The carbonate system and nutrient dynamics play a crucial role in regulating phytoplankton productivity and carbon cycling in tropical coastal ecosystems, which are highly sensitive to climate change and anthropogenic activities. The present study investigates the spatio-temporal variability of physico-chemical parameters, nutrient dynamics and their influence on phytoplankton community structure along the southwest coast of Bay of Bengal (SWBoB), with particular focus on their relationship with partial pressure of carbon di-oxide (pCO₂). Seasonal sampling was carried out entirely with onboard cruise programs, with each cruise representing different season such as pre-monsoon, monsoon, post-monsoon and summer. The study covered SWBoB among six stations namely Tuticorin, Nagapattinam, Poombuhar, Pondicherry, Mahabalipuram and Chennai during 2022–2023. A total of 77 phytoplankton species representing five taxonomic classes were identified and quantified, where minimum and maximum phytoplankton density were observed during summer (7.498 × 103 cells. L-1) and pre-monsoon (7.0014 × 104 cells. L-1) respectively. A pronounced spatio-temporal variations were observed in physico-chemical parameters and nutrients with peak phytoplankton density and pCO₂ value (487.47 µatm) during pre-monsoon period were attributed to enhanced microbial respiration, riverine input and upwelling of CO₂-rich subsurface waters. In contrast, reduced pCO₂ level (274.27 µatm) observed during summer coincided with water column stratification, nutrient limitation and elevated photosynthetic uptake by phytoplankton. Canonical Correspondence Analysis (CCA) indicated a strong association were attributed nutrient availability and phytoplankton assemblages, with diatoms prevailing under nutrient-rich and moderate pCO₂ conditions, simultaneously dinoflagellate dominated at high pCO₂ conditions. A significant positive relationship between pCO₂ and phytoplankton species with canonical score (0.91) of Noctiluca scintillans highlights the sensitivity of SwBoB productivity to carbon system variability. During pre-monsoon, high pCO₂ (487.47 µatm), chlorophyll-a (3.10 µg L-1) and phytoplankton density (7.0014 × 104 cells. L-1) at station T2, co-dominated by both diatom (46 %) and dinoflagellates (40 %), specifically Noctiluca scintillans (6.32 %). This indicated that nutrient enrichment and CO₂-rich upwelling enhanced phytoplankton productivity and carbon dynamics. These findings imply that pCO₂ variations, determined by temperature, salinity and nutrient inputs which influence the phytoplankton structure and productivity, impacts carbon cycling and ecosystem dynamics in the SWBoB region. This study provides valuable insights into carbon cycling and ecosystem functioning, crucial for sustaining regional fisheries and anticipating monsoon-driven changes in coastal productivity.
Continue reading ‘Seasonal variations of physico-chemical variables interaction and their influence on phytoplankton and pCO2 dynamics in the Southwest Bay of Bengal’Posts Tagged 'abundance'
Seasonal variations of physico-chemical variables interaction and their influence on phytoplankton and pCO2 dynamics in the Southwest Bay of Bengal
Published 12 December 2025 Science Leave a CommentTags: abundance, biogeochemistry, biological response, chemistry, community composition, field, Indian, otherprocess, phytoplankton
Newly discovered CO2 (carbon dioxide) vent cave drives r-strategy shift in a Mediterranean aphotoendosymbiotic coral
Published 14 November 2025 Science ClosedTags: abundance, biological response, chemistry, corals, field, growth, Mediterranean, morphology, reproduction, vents
Highlights
- Characterization of an unexplored CO2 vent cave
- CO2 vents chemical-physical parameters affect ecological traits of calcifiers
- Aphotoendosymbiotic solitary coral naturally inhabiting a CO2-rich gas environment.
- Prolonged acidified conditions did not affect C. inornata growth rate
- Shift towards an r-demographic strategy in response to acidified conditions
Abstract
Submarine CO2 volcanic vents represent peculiar environments with varying seawater chemical-physical parameters that may affect the ecological traits of calcifying organisms, such as growth and demographic characteristics. The present study focused on exploring the growth and population dynamics of a temperate, solitary and aphotoendosymbiotic coral Caryophyllia inornata (Duncan, 1878) living in a CO2 vent cave at 14 m depth. The volcanic emissions in and around the cave led high levels of pCO2, resulting in lower calcium carbonate saturation state (Ωa: 2.1–2.2) values compared to those observed in the ambient seawater of the Mediterranean Sea, not affected by venting activity. Prolonged acidified conditions (pHT: 7.5) did not affect C. inornata growth rate but resulted in a population with higher percentage of juvenile individuals, lower average ages and a lower age at maximum biomass percentage, thus suggesting a transition in its population dynamics towards an r-demographic strategy. This study provides a detailed characterization of a previously unexplored CO2 vent cave, highlighting the importance of these sites as natural laboratories to offer valuable insights into understanding the full ecological impact of aphotoendosymbiotic corals under ocean acidification.
Continue reading ‘Newly discovered CO2 (carbon dioxide) vent cave drives r-strategy shift in a Mediterranean aphotoendosymbiotic coral’Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification
Published 27 October 2025 Science ClosedTags: abundance, biological response, BRcommunity, field, mollusks, North Pacific, otherprocess, performance, review, zooplankton
The pteropod Limacina helicina has become an important bioindicator for the impacts of ocean acidification on marine ecosystems, yet its vertical distribution and diel vertical migration (DVM) patterns remain poorly understood. Understanding these behaviours is critical to accurately predict the risks of ocean acidification to pteropods since the depth ranges they inhabit strongly influence their exposure to water corrosive to aragonite shells (i.e. ΩAr <1), given the natural vertical gradients in pH and ΩAr. To resolve the vertical distribution of L. helicina, we utilized an existing dataset consisting of 179 vertically stratified zooplankton net tows from the Northeast Pacific spanning 1983–2019. Using conventional observational analyses and Bayesian statistical models, we determine and compare the average day and night vertical distributions of two size ranges of L. helicina, plus those of the strong vertical migrator euphausiid Euphausia pacifica and a non-migratory control group of mollusc larvae. We show that the average day and night vertical distributions and mean depths of L. helicina do not differ and closely match those of the non-migratory control, indicating that L. helicina does not perform DVM in this region. Typical mean depths of L. helicina are ∼50–70 m, with ≥ 75% of the population occupying the upper ∼100 m, and ≥ 50% being found in the upper ∼50 m, regardless of body size and time of day. Given the typical shape of ΩAr profiles in the ocean, we estimate that pteropod exposure to low ΩAr may be overestimated if calculated using the standard vertically integrated approach (i.e. a homogeneous depth distribution) as opposed to our depth-resolved vertical distribution.
Continue reading ‘Depth-resolved vertical distribution of the pteropod Limacina helicina in the Northeast Pacific and its implications for exposure to ocean acidification’Significant effects of temperature and pH on zooplankton dynamics: implications for ocean warming and acidification
Published 20 October 2025 Science ClosedTags: abundance, biological response, community composition, field, multiple factors, North Pacific, otherprocess, temperature, zooplankton
Highlights
- The Yellow Sea coast showed a trend of warming and acidification of the sea water.
- Zooplankton along the Yellow Sea coast were affected by temperature and pH.
- Zooplankton showed significant spatial and temporal dynamics.
Abstract
Coastal ecosystems are increasingly affected by ocean warming and acidification, yet their combined impacts on zooplankton communities remain inadequately studied. Based on 11 ecological surveys conducted along the Yellow Sea coast between 2021 and 2023, we analyzed the responses of zooplankton communities to changes in seawater temperature and pH, which were accompanied by pronounced seasonal and spatial variation in community structure. Results revealed continuous warming and acidification trends. Copepods were the dominant group, followed by planktonic larvae, while Noctiluca scintillans and Centropages abdominalis exhibited clear seasonal outbreaks. Temperature showed a significantly negatively correlated with zooplankton abundance and biomass but positively with diversity and evenness, conversely, pH demonstrated the reverse pattern. Model analyses further indicated that the synergistic effects of warming and acidification were a major driver of dynamic and nonlinear fluctuations in zooplankton communities, pointing to the ecological instability of this coastal ecosystem. These findings provide observational evidence of climate-driven ecological change and highlight the importance of integrating zooplankton indicators into coastal monitoring and management strategies.
Continue reading ‘Significant effects of temperature and pH on zooplankton dynamics: implications for ocean warming and acidification’The effects of ocean acidification on the epiphytic bacterial community of Sargassum thunbergii via high-throughput sequencing
Published 11 September 2025 Science ClosedTags: abundance, adaptation, algae, biological response, BRcommunity, community composition, laboratory, molecular biology, nitrogen fixation, North Pacific, otherprocess, physiology, prokaryotes
Marine macroalgae and their epiphytic bacteria have established a symbiotic relationship. Although the effects of ocean acidification (OA) on macroalgae have been extensively studied, its impact on these epiphytic bacteria remains unclear. This study investigated the OA-induced shifts in the epiphytic bacterial community of Sargassum thunbergii from Qingdao’s intertidal zone using 16S rDNA sequencing. The results indicated that elevated CO2 altered bacterial community structure and function, reducing diversity while maintaining dominant taxa but significantly changing their relative abundances. The abundances of Proteobacteria, Firmicutes, and Verrucomicrobiota declined, whereas Campylobacterota, Desulfobacterota, and Spirochaetota increased. The specific phyla like Cloacimonadota, Calditrichota and Entotheonellaeota also emerged. These shifts were linked to the environmental adaptability and stress resistance of epiphytic bacteria as well as the metabolic activities of the host algae, particularly in protein and fatty acid degradation.
Functional predictions revealed that OA primarily affected nitrogen and sulfur metabolism in the epiphytic bacterial community, with effects intensifying over time. Specifically, nitrogen fixation increased, while dark oxidation of sulfur compounds, dark sulfite oxidation, and dark sulfur oxidation decreased. In conclusion, ocean acidification directly induced changes in the abundance of epiphytic bacterial taxa with varying stress resistance and adaptability. Simultaneously, it promoted shifts in bacterial taxa closely associated with the host algal metabolic activities, ultimately reshaping the epiphytic bacterial community on S. thunbergii. These findings provided new insights into the macroalgae-epiphytic bacteria interactions under ocean acidification and provided important guidance for macroalgal cultivation.
Continue reading ‘The effects of ocean acidification on the epiphytic bacterial community of Sargassum thunbergii via high-throughput sequencing’Decreasing foraminiferal flux in response to ongoing climate change in the Santa Barbara Basin, California
Published 2 September 2025 Science ClosedTags: abundance, biological response, community composition, field, North Pacific, otherprocess, protists, review
The rapid response of foraminiferal assemblages to changing climate makes their shells an invaluable geological record of the past. However, the time frame over which foraminifera respond to climatic signals and the specific drivers influencing assemblage composition and abundance remain obscure. We focus on the impact of ongoing, anthropogenic climate change on planktic foraminifera in the California Current ecosystem, which would appear as a nearly instantaneous event in the sediment record. The Santa Barbara Basin sediment trap, located off the coast of California, USA since 1993, provides a record of more than 30 years of particulate and foraminiferal flux in the basin. The sediment trap captures the superposition of the annual cycle of seasonal upwelling, Pacific multiannual El Niño–Southern Oscillation-driven temperature changes, and anthropogenically forced climate change. We present data on planktic foraminiferal flux collected between 2014–2021, at two-week intervals (164 samples, 60 006 individuals) and compare results to previously published data from 1993–1998. Consistent with previous studies, the most abundant species from 2014–2021 were Globigerina bulloides, Neogloboquadrina incompta, and Turborotalita quinqueloba, with peak fluxes occurring in the spring and summer. Lower fluxes and an increase in the abundance of N. incompta and subtropical species characterize the winter season. We find a 37.9 % decrease in total foraminiferal flux relative to the 1990s, primarily driven by a decrease in G. bulloides abundance. This decrease is accompanied by a 21.0 % overall reduction in calcium carbonate flux. We also find a decrease in the relative abundance of subtropical species (Globigerinoides ruber, Orbulina universa, and Neogloboquadrina dutertrei) and their fluxes compared to the 1990s, opposite expectations if assemblages and fluxes were to follow anthropogenic warming signals. We hypothesize that the observed decrease in subtropical species abundance and flux is likely related to an increase in acidification and in the timing and magnitude of upwelling along the California coast. The extremely rapid responses of foraminifera to ongoing changes in carbonate chemistry and temperature suggest that climate change is already having a meaningful impact on coastal carbon cycling. The observed decrease in particulate inorganic carbon (PIC) flux relative to particulate organic carbon (POC) flux may facilitate increased oceanic uptake of atmospheric CO2.
Continue reading ‘Decreasing foraminiferal flux in response to ongoing climate change in the Santa Barbara Basin, California’Pteropods reliably record the aragonite compensation depth in the western Bay of Bengal
Published 21 August 2025 Science ClosedTags: abundance, biological response, community composition, field, Indian, mollusks, otherprocess, protists, zooplankton
Anthropogenic greenhouse gas emissions have a detrimental impact on the carbon sequestration by the oceans. Pteropods, a crucial component of the ocean’s planktic community, secrete aragonite shells that are sensitive to increasing atmospheric carbon dioxide levels, making them the first indicators of ocean acidification. Therefore, pteropods are often used to observe the changes in aragonite compensation depth (ACD). Intriguingly, in the major parts of the northern Indian Ocean, the chemically defined ACD is < 800 m, but pteropods have been reported in surface sediments collected from much deeper depths in the same region, which raises questions about the use of pteropods to trace ACD in this area. To address this ambiguity, we conducted a systematic and detailed evaluation of pteropods to trace the changes in ACD in the western Bay of Bengal, which is the first-ever such study. The pteropods population dominated by Heliconoides inflatus was low on the inner shelf, and isolated pockets of high pteropod abundance were restricted to the upper slope. Based on the pteropod abundance in the surface sediments and the ratio of pteropods to planktic foraminifera, we report the baseline ACD in the western Bay of Bengal at ~ 500 m. The aragonite compensation depth based on the pteropod abundance in the surface sediments correlates well with the chemically defined ACD in this region. These findings will help to assess the impact of ocean acidification on aragonite compensation depth in the western Bay of Bengal.
Continue reading ‘Pteropods reliably record the aragonite compensation depth in the western Bay of Bengal’Interactive effects of ocean acidification and warming disrupt calcification and microbiome composition in bryozoans
Published 12 August 2025 Science ClosedTags: abundance, adaptation, biological response, BRcommunity, bryozoa, community composition, communitymodeling, field, Mediterranean, modeling, molecular biology, morphology, mortality, otherprocess, prokaryotes, vents
Marine habitat-forming species provide crucial ecosystem functions and services worldwide. Still, the individual and combined long-term effects of ocean acidification and warming on bryozoan populations, structures, and microbiomes remain unexplored. Here, we investigate the skeletal properties, microbiome shifts, and population trends of two bryozoan species living inside and outside a volcanic CO2 vent, a natural analog to future ocean acidification conditions. We show that bryozoans can acclimatize to acidification by adjusting skeletal properties and maintaining stable microbiomes. However, we document a decrease in microbial genera playing essential functions under acidified conditions. Moreover, we show that ocean acidification exacerbates bryozoan cover loss and mortality caused by ocean warming. The observed shifts in the microbiome and cover suggest that, despite their morphological plasticity, bryozoan species will be heavily impacted by future ocean conditions, posing a threat to many benthic ecosystems in which they play a pivotal role.
Continue reading ‘Interactive effects of ocean acidification and warming disrupt calcification and microbiome composition in bryozoans’Mollusc epifaunal assemblages are simplified due to habitat shifts under ocean acidification
Published 14 July 2025 Science ClosedTags: abundance, biological response, BRcommunity, community composition, field, mollusks, North Atlantic, otherprocess, vents
Highlights
- Ocean acidification can modify the structure of marine communities.
- The macroalga Halopteris sp. supports a rich community of associated molluscs.
- Halopteris sp. from an acidified site support fewer and less diverse assemblages.
- Most abundant species were present both at the acidified and reference sites.
- Biodiversity of molluscs will be simplified under acidified conditions.
Abstract
Ocean acidification can have profound effects on marine organisms, particularly those that rely on calcium carbonate for shell and skeleton formation, resulting in structural changes to marine ecosystems. Here, we contrast the structure of marine mollusc communities (epifauna) associated with an abundant shallow-water macroalga, Halopteris scoparia, in an area with seawater carbonated by natural CO2 seeps and three reference sites, off the Azores archipelago. Epifaunal mollusc abundance and diversity were significantly lower at the CO2 seep compared to reference sites whilst species accumulation curves and Jaccard multivariate analyses showed that the mollusc assemblage was consistently less diverse at the CO2 seep. Most of the abundant epifaunal species that were present at the CO2 seep were also found at reference sites, but less common or rare species were generally absent from the former. We conclude that while some molluscs are likely to cope with ocean acidification, the overall biodiversity of epifaunal molluscs will be simplified under these conditions in a future ocean.
Continue reading ‘Mollusc epifaunal assemblages are simplified due to habitat shifts under ocean acidification’CO2 enrichment enhances biomass density and C:N:P ratios in phytoplankton assemblage in the coastal water of the Taiwan Strait
Published 3 July 2025 Science ClosedTags: abundance, biogeochemistry, biological response, community composition, laboratory, North Pacific, otherprocess, phytoplankton
Seawater CO2 concentrations are steadily increasing in the Taiwan Strait of the Southeast China, while the effects of rising CO2 on carbon fixation and elemental composition of phytoplankton assemblages in this area are still poorly understood. Here, we enriched the seawater CO2 concentrations to 808 μatm and above to simulate the CO2–induced ocean acidification, and investigated the effects of CO2 enrichment on concentrations of chlorophyll (Chl) a, particulate organic carbon (POC), nitrogen (PON) and phosphorus (POP), the C:N:P ratio, and phytoplankton community composition in the coastal surface seawaters of the northwest Taiwan Strait in autumn 2023 and spring 2024 through an outdoor incubation experiment. After three days of incubation, CO2 enrichment increased the concentrations of Chl a by 1–14%, POC by 21–32% and PON by 21–56%, whereas reduced the POP concentrations by 1–37%, leading to elevated ratios of POC:POP and PON:POP. Furthermore, elevated CO2 level enhanced cell abundances of the dominant diatom genera at three stations. These results suggest that phytoplankton has the potential to buffer against rising atmospheric CO2 level and can help us to understand the elemental biogeochemistry in the Taiwan Strait under future ocean acidification scenarios.
Continue reading ‘CO2 enrichment enhances biomass density and C:N:P ratios in phytoplankton assemblage in the coastal water of the Taiwan Strait’Effects of different environmental stressors on marine biogenic sulfur compounds in the Northwest Pacific and Eastern Indian Oceans
Published 2 July 2025 Science ClosedTags: abundance, biogeochemistry, biological response, community composition, growth, Indian, laboratory, multiple factors, North Pacific, otherprocess, physiology, phytoplankton
Abstract
Key roles of marine dimethyl sulfoniopropionate (DMSP), dimethyl sulfide (DMS), methyl mercaptan (MeSH), and carbon disulfide (CS2) in the sulfur cycle and/or atmospheric chemistry, alongside the rapid environmental changes in marine ecosystems, underscore the need to understand their responses to dynamic ecosystem shifts. We conducted two ship-based incubation experiments in the Northwest Pacific and Eastern Indian Oceans to explore how dust deposition, ocean acidification, and microplastic exposure impact these compounds. Our results demonstrate that these stressors not only alter phytoplankton community but also modify per-cell DMSP production capacity and DMSP degradation pathways, subsequently influencing DMSP, DMS, and MeSH concentrations. CS2‘s response closely mirrors phytoplankton abundance and species. Initial physical-chemical conditions, such as carbonate system and nutrient availability, may mediate the sensitivity of phytoplankton and sulfur compounds to environmental shifts. This study enhances our understanding of biogenic sulfur responses in dynamic marine ecosystems and provides essential basis for future climate modeling.
Key Points
- External stressors alter algal communities and production and degradation of dimethyl sulfoniopropionate, thus affecting biogenic sulfides
- Response of carbon disulfide to different environmental stressors is closely linked to algal abundance
- Initial physical-chemical conditions of seawater mediate algae and biogenic sulfides’ sensitivity to environmental stressors
Plain Language Summary
Biogenic sulfur-containing compounds in the ocean, such as dimethyl sulfoniopropionate (DMSP), dimethyl sulfide (DMS), methyl mercaptan (MeSH), and carbon disulfide (CS2), play critical roles in the global sulfur cycle and have the potential to influence the Earth’s climate. For instance, DMS released from the ocean into the atmosphere contributes to cloud formation, which in turn affects weather patterns. Over recent decades, rapid environmental changes in marine ecosystems may have significantly impacted marine biogeochemical processes. To investigate how these compounds respond to such changes, we conducted two ship-based incubation experiments in the Northwest Pacific and Eastern Indian Oceans. We assessed the effects of dust deposition, ocean acidification (due to increased carbon dioxide), and microplastic pollution on the production of DMSP, DMS, MeSH, and CS2 by marine organisms. Our results demonstrate that these stressors alter phytoplankton growth and community composition and impact the pathways through which DMSP is degraded. Consequently, the concentrations of sulfur compounds in seawater are affected. Notably, changes in CS2 levels were more closely related to shifts in phytoplankton abundance. These findings enhance our understanding of how marine sulfur compounds may respond to future oceanic changes and offer valuable data for improving climate models.
Continue reading ‘Effects of different environmental stressors on marine biogenic sulfur compounds in the Northwest Pacific and Eastern Indian Oceans’Antarctic macroalgal-associated amphipod assemblages exhibit long-term resistance to ocean acidification
Published 19 June 2025 Science ClosedTags: abundance, algae, Antarctic, biological response, BRcommunity, community composition, crustaceans, laboratory, mortality, otherprocess
The pH of the world’s oceans has decreased since the Industrial Revolution due to the oceanic uptake of increased atmospheric CO2 in a process called ocean acidification. Low pH has been linked to negative impacts on the calcification, growth, and survival of calcifying invertebrates. Along the Western Antarctic Peninsula, dominant brown macroalgae often shelter large numbers of diverse invertebrate mesograzers, many of which are calcified. Mesograzer assemblages in this region are often composed of large numbers of amphipods which have key roles in Antarctic macroalgal communities. Understanding the impacts of acidification on amphipods is vital for understanding how these communities will be impacted by climate change. To assess how long-term acidification may influence the survival of different members in these assemblages, mesograzers, particularly amphipods, associated with the brown alga Desmarestia menziesii were collected from the immediate vicinity of Palmer Station, Antarctica (S64°46′, W64°03′) in January 2020 and maintained under three different pH treatments simulating ambient conditions (approximately pH 8.1), near-future conditions for 2100 (pH 7.7), and distant future conditions (pH 7.3) for 52 days then enumerated. Total assemblage number and the relative proportion of each species in the assemblage were found to be similar across the pH treatments. These results suggest that amphipod assemblages associated with D. menziesii may be resistant to long-term exposure to decreased pH.
Microzooplankton community dynamics under ocean acidification: key observations and insights
Published 30 April 2025 Science ClosedTags: abundance, biological response, BRcommunity, community composition, Indian, laboratory, otherprocess, phytoplankton, prokaryotes, zooplankton
Microzooplankton (MZP) community dynamics under ocean acidification were studied through pH manipulated microcosm experiments conducted in the coastal waters of the Bay of Bengal (off Vishakhapatnam) during the months of July and October 2022 (Experiment 1 and Experiment 2). The total abundance of phytoplankton and microzooplankton (MZP) communities was varied from 3.66 × 104 to 5.27 × 105 Cells. L−1 and 0.06 × 103 to 1.53 × 103 Cells. L−1, respectively, and a significant difference in phytoplankton and MZP abundance was found between the initial and final day of the entire experimental samples (control and acidified). The initial seawater samples were dominated with centric diatom species Dactyliosolen fragilissimus (Experiment 1 and Experiment 2: 72–82%) and shifted to pennate diatoms such as Pseudo-nitzschia sp. (Experiment 1: 60–68%) and Amphora sp. (Experiment 2: 80–94%) at the end of the experiments (all acidified and control samples). The initial MZP community composition consisted of four different groups LC: loricate ciliates, ALC: aloricate ciliates (heterotrophy and mixotrophy), HDS: heterotrophic dinoflagellates and copepod nauplii, and at the end of the experiments, it was shifted entirely to the dominance of aloricate ciliates (16–73%) and heterotrophic dinoflagellates (67–100%) in all the samples (control and acidified) in Experiments 1 and 2, respectively. Statistical analysis (Spearman’s rank correlation) results showed a relative and significant inverse relation of MZP with phytoplankton biomass and abundance and heterotrophic bacterial counts in all the samples (control and acidified). Besides, the LC showed a weak correlation with Chl-a, and the HDS showed a significant correlation with LC, phytoplankton biomass and abundance, and bacterial counts (picocyanobacteria and heterotrophic bacteria). These results indicate that the MZP may graze on both picocyanobacteria and heterotrophic bacteria, and also, HDS may graze on their relative community like LC. Canonical correlation analysis (CCA) revealed that prey abundance such as phytoplankton biomass (Chl-a), picocyanobacteria, and heterotrophic bacterial communities are most influencing variables on the MZP assemblages than other environmental variables such as pH, temperature, and salinity. Thus, these findings show that the MZP community dynamics under ocean acidification may vary with different species and groups due to their food availability (indirect effect) and individual competence (direct effect) to different environmental conditions, such as pH variations.
Continue reading ‘Microzooplankton community dynamics under ocean acidification: key observations and insights’Investigating the effects of environmental stress on coastal zooplankton populations: from mechanistic drivers to trophic impacts
Published 29 January 2025 Science ClosedTags: abundance, biological response, BRcommunity, crustaceans, field, laboratory, mortality, multiple factors, otherprocess, oxygen, performance, zooplankton
Environmental stressors, such as hypoxia and acidification, are increasing in intensity, duration, and extent in coastal waters and estuaries. Environmental stressors are known to affect a wide range of marine species, including zooplankton. Zooplankton are a critical link in marine food webs, connecting phytoplankton to higher trophic levels such as economically important fish, and are thought to be informative indicators of ecosystem change. For this reason, increased attention has been paid to understanding the mechanisms shaping zooplankton populations. Previous studies have shown that zooplankton exhibit both lethal and sublethal responses to changes in dissolved oxygen and pH. However, there is a range of species-specific responses to stressors. Different responses across species alter zooplankton community composition and spatial distributions, directly impacting predator-prey interactions and the trophic dynamics in coastal environments. This dissertation integrates laboratory experiments, in situ observations, and field work to understand how environmental stressors affect coastal zooplankton populations and nearshore food webs. In Chapter 1, I conducted laboratory experiments to investigate whether the copepod, Calanus pacificus, showed behavioral responses to stressors, and whether these responses lead to changes in vertical population distributions. Our laboratory experiments demonstrated significant effects of bottom water hypoxia and acidification on behavioral avoidance, swimming statistics, and apparent mortality rates in C. pacificus. In Chapter 2, I used a remote camera system to quantify in situ behavioral responses of zooplankton to stressors, using results from Chapter 1 to generate hypotheses about observations in the field. Our in situ videos revealed that copepods in stressful conditions exhibited significantly slower swimming speeds than copepods in non-stressful conditions, while amphipods showed significantly decreased abundances within stressful conditions. Finally, in Chapter 3, I collected zooplankton net tows in an intertidal estuary to investigate the transport of pelagic species into eelgrass beds and the role of eelgrass beds as potential sinks of pelagic zooplankton over the tidal cycle, potentially due to predation by juvenile fish. We found evidence of transport of pelagic species into intertidal habitats and measured large spatial and temporal variability, highlighting the need for sampling programs that can capture small-scale variability. This dissertation provides insight into the mechanisms that link the effects of environmental stressors across individual responses to population, community, and ecosystem level scales and suggests novel methodologies to help advance our understanding of changing zooplankton dynamics.
Continue reading ‘Investigating the effects of environmental stress on coastal zooplankton populations: from mechanistic drivers to trophic impacts’Migrating is not enough for modern planktonic foraminifera in a changing ocean
Published 20 November 2024 Science ClosedTags: abundance, globalmodeling, modeling, mortality, otherprocess, phytoplankton
Rising carbon dioxide emissions are provoking ocean warming and acidification1,2, altering plankton habitats and threatening calcifying organisms3, such as the planktonic foraminifera (PF). Whether the PF can cope with these unprecedented rates of environmental change, through lateral migrations and vertical displacements, is unresolved. Here we show, using data collected over the course of a century as FORCIS4 global census counts, that the PF are displaying evident poleward migratory behaviours, increasing their diversity at mid- to high latitudes and, for some species, descending in the water column. Overall foraminiferal abundances have decreased by 24.2 ± 0.1% over the past eight decades. Beyond lateral migrations5, our study has uncovered intricate vertical migration patterns among foraminiferal species, presenting a nuanced understanding of their adaptive strategies. In the temperature and calcite saturation states projected for 2050 and 2100, low-latitude foraminiferal species will face physicochemical environments that surpass their current ecological tolerances. These species may replace higher-latitude species through poleward shifts, which would reduce low-latitude foraminiferal diversity. Our insights into the adaptation of foraminifera during the Anthropocene suggest that migration will not be enough to ensure survival. This underscores the urgent need for us to understand how the interplay of climate change, ocean acidification and other stressors will impact the survivability of large parts of the marine realm.
Continue reading ‘Migrating is not enough for modern planktonic foraminifera in a changing ocean’Changes in gill neuroepithelial cells and morphology of threespine stickleback (Gasterosteus aculeatus) to hypoxia and simulated ocean acidification
Published 7 August 2024 Science ClosedTags: abundance, biological response, chemistry, fish, laboratory, morphology, North Pacific, otherprocess, physiology, respiration
Coastal marine environments are characterized by daily, seasonal and long-term changes in both O2 and CO2, driven by local biotic and abiotic factors. The neuroepithelial cells (NECs) of fish are thought to be the putative chemoreceptors for sensing oxygen and CO2, and, thus, NECs play a key role in detecting these environmental changes. However, the role of NECs as chemosensors in marine fish remains largely understudied. In this study, the NECs of marine threespine sticklebacks (Gasterosteus aculeatus) were characterized using immunohistochemistry. We then determined if there were changes in NEC size and density, and in gill morphology in response to either mild (10 kPa) or moderate (6.8 kPa) hypoxia and two levels of elevated CO2 (1,500 and 3,000 µatm). We found that the NECs of stickleback contained synaptic vesicles and were innervated, and were 50–300% larger and 2 to 4 times more abundant than in other similar sized freshwater fishes. NEC size and density were largely unaffected by exposure to hypoxia, but there was a 50% decrease in interlamellar cell mass (ILCM) in response to mild and moderate hypoxia. NECs increased in size, but not abundance in response to elevated CO2. Moreover, fish exposed to moderate or elevated CO2 had 53–78% larger ILCMs compared to control fish. Our results demonstrated that adult marine sticklebacks have NECs that can respond to environmentally relevant pCO2 and likely hypoxia, which highlights the importance of NECs in marine fishes under the heterogeneity of environmental conditions in coastal areas.
Continue reading ‘Changes in gill neuroepithelial cells and morphology of threespine stickleback (Gasterosteus aculeatus) to hypoxia and simulated ocean acidification’Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding
Published 2 August 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, North Atlantic, otherprocess, physiology, prokaryotes
Ocean acidification and warming threaten marine life, yet the impact of these processes on microbes remains unclear. Here, we performed basin-scale DNA metabarcoding of prokaryotes (16S V4–V5) and protists (18S V9) in the Gulf of Mexico and applied generalized linear models to reveal group-specific environmental correlates of functionally diverse microbes. Models supported prior physiological trends for some groups, like positive temperature effects on SAR11 and SAR86, and a positive effect of pH on Prochlorococcus that implied a negative response to decreasing pH. New insights were revealed for protists, like Syndiniales and Sagenista (e.g., positive pH effects), which offset positive relationships with temperature and reinforced the importance of considering multiple stressors simultaneously. Indicator analysis revealed phytoplankton, like Ostreococcus sp. and Emiliania huxleyi, that were associated with more acidic waters and may reflect candidate indicators of ocean change. Our findings highlight the need for sustained microbial sampling in marine systems, with implications for carbon export, nutrient cycling, and ecosystem health.
Continue reading ‘Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding’From nutrients to fish: impacts of mesoscale processes in a global CESM-FEISTY eddying ocean model framework
Published 26 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, fish, globalmodeling, modeling, otherprocess, phytoplankton, review, zooplankton
The ocean sustains ecosystems that are essential for human livelihood and habitability of the planet. The ocean holds an enormous amount of carbon, and serves as a critical source of nutrition for human societies worldwide. Climate variability and change impacts marine biogeochemistry and ecosystems. Thus, having state-of-the-art simulations of the ocean, which include marine biogeochemistry and ecosystems, is critical for understanding the role of climate variability and change on the ocean biosphere. Here we present a novel global eddy-resolving (0.1° horizontal resolution) simulation of the ocean and sea ice, including ocean biogeochemistry, performed with the Community Earth System Model (CESM). The simulation is forced by the atmospheric dataset based on the Japanese Reanalysis (JRA-55) product over the 1958 – 2021 period. We present a novel configuration of the CESM marine ecosystem model in this simulation which includes two zooplankton classes: microzooplankton and mesozooplankton. This novel planktonic food web structure facilitates “offline” coupling with the Fisheries Size and Functional Type (FEISTY) model. FEISTY is a size- and trait-based model of fish functional types contributing to fisheries. We present an evaluation of the ocean biogeochemistry, marine ecosystem (including fish types), and sea ice in this high-resolution simulation compared to available observations and a corresponding low resolution (nominal 1°) simulation. Our analysis offers insights into environmental controls on trophodynamics within the ocean. We find that this high resolution simulation provides a realistic reconstruction of nutrients, oxygen, sea ice, plankton and fish distributions over the global ocean. On global and large regional scales the high-resolution simulation is comparable to the standard 1° simulation, but on smaller scales, explicitly resolving the mesoscale dynamics is shown to be important for accurately capturing trophodynamic structuring, especially in coastal ecosystems. We show that fine scale ocean features leave imprints on ocean ecosystems, from plankton to fish, from the tropics to polar regions. This simulation also offers insights on ocean acidification over the past 64 years, as well as how large scale climate variations may impact upper trophic levels. The data generated by the simulations are publicly available and will be a fruitful community resource for a large variety of oceanographic science questions.
Continue reading ‘From nutrients to fish: impacts of mesoscale processes in a global CESM-FEISTY eddying ocean model framework’Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios
Published 24 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, morphology, otherprocess, physiology, prokaryotes, sediment, South Atlantic
Mangroves are coastal environments that provide resources for adjacent ecosystems due to their high productivity, organic matter decomposition, and carbon cycling by microbial communities in sediments. Since the industrial revolution, the increase of Greenhouse Gases (GHG) released due to fossil fuel burning led to many environmental abnormalities such as an increase in average temperature and ocean acidification. Based on the hypothesis that climate change modifies the microbial diversity associated with decaying organic matter in mangrove sediments, this study aimed to evaluate the microbial diversity under simulated climate change conditions during the litter decomposition process and the emission of GHG. Thus, microcosms containing organic matter from the three main plant species found in mangroves throughout the State of São Paulo, Brazil (Rhizophora mangle, Laguncularia racemosa, and Avicennia schaueriana) were incubated simulating climate changes (increase in temperature and pH). The decay rate was higher in the first seven days of incubation, but the differences between the simulated treatments were minor. GHG fluxes were higher in the first ten days and higher in samples under increased temperature. The variation in time resulted in substantial impacts on α-diversity and community composition, initially with a greater abundance of Gammaproteobacteria for all plant species despite the climate conditions variations. The PCoA analysis reveals the chronological sequence in β-diversity, indicating the increase of Deltaproteobacteria at the end of the process. The GHG emission varied in function of the organic matter source with an increase due to the elevated temperature, concurrent with the rise in the Deltaproteobacteria population. Thus, these results indicate that under the expected climate change scenario for the end of the century, the decomposition rate and GHG emissions will be potentially higher, leading to a harmful feedback loop of GHG production. This process can happen independently of an impact on the bacterial community structure due to these changes.
Continue reading ‘Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios’Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta
Published 23 July 2024 Science ClosedTags: abundance, biological response, BRcommunity, chemistry, community composition, laboratory, molecular biology, mollusks, morphology, North Pacific, otherprocess, physiology, prokaryotes
The intestinal microflora of host, vital for nutrient absorption and immune regulation, can experience dysbiosis under environmental stress, thereby potentially enhancing host susceptibility to pathogenic invasion. The impact of ocean acidification on bivalves is substantial, yet its effects on the intestinal microflora remain poorly understood. This study employed high-throughput 16S rRNA sequencing technology to investigate the variations in the intestinal microflora of Sinonovacula constricta between the control group (CON) and the seawater acidification group (OA) at different time points.After exposure to OA, changes in the composition of the intestinal microflora of S. constricta were observed, with no significant difference in α-diversity between the acidified and control groups. At the phylum level, there was an increase in the abundance of Proteobacteria, while Cyanobacteria decreased in the OA14d and OA35d groups. Additionally, the relative abundance of Firmicutes increased in the OA7d and OA35d groups. At the genus level, the relative content of Pseudomonas was lower than that in the control group, while the relative content of Flavobacterium, Acinetobacter, and Enterobacter showed a gradual increasing trendin the OA14d and OA35d groups.. LEfSe analysis identified Serpens as discriminative biomarkers in the OA7d group, while Enterobacteriales, Rhodobacteraceae and Martvita were biomarker in the OA14d group, and Serpens, Acidibacteria and Aeromonadaceae were biomarker in the OA35d group. Functional prediction results indicated significant enrichment in metabolic pathways at different time points following ocean acidification stress… The pathways involved in biosynthesis in the OA14d group and in sucrose degradation in the OA35d group were significantly disrupted. These results suggest that OA stress can have adverse effects on the intestinal microflora of S. constricta, but it does not cause obvious damage to the digestive system. This study provides new insights into the intestinal microflora of marine bivalves under acidification stress.
Continue reading ‘Impact of ocean acidification on the intestinal microflora of Sinonovacula constricta’
