As the largest active carbon reservoir on Earth, the ocean is a cornerstone of the global carbon cycle, playing a pivotal role in modulating ocean health and the Earth’s climate system. Understanding these crucial roles requires access to a broad array of data products documenting the changing chemistry of the global ocean as a vast and interconnected system. This review article provides an overview of 68 existing ocean carbonate chemistry data products and data product sets, encompassing compilations of cruise datasets, derived gap-filled data products, model simulations, and compilations thereof. It is intended to help researchers identify and access data products that best align with their research objectives, thereby advancing our understanding of the ocean’s evolving carbonate chemistry. The list will be updated periodically to incorporate new data products. The most up-to-date list is available at https://oceanco2.github.io/co2-products/ (Gregor and Jiang, 2026).
Continue reading ‘Synthesis of data products for ocean carbonate chemistry’Posts Tagged 'field'
Synthesis of data products for ocean carbonate chemistry
Published 5 March 2026 Science ClosedTags: chemistry, field, globalmodeling, modeling, review
High vertical resolution measurements of pH, pCO2, total alkalinity, and dissolved inorganic carbon using a new approach: the carbonate profiler
Published 4 March 2026 Science ClosedTags: Arctic, Baltic, chemistry, field, methods
The equilibrium between the different parameters of the marine carbonate system–dissolved inorganic carbon (DIC), total alkalinity (TA), partial pressure of CO2, and pH–is the core of ocean acidification studies, evaluation of inorganic carbon inventory, and air-sea CO2 fluxes. To date, it has been challenging to simultaneously measure all those components in the water column due to different sampling methodologies, and especially in stratified waters, where sharp vertical biogeochemical gradients may occur. In this study, we designed a low-cost and easy-to-assemble pumping system, which, combined with a CTD profiler, makes a PUMP-CTD system that can efficiently serve as a precise water column sampler, allowing for simultaneous measurements and sampling of dissolved inorganic carbon, total alkalinity, partial pressure of CO2, and pH with high vertical resolution. Importantly, this water sampler (denoted as the carbonate profiler) can be easily integrated with equilibrator-based continuous pCO2 measurement systems, which are routinely used for underway data acquisition, making them suitable for water column sampling as well. We tested the carbonate profiler in the open ocean water column, where we obtained excellent consistency between measured pCO2 and calculated values based on pH and DIC. Afterwards, we tested the operability of the system by measuring the vertical variability of all the components of the marine carbonate system in the Vistula River estuarine waters (southern Baltic Sea) and within the Arctic fjords affected by continental freshwater runoff. Overall, this system performed outstandingly, with a vertical resolution of half a meter, proving its utility in accurately measuring steep biogeochemical changes in the water column regardless of the analytical method used.
Continue reading ‘High vertical resolution measurements of pH, pCO2, total alkalinity, and dissolved inorganic carbon using a new approach: the carbonate profiler’Neglecting organic alkalinity introduces greater error than assuming boron to salinity ratios in Arctic sea ice brine carbonate system calculations
Published 3 March 2026 Science ClosedTags: Arctic, biogeochemistry, chemistry, field, methods
While total alkalinity (AT) is traditionally attributed to dissolved inorganic constituents, dissolved organic matter (DOM) can significantly contribute to AT as organic alkalinity (OrgAlk), introducing errors in calculated carbonate parameters, such as the CaCO3 saturation state (Ω) and partial pressure of CO2 (pCO2). This study presents measurements of OrgAlk in the Arctic Ocean sea ice system and assesses its influence on carbonate speciation, with OrgAlk contributing 0.1–1.0% to AT. Sea ice brine exhibited elevated DOM and OrgAlk, with an OrgAlk/DOC ratio of 0.13 ± 0.06 µmol kg− 1 µM− 1, consistent with global ocean values. Correcting AT for OrgAlk increased computed pCO2 up to 84 µatm and decreased Ω ≤ 0.2 for aragonite and ≤ 0.3 for calcite compared to un-adjusted values. Elevated brine pCO2 suggests that conventional estimates of Arctic sea ice CO2 uptake may be overestimated when AT is used as an input parameter, particularly in spring as OrgAlk is released. The omission of OrgAlk contributed greater errors to calculated carbonate parameters than the differences in boron from using direct measurements versus salinity based ratios, highlighting the necessity of accounting for even minor OrgAlk to refine predictions of surface pCO2, net air-sea CO2 flux, and the fate of CaCO3 minerals.
Continue reading ‘Neglecting organic alkalinity introduces greater error than assuming boron to salinity ratios in Arctic sea ice brine carbonate system calculations’Ocean acidification and changes in biological production in the western subarctic region of the North Pacific over the quarter century, 1999–2023
Published 2 March 2026 Science ClosedTags: Arctic, biogeochemistry, chemistry, field, North Pacific
Changes in the physical and biogeochemical conditions of the ocean over time can affect marine ecosystems. In this study, we use biogeochemical observational data for the past 25 years (1999–2023) to investigate ocean acidification and changes in biological production at site K2 (47˚ N, 160˚ E) in the western subarctic region of the North Pacific Ocean. During this period, satellite-derived sea surface temperatures increased at a rate of 0.056 °C yr–1, while the surface mixed-layer salinity decreased by 0.004 yr−1. As a result of the oceanic uptake of anthropogenic CO2 from the atmosphere, the deseasonalized annual mean surface mixed-layer pH and saturation states of calcium carbonate minerals of calcite and aragonite decreased at rates of 0.0013 ± 0.0004, 0.007 ± 0.003, and 0.004 ± 0.002 yr−1, respectively. These rates are consistent with those calculated for winter. Under these acidification conditions, no significant trends were observed in either the annual mean or winter concentrations of nutrients (phosphate, nitrate, and silicate), or in total alkalinity in the surface mixed layer. However, the decadal trends in nutrient concentrations show a significant increase in May and decrease in July. Net community production (NCP), which is an index of biological production, was estimated from differences in nutrient concentrations between winter and May or July. This analysis revealed significant decreasing trends in NCP from winter to May, followed by increasing trends from winter to July. The stoichiometric molar ratio of Si associated with the July NCP increase (P:N:Si = 1:15:55) is higher than the previously reported ratio (1:16:40). A significant decreasing trend in satellite-derived photosynthetically active radiation (PAR) was observed in May (0.20 ± 0.08 yr−1), which may be linked to reduced biological production during that month. This decrease may be offset by increased production in summer that is likely due to a shift in the timing of the diatom bloom. These findings highlight the effects of long-term changes of potential drivers of both atmospheric and deep oceanic origin on oceanic biological production.
Continue reading ‘Ocean acidification and changes in biological production in the western subarctic region of the North Pacific over the quarter century, 1999–2023’Range-extending fish become competitive dominants under ocean warming but not heatwaves or acidification
Published 27 February 2026 Science ClosedTags: biological response, field, fish, multiple factors, North Pacific, performance, temperature, vents
Ocean warming is driving species range extensions into cooler regions. The direct physiological influence of warming on species performance can accelerate such extensions into novel ecosystems; however, indirect effects of invader–resident interactions in cooler regions may counter these positive effects. Here, we examined the foraging performance and densities of competing warm‐water and cool‐water fishes across a latitudinal temperature gradient spanning 1500 km from tropical to temperate reefs subjected to rapid ocean warming in the southern hemisphere, and across natural analogs of temperate, tropicalized, and acidified reef localities in the northern hemisphere, and during a severe marine heatwave at a temperate reef. While current levels of ocean warming have allowed the warm‐water fish to extend their ranges into temperate ecosystems at both hemispheres, their foraging performance was reduced at both the cold‐ and warm‐temperate reefs compared to the (sub)tropical reefs. However, at the (warmer) tropicalized reef, the warm‐water fish had higher foraging performance and maintained densities, even under extreme pH reduction, compared to the temperate reef. In contrast, the cool‐water species struggled at the warmer tropicalized and extreme reefs with reduced foraging performance and lower population densities compared to the temperate reef. Contrastingly, the severe heatwave experienced at the temperate reef did not alter the foraging behaviors of either species. We suggest that ocean warming boosts the foraging performance of the range‐extending warm‐water fish and impairs that of their cool‐water competitor at temperate reefs, irrespective of acidification and heatwaves, leading to a shift in dominance hierarchies on temperate reefs. We conclude that warming‐driven increases in foraging performance of the warm‐water species may alleviate foraging limitations and enhance its establishment at its leading range edges under climate change, to the detriment of its cool‐water competitors.
Continue reading ‘Range-extending fish become competitive dominants under ocean warming but not heatwaves or acidification’Physiology and survival of intertidal calcifiers in two contrasting upwelling systems
Published 27 February 2026 Science ClosedTags: adaptation, biological response, field, laboratory, mollusks, morphology, mortality, otherprocess, physiology, South Pacific
Climate change alters the oceans’ temperature, pH, and oxygen concentration. These changes are expected to increase globally over the coming decades, affecting a wide range of marine organisms. Coastal upwelling zones, characterized by their high environmental variability, serve as ideal natural laboratories to study the potential impacts on marine organisms and ecosystems of temperature change, acidification, and ocean deoxygenation. The estimation of survival using capture‐mark‐recapture (CMR) data has been commonly applied to vertebrates, and to date, very few studies have been done on marine invertebrate organisms. In this study, we combined field CMR data and laboratory measurements to assess the physiological responses (metabolic rate and heart rate) and survival probability of individuals in two populations of intertidal mollusks, Chiton granosus and Scurria zebrina, in contrasting upwelling environments (i.e., semi‐permanent vs. seasonal). We found that (1) there are no differences between the two studied populations for heart rate in both species, (2) the S. zebrina population subjected to seasonal upwelling has a higher metabolism, (3) there are no differences in the calcification rate between the two studied populations of both species, and (4) survival is significantly higher in the semi‐permanent upwelling location for both species. Our findings highlight species‐specific responses to contrasting upwelling regimes, suggesting that phenotypic plasticity and survival differences may influence resilience under ongoing climate change.
Continue reading ‘Physiology and survival of intertidal calcifiers in two contrasting upwelling systems’Seawater pH fluctuations during the Ordovician to Silurian transition: insights from δ11B records in carbonates
Published 26 February 2026 Science ClosedTags: chemistry, field, North Pacific, paleo
Highlights
- A positive δ11Bcarb excursion has been observed during the Hirnantian coinciding with Gondwana glaciation.
- Seawater pH fluctuations during the OST are caused by declining atmospheric pCO₂, sea level fall and carbonate weathering.
- The fluctuation of seawater pH exerted a crucial role in the climatic changes and biotic evolutions during the OST.
Abstract
Environmental changes during the Ordovician to Silurian transition (OST) and the cause of Late Ordovician Mass Extinctions (LOMEs) remain a subject of debate. This study presents the first continuous seawater pH record spanning the Late Ordovician and Early Silurian, based on carbonate boron isotope (δ11Bcarb) data obtained from a carbonate-dominated section in South China. Our results reveal predominantly stable δ11Bcarb values throughout the Late Ordovician and Early Silurian, punctuated by a positive δ11Bcarb excursion during the Hirnantian coinciding with Gondwana glaciation. The calculated seawater pH pattern indicates a generally low pH baseline across the OST, temporarily interrupted by a transient increase in surface ocean pH coinciding with the glacial episode. These pH fluctuations are interpreted to result from a combination of factors, including declining atmospheric pCO₂ levels, sea level changes, weathering of carbonate rocks, and decomposition of organic matter. This study suggests that the fluctuation of seawater pH exerted a crucial role in the climatic changes and biotic evolution during the OST. The enhanced carbonate weathering and increased seawater pH, together with sea level fall and a reduction in shelf area, likely contributed to the decreased net accumulation of carbonates and represented a negative feedback for the development of glaciation and cooling climate. Given that the living of organisms (e.g. brachiopod, conodont, sponge and radiolarian) was sensitive to the changes in seawater pH, if and how the seawater pH fluctuations affected the LOMEs still needs more detailed work in the future.
Continue reading ‘Seawater pH fluctuations during the Ordovician to Silurian transition: insights from δ11B records in carbonates’Natural analogues of climate change can reveal fish responses across multiple levels of biological organisation
Published 26 February 2026 Science ClosedTags: biological response, field, fish, review, vents
Anthropogenic climate change is threatening ecosystem functionality and biodiversity globally. While significant research has been dedicated to understanding how organisms may respond to future climate change, most of these studies focus on individual levels of biological organisation in controlled laboratory settings, which often fail to capture the complexity of natural ecosystems. Organisms respond to climate stressors across various levels of biological organisation, which also involve complex interactions or feedback mechanisms among levels, making it difficult to generalise responses to climate change from laboratory experiments or single levels alone. Natural analogues provide a unique opportunity to observe complex ecological interactions in real-world environments with long-term exposure to climate change stressors. Here, we provide a systematic literature review to reveal how natural analogues of ocean warming and ocean acidification can be used to assess fish responses to climate change across multiple levels of biological organisation (from molecular to biogeographical scales) and to assess how cross-level buffering and feedback mechanisms may shape fish species persistence in a future ocean. We identify key knowledge gaps and propose research frameworks that integrate natural analogues with laboratory experiments, mesocosms, and predictive models to better capture the complexity of fish responses to climate stressors in a more holistic way. Finally, we highlight the importance of coordinated, cross-system research using multiple natural analogues to reveal adaptive mechanisms and strengthen predictions of fish community reorganisation under climate change.
Continue reading ‘Natural analogues of climate change can reveal fish responses across multiple levels of biological organisation’Ocean acidification modifies site fidelity and patterns of seagrass habitat use by a herbivorous fish
Published 25 February 2026 Science ClosedTags: algae, biological response, BRcommunity, field, fish, Mediterranean, morphology, performance, physiology, vents
Ocean acidification (OA), characterized by changes in seawater chemistry and a concomitant decline of pH due to the uptake by seawater of the atmospheric CO2, will profoundly shape marine ecosystems. The lower pH/higher pCO2 can act negatively (as a stressor for organisms with a calcareous exoskeleton) or positively (as a direct resource for primary producers like macrophytes). Consequently, herbivores may indirectly benefit from OA counteracting the direct negative effects of living under high pCO2/low pH conditions. Here, we investigated how OA may influence site fidelity, habitat use, and trophic behaviour patterns of Sarpa salpa, the main herbivorous fish associated with Posidonia oceanica meadows in the north-western Mediterranean Sea. We assessed if and how OA influences the habitat use of S. salpa by comparing natural tags, in otoliths and muscle tissues, between CO2 vents and reference pH sites. We did not find differences in otolith elemental composition and shape among fish exposed to different pH conditions (CO2 vent vs ambient pH sites). However, otolith isotopic signatures differed between life stages (young vs sub-adults), consistent with the variations observed in seawater-dissolved inorganic carbon across sites. Finally, comparisons of the nutritional value marine vegetation (macroalgae, P. oceanica, epiphytes) showed that P. oceanica and epiphytes were more nutritious at CO2 vents, along with increased consumption by S. salpa. This trophic separation indicates that S. salpa spent more time exploiting the trophic resources in the CO2 vents. Together, our findings shed new light on plant–herbivore interactions within P. oceanica meadows under future OA scenarios.
Continue reading ‘Ocean acidification modifies site fidelity and patterns of seagrass habitat use by a herbivorous fish’A biogeochemical perspective on acidification and buffering capacity in the Piscataqua Estuary
Published 18 February 2026 Science ClosedTags: biogeochemistry, chemistry, field, laboratory, North Atlantic, sediment
Coastal acidification is influenced not only by rising atmospheric CO2 and river-ocean mixing, but also by metabolic processes that alter seawater carbonate chemistry and buffering capacity. This study examines how sedimentary biogeochemical processes contribute to carbonate system variability in the Piscataqua Estuary, a tidally dynamic channel connecting Great Bay to the Gulf of Maine. The biogeochemical processes considered include sedimentary aerobic respiration, denitrification, sulfate reduction, and carbonate dissolution or precipitation. Two incubation experiments were conducted in September and October of 2024 at the University of New Hampshire’s Coastal Marine Laboratory (CML) to quantify changes in pH, dissolved inorganic carbon (DIC), and total alkalinity (TA) in the overlying water arising from sediment-water biogeochemical exchange. Sediment cores were collected to be paired with overlying water from slack low and slack high tides during each month. Across both experiments, sediment cores consistently exhibited greater acidification and larger shifts in DIC and TA concentrations compared to water-only cores, indicating strong sedimentary biogeochemical influence. Among the processes considered, sulfate reduction is likely the most influential driver of carbonate system variability, contributing to increases in both DIC and TA. Linking experimental results to in-situ measurements at CML revealed that variability observed over individual ebb or flood tides primarily reflected processes associated with tidal advection (ie, river-ocean mixing and water-column biogeochemical activity). However, when evaluating net changes over both tidal transitions (ebb and flood), contributions from sedimentary biogeochemical processes were comparable in magnitude to those of the other processes during September and October. Sedimentary biogeochemical processes also appear to exert more consistent contributions to DIC and TA than water-column biogeochemical processes. Together, these findings demonstrate that sedimentary biogeochemical processes play a major role in regulating carbonate system variability in the Piscataqua Estuary. This study underscores the importance of examining carbonate system variability across multiple timescales to obtain a more comprehensive understanding of estuarine carbonate dynamics. Additional experimental work is needed to further resolve the influence of metabolic processes on coastal carbonate systems under changing environmental conditions.
Continue reading ‘A biogeochemical perspective on acidification and buffering capacity in the Piscataqua Estuary’Linking surface pCO2 variability to physical processes along a continental shelf–ocean transect in the southwestern Atlantic Ocean during austral autumn and winter
Published 17 February 2026 Science ClosedTags: chemistry, field, South Atlantic
The southwestern South Atlantic Ocean is an important global sink of atmospheric carbon dioxide (CO2), driven by increased primary productivity in a nearby region where oligotrophic warm currents converge with nutrient-rich cold waters. However, uncertainties remain regarding CO2 dynamics and the role of physical processes in CO2 uptake across this region. Here, we assess variations in surface partial pressure of CO2 (pCO2) and air–sea CO2 fluxes in the Southwest Atlantic, along a transect from the continental shelf to the open ocean at 34.5°S during austral autumn 2018 and winter 2019. High-resolution spatial measurements of the temperature, salinity, and molar fraction of surface CO2 were conducted. In autumn 2018, the shelf region acted as a source of CO2 to the atmosphere (median of 3.2 mmol CO2 m-2 d-1), which was partially offset by a sink (median of –2.5 mmol CO2 m-2 d-1) in the open ocean. In contrast, the entire transect in winter 2019 presented median CO2 emissions of ~1.5 mmol CO2 m-2 d-1, which differs from climatological estimates. The spatial and seasonal variations in surface ocean pCO2 were linked to variable hydrodynamic processes, including water masses and mesoscale structures. Our findings reveal that, in one of the most productive oceanic waters worldwide, pCO2 may be influenced by distinct continental inputs (e.g., rivers, runoff, and groundwater discharge) and water masses (e.g., Tropical Water, Plata Plume Water and Subtropical Shelf Water). Therefore, the local hydrodynamic processes can modulate high spatial and seasonal variability in CO2 exchange at the ocean–atmosphere interface, with potential implications for regional and global carbon budgets. General results, such as climatological, cannot fully capture the influence of regional upwelling and continental water input, which highlights the importance of high-resolution regional observations.
Continue reading ‘Linking surface pCO2 variability to physical processes along a continental shelf–ocean transect in the southwestern Atlantic Ocean during austral autumn and winter’Seasonal air-sea CO2 flux dynamics in Colombia’s Gorgona Marine Area during La Niña 2021–2022
Published 17 February 2026 Science ClosedTags: chemistry, field, North Pacific
Air–sea CO₂ fluxes in tropical coastal zones are strongly influenced by ENSO variability, but in situ measurements in the Eastern Tropical Pacific remain scarce. We assessed seasonal CO₂ dynamics around Gorgona Island (Panama Bight, Colombian Pacific) under La Niña 2021–2022. From November 2021 to July 2022, we conducted monthly sampling at seven stations spanning the Guapi River plume to the open ocean, measuring physical (SST, SSS, thermocline depth), chemical (TA, DIC, pH, carbonate system parameters), and biological (chlorophyll-a) variables, and estimating net CO₂ fluxes (FCO₂) with the Liss and Merlivat (1986) parameterization and atmospheric CO₂ from NOAA. La Niña featured a cool-water anomaly (−0.78 °C), enhanced precipitation (+59%) and river discharge (+44%) relative to multi-year means. The nine-month mean CO₂ flux was near neutral (−0.01049 ± 0.00014 mol C m⁻²) but strongly seasonal: six post-upwelling months showed slightly positive fluxes (0.00929 ± 0.000147 mol C m⁻²) associated with high precipitation (746.4 ± 214.7 mm), warmer SST (27.5 ± 0.4 °C), elevated pCO₂w (567 ± 97.5 µatm) and lower pH (7.869 ± 0.040), whereas three upwelling months showed slightly negative fluxes (−0.00119 ± 0.00010 mol C m⁻²) with reduced precipitation (165.8 ± 82.4 mm), cooler SST (26.5 ± 0.2 °C), lower pCO₂w (461 ± 92.8 µatm) and higher pH (7.968 ± 0.048). La Niña amplified pCO₂w variability (316–839 µatm) via vertical Ekman pumping, horizontal transport (Zonal Ekman Transport, tides), and freshwater inputs, while a persistent thermocline (10–40.1 m) restricted deep CO₂-rich waters from reaching the surface. Biological uptake further modulated outgassing, as evidenced by chlorophyll-a and ΔDIC dynamics. Overall, CO₂ fluxes were relatively low compared with other tropical estuarine and oceanic sources. These results underscore the need for sustained in situ observations in estuarine–ocean systems to refine predictive models of CO₂ fluxes under ENSO conditions.
Continue reading ‘Seasonal air-sea CO2 flux dynamics in Colombia’s Gorgona Marine Area during La Niña 2021–2022’Summary of ocean acidification data collected by the National Coral Reef Monitoring Program in the U.S. Pacific Islands, 2021—2023
Published 10 February 2026 Newsletters and reports ClosedTags: biological response, BRcommunity, chemistry, corals, field, North Pacific, primary production
Coral reefs are among the most biologically diverse and economically valuable ecosystems on earth. They provide billions of dollars annually in food, jobs, recreation, coastal protection, and other critical ecosystem services (Brander & van Beukering, 2013; Costanza et al., 2014). However, these ecosystems are also among the most vulnerable to ocean acidification (OA). Even under the most optimistic model projections, increasing atmospheric and seawater carbon dioxide concentrations are likely to occur over the next few decades, decreasing seawater pH and reducing the availability of the carbonate ion (CO32-) building blocks that corals and other marine calcifiers use to construct reef habitat (Chan & Connolly, 2013; Jiang et al., 2023). OA threatens the persistence of coral reefs by reducing rates of coral and crustose coralline algae (CCA) calcification and accelerating rates of bioerosion, thereby lowering net production of calcium carbonate (CaCO3) and compromising the structural complexity and integrity of three-dimensional reef habitat (Cornwall et al., 2021; Hill & Hoogenboom, 2022). As a result, many of the ecological, economic, and cultural values offered by coral reefs could be significantly impacted by OA over the next century.
NOAA’s National Coral Reef Monitoring Program (NCRMP) provides a framework for long-term, national-level monitoring of the U.S.-affiliated coral reef areas. Funded jointly by the NOAA Coral Reef Conservation Program and Ocean Acidification Program, NCRMP assesses the status and trends of U.S. coral reef ecosystems and supports the management of the nation’s reefs (NOAA Coral Program, 2021). NCRMP’s long-term monitoring of OA and related coral reef ecosystem responses (NCRMP-OA) evaluates patterns and trends in carbonate chemistry and key ecosystem indicators across gradients of biogeography, oceanographic conditions, habitat types, and human impacts. These data sets are used to inform the efficacy of place-based coral reef management in close collaboration with federal, state, and jurisdictional partners.
To assess the progression of OA and impacts on coral reef ecosystems in the U.S. Pacific Islands, NCRMP-OA monitoring includes the following objectives:
- Conduct carbonate chemistry sampling to monitor spatial variability and temporal change in pH, aragonite saturation state (Ωar), and other carbon system parameters;
- Conduct diel carbonate chemistry water sampling and oceanographic instrument deployments at select sites;
- Conduct census-based carbonate budget assessments to estimate rates of coral reef biological carbonate production and erosion.
This report summarizes the monitoring effort and results from 2021–2023 NCRMP-OA sampling and surveys. Additional NCRMP environmental, benthic, and fish data are not included in this report, but they can be accessed at the links provided in the Data Availability section.
Continue reading ‘Summary of ocean acidification data collected by the National Coral Reef Monitoring Program in the U.S. Pacific Islands, 2021—2023’Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin
Published 9 February 2026 Science ClosedTags: abundance, biogeochemistry, biological response, chemistry, community composition, field, molecular biology, North Atlantic, otherprocess, prokaryotes, protists
Microbes are fundamental to ocean ecosystem function, yet they remain understudied across broad spatial and environmental scales in dynamic regions like the Gulf of America/Gulf of Mexico (GOM). We employed DNA metabarcoding to characterize prokaryotes (16S V4–V5) and protists (18S V9) across 51 stations, spanning 16 inshore–offshore transects and three depths. Cluster analysis revealed three clusters corresponding to depth zones that integrated vertical and horizontal sampling: photic zone (inshore near surface–bottom and offshore surface), deep chlorophyll maximum (offshore), and aphotic zone (offshore near bottom). We applied group-specific generalized additive models (GAMs) to log-transformed abundance data of major taxa in the photic zone, identifying key environmental factors that explained 42%–82% of the variation in abundance. SAR11 and SAR86 were positively associated with temperature and dissolved inorganic carbon, while cyanobacterial genera (Prochlorococcus and Synechococcus) were differently impacted by nutrients, salinity, and pH in ways that often followed their expected ecological niches. Representatives of protist parasites (Syndiniales) and grazers (Sagenista) showed group-specific nonlinear associations with salinity, oxygen, nutrients, and temperature. Using GAMs, we expanded the spatial resolution of DNA sampling and predicted surface log abundances at 84 cruise sites lacking amplicon data. Indicator analysis was performed with sequence-level data, revealing several protists that were indicative of more acidic waters and the absence of any significant prokaryote indicators. Our results provide the first basin-scale survey of microbes in the GOM and highlight the need for coordinated omics and environmental sampling to improve predictions of microbial responses to changing conditions.
Continue reading ‘Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin’Y/Ho ratios in marine sediments unveil Neoproterozoic ocean acidification
Published 28 January 2026 Science ClosedTags: biogeochemistry, chemistry, field, methods, paleo
Understanding Precambrian seawater pH is critical for unraveling Earth’s early marine environments and biospheric evolution. Yet, quantitative constraints remain elusive due to the lack of robust proxies. Here, we demonstrate that yttrium/holmium (Y/Ho) fractionation during adsorption onto marine sediments serves as a novel and reliable pH proxy. Experimental results reveal that Y/Ho fractionation in ferruginous sediments follows a pH-dependent power-law relationship, while in argillaceous sediments, it is jointly controlled by pH and salinity at low salinities (< 29‰) but stabilizes (KdY/Ho ≈ 0.4) at higher salinities (≥ 29‰). Temperature exerts a negligible influence, ensuring broad applicability across geological timescales. Leveraging these relationships, we develop a quantitative method to reconstruct paleo-seawater pH using Y/Ho ratios from coexisting ferruginous and argillaceous sediments. Validation against modern and Phanerozoic records confirms the proxy’s accuracy (e.g., pH 8.21 ± 0.22 for modern Pacific sediments). Application to Neoproterozoic meta-pelites and iron formations reveals prolonged oceanic acidification (pH 5.9–6.4), deviating from previous model-based neutral-to-alkaline estimates. This acidic state, likely sustained by CO2 outgassing from carbonatite-alkaline volcanism during Rodinia’s breakup, challenges conventional views of Precambrian ocean chemistry. Our findings provide a transformative tool for probing early Earth’s environmental dynamics and highlight the interplay between tectonics, magmatism, and marine pH evolution.
Continue reading ‘Y/Ho ratios in marine sediments unveil Neoproterozoic ocean acidification’Flow as a mediator of ecosystem engineering: hydrodynamics shape chemical modification by kelp and mussel beds
Published 28 January 2026 Science ClosedTags: algae, biological response, chemistry, field, North Pacific
Ecosystem engineers are organisms that modify their physical and chemical surroundings in ways that shape the structure and function of ecological communities. Physically, they build biogenic structures that modify flow, light, and habitat complexity. Chemically, they change oxygen and pH levels through metabolic processes such as photosynthesis and respiration. These modifications can either facilitate the presence of associated species by creating favorable microhabitats or inhibit them by amplifying environmental stress. Understanding the circumstances under which and how these shifts occur has become increasingly important as climate change intensifies environmental variability in coastal ecosystems. Advancing our understanding of how ecosystem engineers shape their communities requires considering how external factors, particularly flow, mediate their influence on the surrounding environment. Driven by tides, waves, and currents, flow regulates water residence time and thus the accumulation or dispersion of biologically modified water. Yet despite its central importance, the role of flow in controlling the strength and direction of ecosystem engineering remains poorly understood.
This dissertation examines how local hydrodynamics influences the capacity of marine ecosystem engineers to modify their surrounding chemical environments. It focuses on two contrasting but complementary systems: an autotroph, bull kelp (Nereocystis luetkeana), and a heterotroph, mussels (Mytilus spp.). Looking across these systems provides a broader view of how different types of engineers—those that produce oxygen through photosynthesis and those that consume it through respiration—shape their local chemical environments. By studying both systems, this work links two aspects of ecosystem engineering: 1) oxygen production and depletion, and 2) explores how flow determines when these species have the potential to act as facilitators or inhibitors within their communities. I combined field observations with laboratory and field experiments to explore how flow dynamics interact with biological traits, such as canopy structure, density, and behavior, to determine when these engineers act as facilitators or inhibitors within their communities. Across chapters, the work progresses from identifying environmental controls on kelp-driven chemical modification (Chapter 1) to isolating mechanistic feedbacks between flow, mussel behavior, and chemistry (Chapter 2), and then investigating density effects on chemistry and behavior by out-planting manipulated mussel aggregations in natural conditions (Chapter 3).
Continue reading ‘Flow as a mediator of ecosystem engineering: hydrodynamics shape chemical modification by kelp and mussel beds’Assessing sponge resilience to ocean acidification in natural reef environments
Published 28 January 2026 Science ClosedTags: biological response, BRcommunity, community composition, field, otherprocess, photosynthesis, porifera, prokaryotes, respiration, South Pacific, vents
Highlights
- Sponges are key components of coral reefs globally providing a range of important functional roles.
- We used in situ incubation chambers to measure chlorophyll concentrations, oxygen fluxes and microbial communities for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea.
- We found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities
- Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Abstract
Sponges are key components of coral reefs globally providing a range of important functional roles. While sponges are under threat from the impacts of global climate change, there is an emerging picture of sponge tolerance to ocean acidification (OA). However, to date all physiological studies on sponge tolerance to OA have been under ex-situ experimental conditions and only for a limited number of sponge species. Instead, here we used in situ incubation chambers to measure chlorophyll concentrations and oxygen fluxes for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea. We also explored differences between the sponge microbial community composition between control and vent locations for N. chaliniformis. We found very low concentrations of chlorophyll in both species, compared to other sponges, suggesting these species are largely heterotrophic. We also found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities, except some specific microbes. Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Continue reading ‘Assessing sponge resilience to ocean acidification in natural reef environments’Persistence of extreme low pH in a coralline algae habitat
Published 27 January 2026 Science ClosedTags: algae, biological response, chemistry, field, North Atlantic
Abstract
The extent of projected ocean acidification is partly dependent on the natural variability of marine carbonate chemistry—which is higher in coastal systems than in the open ocean. However, there are limited empirical studies quantifying the rate, magnitude and drivers of coastal environmental variability, preventing accurate assessments for how species and their associated communities may respond to projected climate change. Here, we quantified the annual variability of pH, temperature and dissolved oxygen in a coralline algae reef, a globally distributed biodiverse habitat that may be one of the most sensitive to projected climate change. We found that coralline algae and their communities are exposed to pH values as low as those projected for 2100 (even under a low emission scenario) for 63% of the year, including most of autumn and all of winter. Annual fluctuations in pH ranged by 0.46 units, with identifiable patterns at diel to seasonal timescales driven by various biogeochemical factors. Biologically driven patterns in dissolved oxygen and pH were coupled at multiple periodicities, and temperature was coupled to pH during the winter. Tidal cycling additionally modulated biological forcing of pH, increasing the complexity of intra-seasonal pH variability. Forecasting this environmental variability to the future led to projections of new pH extremes well beyond all IPCC emission scenarios. However, persistent long-term exposure to low pH may increase the acclimation and adaptation potential of coralline algae and their associated communities, providing a level of optimism for the continued survival of this habitat despite sensitivity to projected climate change.
Plain Language Summary
Here, we studied how the underwater environment naturally changes during the year on a coastal reef made of coralline algae, a type of red seaweed that builds reef habitats and supports diverse marine life. These reefs are thought to be especially vulnerable to climate change, particularly ocean acidification, which lowers the pH of seawater. Unlike the open ocean, coastal areas naturally experience more variability in pH, temperature, and oxygen. Monitoring these throughout the year, we found that the coralline algae reef already experiences pH levels as low as those expected for the year 2100. In fact, for about two-thirds of the year, including all of winter, the reef was exposed to these low pH conditions. We found that pH levels also varied a lot throughout the day and between seasons, influenced by biological activity of the algae and animals living in the reef, the ebb and flow of the tide, and water temperature. With some optimism, since long-term exposure to low pH is already experienced, these algae and their ecosystems may already be somewhat adapted to future conditions. This gives hope that they will be more resilient to future climate change than previously thought.
Key Points
- Coralline algae are naturally exposed to pH at or below future climate projections, especially during autumn and winter
- This is driven by an interaction between physical factors (temperature, tidal cycling) and biological processes (community metabolism)
- Given future climate projections, these pH lows may become more extreme, but prolonged exposure may increase coralline algae resilience
Climate change and ocean acidification pose a risk to underwater cultural heritage
Published 27 January 2026 Science ClosedTags: chemistry, field, laboratory, Mediterranean, socio-economy, vents
Ocean acidification caused by climate change drives a spectrum of ecological impacts on the marine environment, while also posing a lurking threat to the traces of human history lying on seabeds. We present a quantitative assessment of the climate change risk to underwater cultural heritage, focusing on the vulnerability of historical stone materials to shifting ocean pH levels. We monitored the amount and rate of stone surface material loss and textural alteration triggered by natural processes of mineral dissolution and biodeterioration in submarine settings, combining field and laboratory experimentations with climate models. Stone deterioration has been minimal in pre-industrial and present times; however, escalating anthropogenic emissions might lead to an exponential surge in vulnerability, with irreversible decay processes accelerating in the next decades and centuries, constrained by material properties and shifting biofouling dynamics. Ocean acidification will dramatically challenge the protection of underwater cultural heritage, demanding urgent preservation and adaptation policies.
Continue reading ‘Climate change and ocean acidification pose a risk to underwater cultural heritage’Core transcriptional plasticity pave the way for fish to succeed in a high-CO2 world
Published 26 January 2026 Science ClosedTags: biological response, BRcommunity, field, fish, molecular biology, performance, South Pacific, vents
Ocean acidification (OA) can alter the physiological and behavioural traits of marine fishes, raising concerns about how wild species will adapt to rising pCO2. Using natural volcanic CO2 vents at White Island, New Zealand, as analogues for future OA conditions, we quantified behaviours in situ and sequenced the brain transcriptomes of four highly site-attached fish species from two vents and a nearby control site with ambient pCO2, of which two species exhibit increased population densities at the vent. We found that two species showed changes in habitat preferences, and all four species with significant changes in gene expression related to circadian rhythm, visual perception, and energy metabolism at the vents. Strikingly, three differentially expressed genes, a heat shock protein (HS90A) and two immediate early genes (IEGs: JUN and FOS), were central regulators for transcriptional changes across all species at the vents. Within the circadian entrainment pathway, expression changes in opsins may act as a trigger, while core clock genes and IEGs function as downstream effectors, suggesting that elevated pCO2 may reset the circadian clock in these fishes. Notably, the two species with increased populations at the vents exhibited distinct transcriptional responses in genes involved in calcium signalling, reproduction, intracellular pH regulation and energy metabolism. Together with convergent evolution in a calcium signalling gene and an HS90 facilitator, these molecular features may confer their reproduction advantages and ability to cope with elevated pCO2. Our study provides novel insights into the molecular mechanisms underlying fish responses to OA and highlights key pathways that may support survival and ecological success under a naturally high-CO2 world.
Continue reading ‘Core transcriptional plasticity pave the way for fish to succeed in a high-CO2 world’
