and ocean acidification can generate a great influence on the coral-starfish dynamics with and without OU process. Significantly, it is found that coral growth dominates under the increasing global warming effect, while starfish growth dominates under the decreasing global warming effect in a randomly perturbed environment. Furthermore, the change of pH has capacity to destabilize coral-starfish interactions, while the intensified global warming can lead to the extinction of starfish. These findings may contribute to the studies of potential strategies for protecting coral reef ecosystems under the impact of climate change.
Continue reading ‘Dynamics of a coral reef system under climate change’The larva-Symbiodiniaceae association at risk: putative impacts of climate change on reproduction, dispersal, and recruitment in coral reefs
Published 24 November 2025 Science ClosedTags: biological response, BRcommunity, cnidaria, corals, mollusks, physiology, phytoplankton, porifera, reproduction, review
The relationship between invertebrates and Symbiodiniaceae dinoflagellates is the ecological foundation of diverse and productive coral reef ecosystems. Climate change-induced breakdown of this partnership, i.e., bleaching, is repeatedly driving widespread reef degradation. Thus, the future trajectory of this ecosystem depends on the reproduction and dispersal capacity of invertebrate-Symbiodiniaceae symbiosis. This review examines how climate change affects the biology of larvae from three invertebrate phyla—Porifera, Cnidaria, and Mollusca—that host Symbiodiniaceae, focusing on differences in symbiont transmission mode, symbiont location, and the larvae´s reliance on these associations. Due to limited research on Porifera and Mollusca hosts, most knowledge of larvae-Symbiodiniaceae associations stems from coral larvae patterns. The myriads of combinations of genetic and ecophysiologically distinct hosts and symbionts result in highly context-dependent responses to warming, but symbiotic larvae tend to be more susceptible to oxidative stress and show higher mortality than aposymbiotic larvae. While ocean acidification has little direct effect on the algal symbionts, it impacts larvae variably, especially calcifying larvae (e.g., mollusks), which suffer from impaired calcification and higher mortality. Climate change also impairs the reproductive processes of Symbiodiniaceae-bearing invertebrates, reducing gamete output, causing asynchronous spawning, and lowering larval survival. These effects will result in a persistent decline in recruitment with increased larval retention, consequently reducing reef connectivity and genetic diversity, thus weakening ecosystem resilience. This underscores the urgent need to hasten knowledge on larval ecology under climate change and the functional role of symbionts to better inform marine conservation planning and to incorporate larval ecology in the future predictions.
Continue reading ‘The larva-Symbiodiniaceae association at risk: putative impacts of climate change on reproduction, dispersal, and recruitment in coral reefs’Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta
Published 20 November 2025 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, molecular biology, mollusks, North Pacific, otherprocess, prokaryotes
The intestinal microflora, which is vital for nutrient absorption and immune regulation, can experience dysbiosis under environmental stress, potentially enhancing host susceptibility to pathogenic invasion. The impact of ocean acidification on bivalves is substantial, but its effects on their intestinal microflora remain poorly understood. To explore the impact of ocean acidification on the intestinal microflora of Sinonovacula constricta, this study used high-throughput 16S rRNA sequencing technology to investigate the variations in the intestinal microflora communities of S. constricta during ocean acidification across different time points. After exposure to ocean acidification, changes in the composition of the intestinal microflora of S. constricta were observed, with no significant difference in α-diversity between the acidified and control groups. The abundance of Proteobacteria in the acidification group increased, whereas that of Cyanobacteria decreased. The abundance of Firmicutes initially decreased and then increased. At the genus level, the relative abundance of Pseudomonas was lower than that in the control group, whereas the relative abundance of Photobacterium, Acinetobacter, and Enterobacter gradually increased. LEfSe analysis identified Serpens as the discriminative biomarker at 7 days of acidification, Enterobacteriales, Rhodobacteraceae, and Martvita at 14 days of acidification, and Serpens, Acidibacteria, and Aeromonadaceae at 35 days of acidification. Functional prediction analysis indicated significant stimulation in various metabolic pathways at different time points following acidification stress. Specifically, pathways involved in biosynthesis were significantly stimulated at 14 days of acidification, while those related to sucrose degradation were disrupted at 35 days. The results further indicated that ocean acidification stress can influence the intestinal microflora of S. constricta, but no severe dysbiosis or digestive system impairment was observed at the microbial level. This study provides new insights into the effects of ocean acidification on the intestinal microflora of marine bivalves.
Continue reading ‘Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta’Sediment topography enhances the response of coral reef carbonate sediment dissolution to ocean acidification
Published 13 November 2025 Science ClosedTags: annelids, biological response, BRcommunity, calcification, chemistry, community composition, laboratory, mollusks, otherprocess, primary production, respiration, sediment
The interaction between water flow and sediment topography (e.g., surface ripples) in shallow, permeable coral reef carbonate sediments establishes pressure gradients that increase the rate of sediment–water solute exchange relative to water flow along a flat bottom. It is unknown how this effect from surface ripples may modify the rate at which the sediment porewater is exposed to future chemical changes in the overlying water column, such as elevated pCO2 that is causing ocean acidification (OA). To address this question, this study used a series of 22-h incubations in flume aquaria with live permeable calcium carbonate sediment communities and examined the interactive effect of pCO2 (400 and 1000 µatm) and surface topography (flat and rippled sediments) on invertebrate infaunal activity, carbonate sediment microbial metabolism, and inorganic carbonate dissolution. Results show that the introduction of oxygen into flat sediments was largely driven by infaunal activity, whereas introduction of oxygen into rippled sediments was largely driven by physical flow processes. Rippled sediments exhibited rates of respiration and gross primary production that were ~ 45% and ~ 50% higher, respectively, than flat sediments. An increase in pCO2 shifted the sediments in the flat flumes from net calcifying to net dissolving, an effect that was amplified an additional ~ 60% in rippled sediments. These results suggest that current estimates of coral reef carbonate sediment calcification may be underestimating the dissolution response to OA where the carbonate sediment environment exhibits ripples in the topography.
Continue reading ‘Sediment topography enhances the response of coral reef carbonate sediment dissolution to ocean acidification’Impact of crustose coralline algae, ocean acidification, and ocean warming on larval pinto abalone settlement and juvenile survival
Published 11 November 2025 Science ClosedTags: algae, biological response, BRcommunity, communityMF, laboratory, mollusks, morphology, mortality, multiple factors, North Pacific, reproduction, temperature
Highlights
- Ocean acidification reduced pinto abalone settlement and survival in the hatchery.
- Ocean acidification is likely a greater threat than warming to Washington pinto abalone.
- Use of a natural settlement inducer improves abalone settlement and survival.
- Coralline algae may improve survival of pinto abalone under ocean acidification.
Abstract
Since 1994, Washington State (USA) has experienced a 97 % drop in the native pinto abalone population. Since 2007, conservation aquaculture initiatives have been underway to return the population to a self-sustaining level. Successful restoration, however, depends on both the ability to successfully raise juveniles in hatchery settings and the capacity of outplanted pinto abalone to survive and reproduce in the wild as threats of ocean acidification and warming continue to increase. Crustose coralline algae (CCA) can play an important role in restoration efforts by acting as natural inducers of larval settlement. Additionally, studies have shown that CCA can create a boundary layer with elevated pH, potentially providing a refuge for benthic species. We examined the settlement of pinto abalone under different environmental conditions (7.90 pH/14 °C (ambient), 7.90 pH/18 °C, 7.55 pH/14 °C; and 7.55 pH/18 °C) using two substrates: CCA-covered rocks and clean rocks with GABA (a chemical settlement inducer). Low pH negatively impacted larval settlement. Though settlement was higher with CCA than with GABA, this difference was not statistically significant. Juvenile survival was negatively impacted by low pH, but positively impacted by CCA presence, demonstrating the potential of CCA to increase juvenile pinto abalone survival and ameliorate the negative effects of low pH. Using CCA in hatchery culture and selecting sites with CCA cover for pinto abalone outplants may improve the efficiency of restoration in Washington.
Continue reading ‘Impact of crustose coralline algae, ocean acidification, and ocean warming on larval pinto abalone settlement and juvenile survival’Biogeochemical properties of shallow-water CO2 seeps on Himeshima Island and Showa Iwojima Island, Japan
Published 7 November 2025 Science ClosedTags: algae, biological response, BRcommunity, chemistry, community composition, field, North Pacific, otherprocess, vents
Volcanic gases erupt from the seafloor in several regions around Japan. Volcanological and geochemical gas seep studies have mainly focused on coastal shallow-water areas that are relatively accessible and important to human society. Shallow-water CO2 seeps are thought to foreshadow future marine environments that may develop if CO2 emissions are not drastically reduced. Thus, CO2 seeps provide important insights for assessing and projecting the impacts of ocean acidification on marine ecosystems. This study is the first to investigate two shallow-water CO2 seeps near Japan from the perspective of ocean acidification. We observed biotic transitions and reduced biodiversity around these CO2 seeps, as well as high CO2 concentrations, low pH, and low calcium carbonate saturation—conditions expected to occur by the end of this century unless anthropogenic CO2 emissions are significantly reduced. These results suggest that, from a marine life conservation perspective, it is essential to mitigate ocean acidification through substantial reductions in anthropogenic CO2. Shallow-water CO2 seeps serve as natural experimental sites that illustrate ocean acidification and its effects on marine ecosystems. Given that the shallow-water CO2 seeps examined in this study are both located in geoparks, study tours and ecotourism field trips should utilize these sites to enhance awareness of the consequences of ocean acidification and climate change.
Continue reading ‘Biogeochemical properties of shallow-water CO2 seeps on Himeshima Island and Showa Iwojima Island, Japan’Gut microbial community plasticity as a climate shield mediating sea cucumber resilience to ocean acidification and warming
Published 28 October 2025 Science ClosedTags: biological response, BRcommunity, community composition, echinoderms, laboratory, mesocosms, multiple factors, North Pacific, otherprocess, physiology, prokaryotes, temperature
Ocean acidification (OA) and ocean warming (OW) pose escalating threats to marine ecosystems, particularly to benthic organisms, such as sea cucumbers, that play pivotal roles in nutrient cycling and sediment health. Existing studies have mostly focused on the physiological responses of sea cucumbers, yet overlooked the critical roles of both gut microbial communities and metabolites in the host’s responses under environmental stress. Herein, a mesocosm experiment was constructed and analyzed by using integrated gut microbiome and metabolomics approaches to investigate the responses of sea cucumbers Apostichopus japonicus to OA and OW. Results revealed that microbial community plasticity underpins holobiont adaptation, with warming restructuring gut microbiota toward thermotolerant taxa, whereas acidification enriches alkalinity-modulating Rhodobacteraceae and Halioglobus sp.. Metabolomic profiling identified 43 amino acid derivatives that exhibit significantly increased concentrations in the OA and OW groups. These derivatives include upregulated N-methyl-aspartic acid and γ-glutamyl peptides, which stabilize macromolecules and enhance redox homeostasis. Conversely, antioxidative metabolites, such as ergothioneine and L-homocystine, are suppressed, reflecting trade-offs between energy allocation and stress protection. In OW group, the antioxidant synthesis pathway is shifted to energy metabolism related to heat tolerance, whereas in OA group, energy is preferentially used for alkalinity regulation pathways rather than oxidative stress defense. Changes in microbial community structure mechanistically explain the trends in metabolite concentrations, as the proliferation of Vibrio spp. in the OW group drives lysine catabolism, leading to a significant increase in L-saccharopine levels. The reduction of Bacteroidetes in the OA group is correlated with the downregulation of L-homocystine, suggesting that pH-driven microbial interactions are disrupted. These findings demonstrate that gut microbiota reconfigure community structure and metabolic landscapes to buffer hosts against climate stress synergies, highlighting the importance of microbiome-mediated resilience in marine ecosystems under global climate change.
Continue reading ‘Gut microbial community plasticity as a climate shield mediating sea cucumber resilience to ocean acidification and warming’Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification
Published 27 October 2025 Science ClosedTags: abundance, biological response, BRcommunity, field, mollusks, North Pacific, otherprocess, performance, review, zooplankton
The pteropod Limacina helicina has become an important bioindicator for the impacts of ocean acidification on marine ecosystems, yet its vertical distribution and diel vertical migration (DVM) patterns remain poorly understood. Understanding these behaviours is critical to accurately predict the risks of ocean acidification to pteropods since the depth ranges they inhabit strongly influence their exposure to water corrosive to aragonite shells (i.e. ΩAr <1), given the natural vertical gradients in pH and ΩAr. To resolve the vertical distribution of L. helicina, we utilized an existing dataset consisting of 179 vertically stratified zooplankton net tows from the Northeast Pacific spanning 1983–2019. Using conventional observational analyses and Bayesian statistical models, we determine and compare the average day and night vertical distributions of two size ranges of L. helicina, plus those of the strong vertical migrator euphausiid Euphausia pacifica and a non-migratory control group of mollusc larvae. We show that the average day and night vertical distributions and mean depths of L. helicina do not differ and closely match those of the non-migratory control, indicating that L. helicina does not perform DVM in this region. Typical mean depths of L. helicina are ∼50–70 m, with ≥ 75% of the population occupying the upper ∼100 m, and ≥ 50% being found in the upper ∼50 m, regardless of body size and time of day. Given the typical shape of ΩAr profiles in the ocean, we estimate that pteropod exposure to low ΩAr may be overestimated if calculated using the standard vertically integrated approach (i.e. a homogeneous depth distribution) as opposed to our depth-resolved vertical distribution.
Continue reading ‘Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification’Dulse seaweed Devaleraea mollis mitigates effects of ocean acidification on larval Pacific oysters Magallana gigas
Published 21 October 2025 Science ClosedTags: algae, biological response, BRcommunity, chemistry, laboratory, mitigation, molecular biology, mollusks, morphology, North Pacific, reproduction
Ocean acidification (OA), driven by upwelling and climate change, can negatively impact the ecological and economic contribution of marine calcifiers along coasts worldwide. OA interferes with calcification, particularly in early life stages, causing mortality, reduced growth, and morphological abnormalities in shellfish such as the Pacific oyster (Magallana gigas). This issue is gaining traction as climate change intensifies, placing shellfish in wild populations and farms alike at risk. Macroalgal photosynthesis by seaweed such as Pacific dulse (Devaleraea mollis) has been proposed to provide small-scale OA refuges, but few controlled experiments quantify this effect, and none have focused on larval shellfish. This study examines the potential for Pacific dulse to mitigate OA and its effects on Pacific oyster larvae. Under continuous light for 23 days, the presence of dulse resulted in a consistent increase in seawater aragonite saturation state by 0.1-0.9, and pH by 0.1-0.5 units, depending on OA condition. Newly fertilized oysters were reared for 48 hours in the absence or presence of dulse under treatments corresponding to ambient (pH 7.8, 450 μatm CO₂), future OA (pH 7.6, 800 μatm CO₂), and future OA + upwelling (pH 7.4, 1200 μatm CO₂) seawater conditions. Dulse fully mitigated OA effects on larval size that ranged from decreases of 5% to 10%. Under the future OA + upwelling treatment, dulse presence reduced the odds of underdeveloped oyster larvae at 14 hours post fertilization (hpf), and larvae with hinge abnormalities at 24 hpf, by over 50%. Dulse induced minor changes to immune response gene expression at 48 hpf. These findings highlight the benefits of seaweed when adjacent to organisms sensitive to OA. These findings will be particularly useful for shellfish farms, habitat restoration efforts, and ocean stewardship practices as a potential mitigation strategy under the changing climate.
Continue reading ‘Dulse seaweed Devaleraea mollis mitigates effects of ocean acidification on larval Pacific oysters Magallana gigas’Oxidative stress and histological alterations in coral Briareum violacea co-exposed to ocean acidification and microplastic stressors
Published 17 October 2025 Science ClosedTags: biological response, BRcommunity, corals, laboratory, morphology, multiple factors, North Pacific, performance, physiology, phytoplankton, plastics
Ocean acidification and microplastic pollution are two major stressors threatening coral health, yet their combined impacts and underlying mechanisms remain poorly understood. This study investigated the combined effects of ocean acidification and microplastics exposure to coral health. Briareum violacea was exposed to pH at 7.7, 7.5, and 7.3 combined with polyethylene microplastic (PE-MP; 50 mg/L) for 21 days. Polyp length and behavioral adaptability were monitored daily, while coral was collected on days 14 and 21 to assess Symbiodiniaceae density, antioxidant enzyme activity, and histopathological alterations. Results showed that combined exposure to different pH (7.7, 7.5, and 7.3) and PE-MP significantly impaired coral condition, reduced polyp length and Symbiodiniaceae density, along with intensified oxidative stress and tissue damage compared to single stressors. These findings underscore coral vulnerability under combined stressors, emphasizing the necessity for future research to address long-term ecological consequences and resilience mechanisms in coral reef ecosystems.
Continue reading ‘Oxidative stress and histological alterations in coral Briareum violacea co-exposed to ocean acidification and microplastic stressors’The bacterial community composition of American lobster (Homarus americanus) embryos and recently hatched larvae held under different temperature and acidification conditions
Published 16 October 2025 Science ClosedTags: biological response, BRcommunity, community composition, crustaceans, laboratory, molecular biology, multiple factors, North Atlantic, otherprocess, prokaryotes, reproduction, temperature
Previous research investigating the microbial community of American lobster embryos has long led researchers to believe this habitat comprised only a select few bacterial taxa. However, using 16S rRNA gene sequencing, we show this community to be more diverse than previously thought. We investigated how the bacterial communities of American lobster embryos and larvae change over embryogenesis and hatching in response to two environmental variables. Ovigerous female lobsters caught from Maine and Massachusetts were held under varying temperature and pH regimes that approximated observed and predicted warming and ocean acidification conditions in the Gulf of Maine (GoM) and Southern New England (SNE). The bacterial microbiome associated with the lobster embryos was quantified from two-time points during the experiment, and larvae were collected within 12 hours of hatching. Alpha diversity increased with each life history stage, and embryo and larvae microbiomes shared little community overlap with that in the surrounding tank water. Neither environmental conditions nor lobster origin significantly altered bacterial communities, with life history stage driving alpha and beta diversity. Embryos and larvae shared three core bacterial members identified as members of the genera Rubritalea, Delftia, and Stenotrophomonas. American lobster embryos and larvae appear to have a highly selective microhabitat for bacteria that is not altered by environmental conditions. This leads us to wonder what role the microbiome may have on a developing lobster, and where the microbiome is originating if not from the surrounding seawater.
Continue reading ‘The bacterial community composition of American lobster (Homarus americanus) embryos and recently hatched larvae held under different temperature and acidification conditions’Environmental conditions and carbonate chemistry variability influencing coral reef composition along the Pacific coast of Costa Rica
Published 10 October 2025 Science ClosedTags: biogeochemistry, BRcommunity, chemistry, community composition, corals, field, North Pacific, otherprocess
Coral reef development is influenced by a wide variety of factors, including temperature, salinity, nutrient concentrations, and carbonate chemistry. Studies focusing on physicochemical drivers of coral reef distribution and composition in the Eastern Tropical Pacific (ETP) are scarce, and carbonate chemistry and nutrient data for this region are limited. This study measured coral reef composition and physicochemical parameters along the Pacific coast of Costa Rica, over a one-year period at three locations: Santa Elena and Matapalo in the north, and Parque Nacional Marino Ballena in the south. Our results show high seasonal and spatial variability of physicochemical conditions with significant differences mainly explained by inorganic nutrient concentrations, with driving processes also having a strong influence on the variability of carbonate chemistry parameters. Coastal upwelling is the main driver of the seasonal variability in Santa Elena. Comparison of seasonal dissimilarity within locations confirms the presence of a geographical gradient, with stronger influence of the upwelling in Santa Elena relative to Matapalo, where several parameters displayed a lower seasonality and a carbonate system that supports reef development throughout the year. Conversely, in Marino Ballena the river discharges during rainy season exerted a strong control on the seasonal variability. The integrated analysis of coral reef composition and physicochemical parameters suggests that in addition to inorganic nutrients carbonate chemistry also plays a key role in coral distribution. Analyzing the spatial distribution of the main reef builders provides insights into the species-specific tolerance to varying conditions. Pavona clavus is widely distributed in both the northern and southern locations, suggesting that this massive coral is very tolerant to the high variability of physicochemical conditions. The dominant corals in the north (Pavona gigantea and Pocillopora spp.) are highly tolerant to nutrient-enriched cold waters with low aragonite saturation, while one of the main reef-builders in southern locations (Porites cf. lobata) cope better with low salinity, low aragonite saturation and low light intensity caused by river discharges. Understanding the preferences of individual coral species at our study locations can shed light on the environmental factors driving coral reef distribution in other locations of the ETP.
Continue reading ‘Environmental conditions and carbonate chemistry variability influencing coral reef composition along the Pacific coast of Costa Rica’Coral calcification resistance to acidification is physiologically linked with complex intracellular calcium ion dynamics between host and symbiont cells
Published 8 October 2025 Science ClosedTags: biological response, BRcommunity, calcification, corals, laboratory, molecular biology, North Pacific, phytoplankton
Coral calcification is a highly complex process with numerous caveats regarding the mechanisms that dictate productivity and function. Ion homeostasis, however, is the foremost physiological process unanimously shared among Scleractinia and essential for calcification. Consequently, changes to the seawater environment may elicit adverse effects on ion homeostasis. With increasing climate shifts, the physicochemical regime of our global ocean is changing rapidly. Responses of coral calcification to physicochemical change prevail in having little uniformity on an unambiguous mechanism of resistance. Therefore, this study chose a relatively tolerant Hawaiian coral, Montipora capitata to focus efforts on understanding ion homeostasis under chemical seawater manipulation designed to limit calcification. Results indicate a physiological hormesis (two-phase adaptive response) of overall coral host gene expression that was not shared with algal symbionts and decoupled from calcification rates. The sole ion homeostatic mechanism shown was calcium ion regulation by both the host and symbiont cells. Calcium ion homeostasis was also found to be mechanistically different between winter and summer seasons. Thus, potentially indicating complex interactions between host and symbiont cells, as well as the ability for M. capitata to promote calcification under stress. Putatively synthesized here are the physiological cascades and mechanisms of resistance to environmental triggers of acidosis and seasonal change. This work provides insight into linking calcium ion homeostasis with coral resistance and aims to suggest this mechanism as biomolecular indicator used in future assessments to compare tolerance.
Continue reading ‘Coral calcification resistance to acidification is physiologically linked with complex intracellular calcium ion dynamics between host and symbiont cells’
