Ocean acidification from increasing atmospheric CO2 is progressively affecting seawater chemistry, but predicting ongoing and near-future consequences for marine ecosystems is challenging without empirical field data. Here we quantify tropical coral reef benthic communities at 37 stations with varying exposure to submarine volcanic CO2 seeping, and determine the aragonite saturation state (ΩAr) where significant changes occur in situ. With declining ΩAr, reef communities displayed progressive retractions of most reef-building taxa and a proliferation in the biomass and cover of non-calcareous brown and red algae, without clear tipping points. The percent cover of all complex habitat-forming corals, crustose coralline algae (CCA) and articulate coralline Rhodophyta declined by over 50% as ΩAr levels declined from present-day to 2, and importantly, the cover of some of these groups was already significantly altered at an ΩAr of 3.2. The diversity of adult and juvenile coral also rapidly declined. We further quantitatively predict coral reef community metrics for the year 2100 for a range of emissions scenarios, especially shared socio-economic pathways SSP2-4.5 and SSP3-7.0. The response curves show that due to ocean acidification alone, reef states will directly depend on CO2 emissions, with higher emissions causing larger deviations from the reefs of today.
Continue reading ‘Progressive changes in coral reef communities with increasing ocean acidification’Posts Tagged 'otherprocess'
Progressive changes in coral reef communities with increasing ocean acidification
Published 8 December 2025 Science ClosedTags: algae, BRcommunity, chemistry, community composition, corals, field, otherprocess, vents
Ocean acidification alters phytoplankton diversity and community structure in the coastal water of the East China Sea
Published 5 December 2025 Science ClosedTags: biogeochemistry, biological response, community composition, laboratory, mesocosms, North Pacific, otherprocess, phytoplankton, primary production, respiration
Anthropogenic CO2 emissions and their continuous dissolution into seawater lead to seawater pCO2 rise and ocean acidification (OA). Phytoplankton groups are known to be differentially affected by carbonate chemistry changes associated with OA in different regions of contrasting physical and chemical features. To explore responses of phytoplankton to OA in the Chinese coastal waters, we conducted a mesocosm experiment in a eutrophic bay of the southern East China Sea under ambient (410 μatm, AC) and elevated (1000 μatm, HC) pCO2 levels. The HC stimulated phytoplankton growth and primary production during the initial nutrient-replete stage, while the community diversity and evenness were reduced during this stage due to the rapid nutrient consumption and diatom blooms, and the subsequent shift from diatoms to hetero-dinoflagellates led to a decline in primary production during the mid and later phases under nutrient depletion. Such suppression of diatom-to-dinoflagellate succession occurred with enhanced remineralization of organic matter under the HC conditions, with smaller phytoplankton becoming dominant for the sustained primary production. Our findings indicate that, the impacts of OA on phytoplankton diversity in the coastal water of the southern East China Sea depend on availability of nutrients, with primary productivity and biodiversity of phytoplankton reduced in the eutrophicated coastal water.
Continue reading ‘Ocean acidification alters phytoplankton diversity and community structure in the coastal water of the East China Sea’Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta
Published 20 November 2025 Science ClosedTags: biological response, BRcommunity, community composition, laboratory, molecular biology, mollusks, North Pacific, otherprocess, prokaryotes
The intestinal microflora, which is vital for nutrient absorption and immune regulation, can experience dysbiosis under environmental stress, potentially enhancing host susceptibility to pathogenic invasion. The impact of ocean acidification on bivalves is substantial, but its effects on their intestinal microflora remain poorly understood. To explore the impact of ocean acidification on the intestinal microflora of Sinonovacula constricta, this study used high-throughput 16S rRNA sequencing technology to investigate the variations in the intestinal microflora communities of S. constricta during ocean acidification across different time points. After exposure to ocean acidification, changes in the composition of the intestinal microflora of S. constricta were observed, with no significant difference in α-diversity between the acidified and control groups. The abundance of Proteobacteria in the acidification group increased, whereas that of Cyanobacteria decreased. The abundance of Firmicutes initially decreased and then increased. At the genus level, the relative abundance of Pseudomonas was lower than that in the control group, whereas the relative abundance of Photobacterium, Acinetobacter, and Enterobacter gradually increased. LEfSe analysis identified Serpens as the discriminative biomarker at 7 days of acidification, Enterobacteriales, Rhodobacteraceae, and Martvita at 14 days of acidification, and Serpens, Acidibacteria, and Aeromonadaceae at 35 days of acidification. Functional prediction analysis indicated significant stimulation in various metabolic pathways at different time points following acidification stress. Specifically, pathways involved in biosynthesis were significantly stimulated at 14 days of acidification, while those related to sucrose degradation were disrupted at 35 days. The results further indicated that ocean acidification stress can influence the intestinal microflora of S. constricta, but no severe dysbiosis or digestive system impairment was observed at the microbial level. This study provides new insights into the effects of ocean acidification on the intestinal microflora of marine bivalves.
Continue reading ‘Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta’Integrative analysis of coral plasticity and adaptations reveals key proteins driving resilience to changes in ocean carbonate chemistry
Published 14 November 2025 Science ClosedTags: adaptation, biological response, calcification, corals, laboratory, molecular biology, otherprocess, physiology
Understanding how corals adapt to changes in seawater carbonate chemistry is crucial for developing effective coral conservation strategies. Research to date has mostly focused on short-term experiments, overlooking long-term evolutionary effects. Here, we investigated the link between short-term stress responses and long-term genetic adaptations in the coral species Porites pukoensis through experiments under varying CO2 and alkalinity conditions. Our results showed that alkalinity enrichment significantly increased coral calcification rates by 35%-45% compared to high CO2 treatment, highlighting the potential of alkalinity enrichment to mitigate acidification impacts. Corals modulated relative expression levels of basic and acidic proteins in response to changes in seawater carbonate chemistry in the stress experiments. Genomic data revealed that this mechanism has been evolutionarily fixed in various organisms adapting to seawater carbonate chemistry. Additionally, both experimental and genomic results showed that extracellular matrix proteins, like collagen with von Willebrand factor type A domain, were modified in response to distinct carbonate environments. Molecular dynamics simulations and in-vitro experiments demonstrated that the structural stability of these proteins contributes to coral resilience under acidified conditions. This study established an integrated framework combining stress experiments, multi-omics analyses, molecular simulations, and in-vitro validation to identify key proteins involved in coral adaptation to acidification.
Continue reading ‘Integrative analysis of coral plasticity and adaptations reveals key proteins driving resilience to changes in ocean carbonate chemistry’Sediment topography enhances the response of coral reef carbonate sediment dissolution to ocean acidification
Published 13 November 2025 Science ClosedTags: annelids, biological response, BRcommunity, calcification, chemistry, community composition, laboratory, mollusks, otherprocess, primary production, respiration, sediment
The interaction between water flow and sediment topography (e.g., surface ripples) in shallow, permeable coral reef carbonate sediments establishes pressure gradients that increase the rate of sediment–water solute exchange relative to water flow along a flat bottom. It is unknown how this effect from surface ripples may modify the rate at which the sediment porewater is exposed to future chemical changes in the overlying water column, such as elevated pCO2 that is causing ocean acidification (OA). To address this question, this study used a series of 22-h incubations in flume aquaria with live permeable calcium carbonate sediment communities and examined the interactive effect of pCO2 (400 and 1000 µatm) and surface topography (flat and rippled sediments) on invertebrate infaunal activity, carbonate sediment microbial metabolism, and inorganic carbonate dissolution. Results show that the introduction of oxygen into flat sediments was largely driven by infaunal activity, whereas introduction of oxygen into rippled sediments was largely driven by physical flow processes. Rippled sediments exhibited rates of respiration and gross primary production that were ~ 45% and ~ 50% higher, respectively, than flat sediments. An increase in pCO2 shifted the sediments in the flat flumes from net calcifying to net dissolving, an effect that was amplified an additional ~ 60% in rippled sediments. These results suggest that current estimates of coral reef carbonate sediment calcification may be underestimating the dissolution response to OA where the carbonate sediment environment exhibits ripples in the topography.
Continue reading ‘Sediment topography enhances the response of coral reef carbonate sediment dissolution to ocean acidification’Mothers know best: maternal signaling boosts larval resilience under ocean acidification conditions
Published 12 November 2025 Science ClosedTags: adaptation, biological response, fisheries, molecular biology, mollusks, morphology, mortality, otherprocess, physiology, reproduction
Highlights
- Environmental priming effectively rescued larval phenotype under OA conditions.
- Egg ‘omics were investigated to elucidate mechanism of priming across generations.
- Clam egg lipidomes were largely unperturbed by maternal low-pH exposure.
- Differentially expressed genes were identified in eggs of low-pH primed clams.
Abstract
Bivalve aquaculture is a growing sector worldwide, producing sustainable animal protein to meet growing demand from consumers. Yet, the industry remains vulnerable to environmental changes that can impact their product across life stages, especially at the larval stage. Parental priming, or the exposure of broodstock to adverse environmental conditions as they undergo gametogenesis, holds promise as a method to increase resilience in bivalve offspring. We exposed Manila clam (Ruditapes philippinarum) broodstock to low pH conditions (pH 7.4 for 78 days during gametogenesis). Larvae were produced from primed (low pH) and unprimed (ambient pH) broodstock and exposed to ambient or low pH conditions in a full factorial design. Larval phenotype in response to low pH was partially rescued by broodstock priming: larvae from low pH-exposed broodstock had better survival and growth than larvae from broodstock held under ambient conditions. Clam egg lipidomic and transcriptomic analyses were performed to determine the physiological differences associated with broodstock environmental conditions. Egg lipid abundance profiles were not significantly different between parental treatments. The egg transcriptome revealed 48 differentially expressed transcripts associated with parental environmental conditions. These genes are involved in important processes for early larval physiology, including metabolism, cell cycle, and transcriptional regulation. Broodstock clams were minimally impacted by their exposure to low pH for 78 days, however we show here that subtle maternal signals may contribute to the vastly improved larval performance observed under low pH conditions.
Continue reading ‘Mothers know best: maternal signaling boosts larval resilience under ocean acidification conditions’Biogeochemical properties of shallow-water CO2 seeps on Himeshima Island and Showa Iwojima Island, Japan
Published 7 November 2025 Science ClosedTags: algae, biological response, BRcommunity, chemistry, community composition, field, North Pacific, otherprocess, vents
Volcanic gases erupt from the seafloor in several regions around Japan. Volcanological and geochemical gas seep studies have mainly focused on coastal shallow-water areas that are relatively accessible and important to human society. Shallow-water CO2 seeps are thought to foreshadow future marine environments that may develop if CO2 emissions are not drastically reduced. Thus, CO2 seeps provide important insights for assessing and projecting the impacts of ocean acidification on marine ecosystems. This study is the first to investigate two shallow-water CO2 seeps near Japan from the perspective of ocean acidification. We observed biotic transitions and reduced biodiversity around these CO2 seeps, as well as high CO2 concentrations, low pH, and low calcium carbonate saturation—conditions expected to occur by the end of this century unless anthropogenic CO2 emissions are significantly reduced. These results suggest that, from a marine life conservation perspective, it is essential to mitigate ocean acidification through substantial reductions in anthropogenic CO2. Shallow-water CO2 seeps serve as natural experimental sites that illustrate ocean acidification and its effects on marine ecosystems. Given that the shallow-water CO2 seeps examined in this study are both located in geoparks, study tours and ecotourism field trips should utilize these sites to enhance awareness of the consequences of ocean acidification and climate change.
Continue reading ‘Biogeochemical properties of shallow-water CO2 seeps on Himeshima Island and Showa Iwojima Island, Japan’Elevated carbon dioxide does not increase macroalgal community photosynthesis
Published 4 November 2025 Science ClosedTags: algae, biological response, community composition, field, North Pacific, otherprocess, photosynthesis, vents
Ocean acidification, driven by rising atmospheric carbon dioxide levels, has impacts on marine ecosystems. While elevated carbon dioxide concentrations have the potential to enhance Blue Carbon fixation and storage, the response of community photosynthesis in macroalgal-dominated ecosystems remains poorly understood. Here, we investigated the effects of elevated carbon dioxide on macroalgal communities using volcanic carbon dioxide vents as a natural analogue of ocean acidification. Net community photosynthesis was assessed using chambers positioned on the seafloor as well as water mass dynamics monitoring. Despite a shift in algal community composition, only minimal differences in net community photosynthesis were observed between reference and high carbon dioxide sites. The high carbon dioxide site had a lower abundance of algal species with carbon dioxide concentrating mechanisms, based on δ13C isotope measurements. Carbon dioxide concentrating mechanisms facilitate photosynthesis under present-day levels of carbon dioxide in seawater, resulting in a negligible effect of elevated carbon dioxide on macroalgal community photosynthesis. These results challenge the assumption that ocean acidification will enhance Blue Carbon uptake and storage, necessitating a reevaluation of this perspective.
Continue reading ‘Elevated carbon dioxide does not increase macroalgal community photosynthesis’Effects of ocean acidification on fatty acid composition in the Antarctic snail Neobuccinum eatoni
Published 31 October 2025 Science ClosedTags: adaptation, Antarctic, biological response, laboratory, mollusks, otherprocess, physiology
Introduction: Ocean acidification (OA), resulting from the absorption of increasing atmospheric CO2 by the oceans, represents a major threat to marine organisms. Despite growing concern, the biochemical responses of Antarctic species to OA remain poorly understood.
Methods: This study investigated the impact of OA (pH 7.70 ± 0.09) on the fatty acid (FA) composition of the Antarctic snail Neobuccinum eatoni over a two-month experimental period (December 2015–March 2016). Fatty acid profiles were analyzed in multiple tissues to assess potential alterations induced by low-pH (LpH) conditions.
Results: Significant tissue-specific changes in FA composition were detected, particularly in the mantle and gill. Under LpH exposure, notable modifications occurred in long-chain polyunsaturated fatty acids (LC-PUFAs) such as 22:5n-3, 22:6n-3, and 24:5n-6. Elevated LC-PUFA levels in the mantle suggested a compensatory response to oxidative stress, while shifts in the n-3/n-6 ratios in the gill pointed to potential alterations in immune and anti-inflammatory functions.
Discussion: Indicators of homeoviscous adaptation (HVA), including PUFA/SFA ratios and mean chain length (MCL), revealed biochemical strategies used by N. eatoni to maintain membrane fluidity under acidified conditions. This study provides the first evidence of FA-based responses to elevated pCO₂ in an Antarctic gastropod, highlighting the potential of fatty acids as sensitive biomarkers of physiological adaptation to environmental stressors.
Continue reading ‘Effects of ocean acidification on fatty acid composition in the Antarctic snail Neobuccinum eatoni’The negative responses and acclimation mechanisms of Neopyropia yezoensis conchocelis filaments to short- and long-term ocean acidification
Published 30 October 2025 Science ClosedTags: adaptation, algae, biological response, growth, laboratory, molecular biology, North Pacific, otherprocess, photosynthesis, physiology
Background
Ocean acidification (OA) significantly alters the carbonate chemistry of seawater, leading to a decrease of seawater pH to impact the physiological and biochemical processes of those intertidal macroalgae. Previous studies have focused on the response of macroalgae to OA at thallus stage, while the effects at filamentous stage remain insufficiently explored.
Results
This study investigated the physiological-biochemical and molecular mechanisms of the filamentous conchocelis stage (the diploid sporophyte) of Neopyropia yezoensis responding to short- (5 days) and long-term (20 days) OA (2000 ppm CO2, pH 7.53). The results showed that short-term OA rapidly inhibited the growth and photosynthesis, suppressed chlorophyll synthesis and nitrogen assimilation, and down-regulated genes associated with photosynthesis, Calvin cycle, and carbohydrate metabolism of N. yezoensis conchocelis filaments. However, N. yezoensis conchocelis filaments showed acclimation strategies under long-term OA, in terms of metabolic reorganization, prioritizing stress tolerance over growth. Further weighted gene co-expression network analysis (WGCNA) based on the metabolomic and transcriptomic results under long-term OA showed that the strategy was manifested by the accumulation of soluble sugars as osmolytes, lipid β-oxidation compensating for energy deficits, and H+ extrusion mediated via ABC transporters.
Conclusions
This study suggested time-depended responses of N. yezoensis conchocelis filaments to OA, proving the pronounced negative effects of OA on N. yezoensis conchocelis filaments, revealing N. yezoensis conchocelis filaments could acclimate to long-term OA by resource reallocation. These findings provide new insight into the survival of N. yezoensis conchocelis filaments under OA, and facilitate the development of technologies and breeding strategies for improved acidification tolerance in N. yezoensis.
Continue reading ‘The negative responses and acclimation mechanisms of Neopyropia yezoensis conchocelis filaments to short- and long-term ocean acidification’Gut microbial community plasticity as a climate shield mediating sea cucumber resilience to ocean acidification and warming
Published 28 October 2025 Science ClosedTags: biological response, BRcommunity, community composition, echinoderms, laboratory, mesocosms, multiple factors, North Pacific, otherprocess, physiology, prokaryotes, temperature
Ocean acidification (OA) and ocean warming (OW) pose escalating threats to marine ecosystems, particularly to benthic organisms, such as sea cucumbers, that play pivotal roles in nutrient cycling and sediment health. Existing studies have mostly focused on the physiological responses of sea cucumbers, yet overlooked the critical roles of both gut microbial communities and metabolites in the host’s responses under environmental stress. Herein, a mesocosm experiment was constructed and analyzed by using integrated gut microbiome and metabolomics approaches to investigate the responses of sea cucumbers Apostichopus japonicus to OA and OW. Results revealed that microbial community plasticity underpins holobiont adaptation, with warming restructuring gut microbiota toward thermotolerant taxa, whereas acidification enriches alkalinity-modulating Rhodobacteraceae and Halioglobus sp.. Metabolomic profiling identified 43 amino acid derivatives that exhibit significantly increased concentrations in the OA and OW groups. These derivatives include upregulated N-methyl-aspartic acid and γ-glutamyl peptides, which stabilize macromolecules and enhance redox homeostasis. Conversely, antioxidative metabolites, such as ergothioneine and L-homocystine, are suppressed, reflecting trade-offs between energy allocation and stress protection. In OW group, the antioxidant synthesis pathway is shifted to energy metabolism related to heat tolerance, whereas in OA group, energy is preferentially used for alkalinity regulation pathways rather than oxidative stress defense. Changes in microbial community structure mechanistically explain the trends in metabolite concentrations, as the proliferation of Vibrio spp. in the OW group drives lysine catabolism, leading to a significant increase in L-saccharopine levels. The reduction of Bacteroidetes in the OA group is correlated with the downregulation of L-homocystine, suggesting that pH-driven microbial interactions are disrupted. These findings demonstrate that gut microbiota reconfigure community structure and metabolic landscapes to buffer hosts against climate stress synergies, highlighting the importance of microbiome-mediated resilience in marine ecosystems under global climate change.
Continue reading ‘Gut microbial community plasticity as a climate shield mediating sea cucumber resilience to ocean acidification and warming’Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification
Published 27 October 2025 Science ClosedTags: abundance, biological response, BRcommunity, field, mollusks, North Pacific, otherprocess, performance, review, zooplankton
The pteropod Limacina helicina has become an important bioindicator for the impacts of ocean acidification on marine ecosystems, yet its vertical distribution and diel vertical migration (DVM) patterns remain poorly understood. Understanding these behaviours is critical to accurately predict the risks of ocean acidification to pteropods since the depth ranges they inhabit strongly influence their exposure to water corrosive to aragonite shells (i.e. ΩAr <1), given the natural vertical gradients in pH and ΩAr. To resolve the vertical distribution of L. helicina, we utilized an existing dataset consisting of 179 vertically stratified zooplankton net tows from the Northeast Pacific spanning 1983–2019. Using conventional observational analyses and Bayesian statistical models, we determine and compare the average day and night vertical distributions of two size ranges of L. helicina, plus those of the strong vertical migrator euphausiid Euphausia pacifica and a non-migratory control group of mollusc larvae. We show that the average day and night vertical distributions and mean depths of L. helicina do not differ and closely match those of the non-migratory control, indicating that L. helicina does not perform DVM in this region. Typical mean depths of L. helicina are ∼50–70 m, with ≥ 75% of the population occupying the upper ∼100 m, and ≥ 50% being found in the upper ∼50 m, regardless of body size and time of day. Given the typical shape of ΩAr profiles in the ocean, we estimate that pteropod exposure to low ΩAr may be overestimated if calculated using the standard vertically integrated approach (i.e. a homogeneous depth distribution) as opposed to our depth-resolved vertical distribution.
Continue reading ‘Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification’Seasonal and interannual variability of Atlantidae heteropods along the west coast of Baja California, Mexico
Published 23 October 2025 Science ClosedTags: biological response, chemistry, community composition, field, mollusks, North Pacific, otherprocess, zooplankton
Highlights
- Atlantid species richness was higher in winter than in spring.
- Maximum species diversity was associated with the 2013–2016 anomalous warm period.
- Distribution associated with seawater masses, hypoxia, and aragonite saturation.
- Atlantid species are potential biological indicators of environmental changes.
Abstract
The Atlantidae are holoplanktonic gastropods with aragonitic shells that inhabit the epipelagic habitat primarily in tropical and subtropical oceans, as well as in certain transitional and temperate regions, such as the California Current System. However, there is limited knowledge about how their diversity, distribution, and abundance respond to environmental changes over different time scales. The strongest seasonal changes of zooplankton species composition and environmental conditions in the southern California Current System occur between winter and spring. El Niño Southern Oscillation and marine heat waves are two additional environmental change drivers of interannual scale. Our aim was to infer the effect of the seasonal (winter-spring) and interannual (2012–2016) environmental variability on the diversity, distribution, and abundance of the Atlantidae species assemblage along the Pacific coast off the Baja California peninsula, Mexico. Atlantidae diversity was higher during winters than during springs. Their horizontal distribution recorded during winter was statistically correlated with temperature, salinity, and the seawater masses distribution, and during spring was correlated with the depth of hypoxic conditions (<60 μmol O2/kg oxyline) and the depth of Ω aragonite saturation horizon. Atlanta californiensis was the most abundant species, mainly during spring and its relative abundance decreased during anomalously warm periods, while tropical/subtropical species showed an opposite abundance pattern. The maximum species richness was associated with the 2013–2015 marine heat wave and El Niño 2015–2016 events, when tropical species were observed in the study area. Differences in the species community structure, their response to Ω aragonite undersaturated waters and hypoxia, and their seawater mass affinity showed that atlantids are useful biological indicators of environmental changes, ocean acidification, and deoxygenation conditions.
Continue reading ‘Seasonal and interannual variability of Atlantidae heteropods along the west coast of Baja California, Mexico’DNA methylation plasticity drives copepod resilience to coastal high pCO2 and cadmium pollution under multigenerational exposure
Published 20 October 2025 Science ClosedTags: adaptation, biological response, crustaceans, laboratory, metals, molecular biology, mortality, multiple factors, North Pacific, otherprocess, reproduction, zooplankton
Highlights
- Fluctuating acidification caused the most Cd multigenerational toxicity in copepods.
- The adverse effects of acidification and Cd tended to intensify during F1-F3.
- The copepods potentially adapted to combined exposure in F4.
- DNA hypomethylation rendered copepods presenting the adaptive potential.
ABSTRACT
The vast majority of coastal organisms have been facing multigenerational scenarios of fluctuatingly high pCO2 and Cd pollution in their natural habitats. However, the adaptive capacity of these organisms to such combined stressors and the underlying mechanisms remain poorly understood. In this study, we conducted a multigenerational experiment (F1-F4) to investigate the adaptive responses of the marine copepod Tigriopus japonicus to combined fluctuatingly high pCO2 and Cd exposure, along with the associated mechanisms. Our findings revealed that steady high pCO2 aggravated Cd multigenerational toxicity, and it was more under fluctuating acidification. Notably, by the F4 generation, copepods potentially adapted to the combined stressors. Through transcriptomic and DNA methylation analyses of copepods from the F1 and F4 generations, we found that under combined exposure, F1 copepods likely reallocated more energy to counteract Cd toxicity; however, DNA hypermethylation inhibited Cd exclusion and detoxification/stress response pathways, ultimately compromising development and reproduction. In contrast, in the F4 generation, DNA hypomethylation enhanced processes such as cuticle repair program, compensatory mechanism (e.g., detoxification and immune response), and reproduction, consequently increasing the copepod’s fitness. These findings reveal an epigenetic basis for phenotypic acclimatization, offering marine copepods a supplementary mechanism to cope with combined stressors.
Continue reading ‘DNA methylation plasticity drives copepod resilience to coastal high pCO2 and cadmium pollution under multigenerational exposure’Significant effects of temperature and pH on zooplankton dynamics: implications for ocean warming and acidification
Published 20 October 2025 Science ClosedTags: abundance, biological response, community composition, field, multiple factors, North Pacific, otherprocess, temperature, zooplankton
Highlights
- The Yellow Sea coast showed a trend of warming and acidification of the sea water.
- Zooplankton along the Yellow Sea coast were affected by temperature and pH.
- Zooplankton showed significant spatial and temporal dynamics.
Abstract
Coastal ecosystems are increasingly affected by ocean warming and acidification, yet their combined impacts on zooplankton communities remain inadequately studied. Based on 11 ecological surveys conducted along the Yellow Sea coast between 2021 and 2023, we analyzed the responses of zooplankton communities to changes in seawater temperature and pH, which were accompanied by pronounced seasonal and spatial variation in community structure. Results revealed continuous warming and acidification trends. Copepods were the dominant group, followed by planktonic larvae, while Noctiluca scintillans and Centropages abdominalis exhibited clear seasonal outbreaks. Temperature showed a significantly negatively correlated with zooplankton abundance and biomass but positively with diversity and evenness, conversely, pH demonstrated the reverse pattern. Model analyses further indicated that the synergistic effects of warming and acidification were a major driver of dynamic and nonlinear fluctuations in zooplankton communities, pointing to the ecological instability of this coastal ecosystem. These findings provide observational evidence of climate-driven ecological change and highlight the importance of integrating zooplankton indicators into coastal monitoring and management strategies.
Continue reading ‘Significant effects of temperature and pH on zooplankton dynamics: implications for ocean warming and acidification’Coupled acidification-nitrification dynamics in eutrophic estuarine waters
Published 20 October 2025 Science ClosedTags: biogeochemistry, biological response, chemistry, community composition, field, molecular biology, North Pacific, otherprocess, prokaryotes
Highlights
- Mid-estuary emerges as a hotspot for coupled acidification-nitrification, intensified by hydrology.
- Nitrifier community structure adapts to acidification stress, while responds differently.
- AOB is more sensitive to acidification in estuarine water compared to AOA.
- Future climate change scenarios project intensified acidification and nitrification coupling in mid-estuary.
Abstract
The interplay between acidification and nitrification in estuarine systems could have profound effects on coastal biogeochemistry and ecosystem health. However, the lack of integrated field research risks oversimplifying their relationships in complex ecosystem dynamics. This study investigates the spatiotemporal covariations of acidification sensitivity and nitrification rates derived from observed inorganic carbon and nutrients data along a land-sea continuum. In the middle estuary, estuarine pH exhibited the highest sensitivity to ammonium concentration, coinciding with maximum nitrification rates. The coupling effect intensified by 40% during the transition from dry to wet hydrological conditions. Despite that microbial network complexity generally decreased with increased acidification sensitivity, ammonia-oxidizing bacterial communities are more sensitive to acidification in estuarine water compared to ammonia-oxidizing archaea. Conversely, in the lower estuary, acidification was associated with a decline in nitrification activities. Machine learning-based models suggest that climate change scenarios could exacerbate acidification and nitrification in the Pearl River Estuary, potentially amplifying their coupling effect in the middle estuary. This holistic approach not only advances our fundamental understanding of estuarine processes, also provides critical insights for policymakers and coastal managers striving to maintain the ecological integrity of these vital ecosystems in an era of rapid global change.
Continue reading ‘Coupled acidification-nitrification dynamics in eutrophic estuarine waters’Physiological and metabolic plasticity in Patella caerulea enables survival in the CO2 vent systems of the Castello Aragonese (Ischia Island)
Published 20 October 2025 Science ClosedTags: adaptation, biological response, field, Mediterranean, mollusks, otherprocess, physiology, respiration, vents
Highlights:
- OA induced physiological and metabolic adjustment in P. caerulea to allow survival
- Increased RR at low pH only during summer to potentially boost energy production
- Reduced ER at low pH during summer and transplant to preserve more energy resources
- Induction of carnitine metabolism to produce more energy in low pH
- Increase of osmoregulation, oxidative stress, and nucleic acid metabolites at low pH
Abstract
Ocean acidification (OA) represents a major threat to marine ecosystems, causing detrimental effects mainly on calcifying organisms. However, the limpet Patella caerulea is one of the few calcifiers that can inhabit the naturally acidified areas of the Castello Aragonese vent systems (Ischia Island, Italy). Its presence suggests that this species may have developed tolerance or adaptive strategies to cope with OA.
Nevertheless, the specific biological mechanisms remain largely unknown. To address this gap of knowledge, in our study we conducted physiological and metabolomics analyses on resident limpet populations collected along the acidification gradient of the Castello vent systems. Additionally, we investigated the same mechanisms in specimens transplanted for 30 days from ambient pH conditions to the different pH sites of the vent.
Only during summer, OA increased respiration rates in limpets from the most acidified site and, simultaneously, reduced excretion rates and likely protein catabolism, probably to preserve more energy resources while coping with this environmental stress. Furthermore, the individuals up-regulated carnitine metabolism, potentially enhancing energy production through β-oxidation, and several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms. Similar results were obtained also in limpets transplanted to low pH sites.
Overall, our results suggest that limpets exposed to acidified conditions may have developed tolerance strategies to maintain energetic reserves and allocate them among metabolic processes, which are fundamental in maintaining biological and ecological traits and distribution when facing environmental disturbance such as OA.
Continue reading ‘Physiological and metabolic plasticity in Patella caerulea enables survival in the CO2 vent systems of the Castello Aragonese (Ischia Island)’The bacterial community composition of American lobster (Homarus americanus) embryos and recently hatched larvae held under different temperature and acidification conditions
Published 16 October 2025 Science ClosedTags: biological response, BRcommunity, community composition, crustaceans, laboratory, molecular biology, multiple factors, North Atlantic, otherprocess, prokaryotes, reproduction, temperature
Previous research investigating the microbial community of American lobster embryos has long led researchers to believe this habitat comprised only a select few bacterial taxa. However, using 16S rRNA gene sequencing, we show this community to be more diverse than previously thought. We investigated how the bacterial communities of American lobster embryos and larvae change over embryogenesis and hatching in response to two environmental variables. Ovigerous female lobsters caught from Maine and Massachusetts were held under varying temperature and pH regimes that approximated observed and predicted warming and ocean acidification conditions in the Gulf of Maine (GoM) and Southern New England (SNE). The bacterial microbiome associated with the lobster embryos was quantified from two-time points during the experiment, and larvae were collected within 12 hours of hatching. Alpha diversity increased with each life history stage, and embryo and larvae microbiomes shared little community overlap with that in the surrounding tank water. Neither environmental conditions nor lobster origin significantly altered bacterial communities, with life history stage driving alpha and beta diversity. Embryos and larvae shared three core bacterial members identified as members of the genera Rubritalea, Delftia, and Stenotrophomonas. American lobster embryos and larvae appear to have a highly selective microhabitat for bacteria that is not altered by environmental conditions. This leads us to wonder what role the microbiome may have on a developing lobster, and where the microbiome is originating if not from the surrounding seawater.
Continue reading ‘The bacterial community composition of American lobster (Homarus americanus) embryos and recently hatched larvae held under different temperature and acidification conditions’Effects of multiple stressors on embryos and emerging larvae of the American lobster
Published 14 October 2025 Science ClosedTags: adaptation, biological response, crustaceans, laboratory, morphology, multiple factors, North Atlantic, otherprocess, physiology, reproduction, temperature
Environmental changes in the ocean can impose significant physiological costs and morphological changes to many marine organisms, and early life stages such as eggs and larvae are predicted to be particularly vulnerable to climate change drivers including warming and acidification. Although sensitivity to ocean change stressors during development has the potential to influence the performance, and ultimately the recruitment, of postlarvae and juveniles, the nature and strength of physiological modifications during embryo development is understudied in the ecologically and economically important American lobster Homarus americanus. We investigated the long-term, interactive impacts of ocean acidification and ocean warming on the development and physiology of brooded lobster embryos. We exposed ovigerous females to a combination of 2 temperatures and 2 pH levels for 5 mo, throughout which we measured development, metabolic rate, biochemical composition, and enzyme activity in their brooded embryos. The physiology of American lobster embryos appears to be robust to ocean acidification conditions but sensitive to warming, particularly for metabolic traits. We also found that warming induced a reduction in the size of freshly hatched larvae. Understanding how environmental change influences these early life stages of lobsters can improve predictions for how this species will fare in a changing ocean environment.
Continue reading ‘Effects of multiple stressors on embryos and emerging larvae of the American lobster’Research progress on responses of upper-ocean nitrogen uptake and nitrification to ocean acidification and warming (in Chinese)
Published 10 October 2025 Science ClosedTags: biogeochemistry, biological response, multiple factors, otherprocess, phytoplankton, prokaryotes, review, temperature
Nitrogen uptake by phytoplankton and nitrification mediated by nitrifying microorganisms in the upper ocean are key processes affecting marine productivity and carbon sequestration. How these two critical nitrogen cycle processes respond to the dual stressors of ocean acidification and warming represents a pressing research frontier in marine biogeochemical cycles and global change. Elucidating this issue will provide a theoretical foundation for accurately assessing future changes in ocean productivity and the efficiency of the biological pump. However, most existing studies rely on laboratory pure culture experiments, which may fail to adequately reflect the complex interactions between phytoplankton and nitrifying microorganisms in natural marine ecosystems and their responses to changes in environmental factors. The impacts and mechanisms of ocean acidification and warming on nitrogen uptake and nitrification are systematically summarized. In addition, more attention needs to be paid to other factors, such as strengthened ocean stratification and decreased dissolved oxygen contents, induced by ocean acidification and warming, which could indirectly affect nitrogen uptake and nitrification. Existing problems, such as insufficient in-situ monitoring of ecosystems, limited synergistic studies on multiple processes and stresses, and inadequate understanding of long-term adaptation processes, are highlighted. Finally, three key areas of research that need to be focused on in the future were prospected: ① to conduct the synchronous coupling analysis of nitrogen uptake and nitrification processes and clarify the interactive effects of acidification and warming, ② to explore the vertical differentiation response mechanisms of the above processes in the upper ocean, particularly in oligotrophic oceans, where critical knowledge gaps exist, and ③ to elucidate the long-term adaptation processes and nonlinear response laws of phytoplankton and nitrifying microorganisms. A three-in-one research framework is constructed in the spatial dimension, temporal scale and the experimental system to provide a scientific basis for evaluating the evolution of key nitrogen processes and marine productivity under global change.
Continue reading ‘Research progress on responses of upper-ocean nitrogen uptake and nitrification to ocean acidification and warming (in Chinese)’
