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Climate change influence on salinity, temperature, dissolved oxygen and pH in Biscayne Bay (Florida): two decades of observations (2001–2021)

Published 8 April 2026 Science Closed
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Highlights

  • Research Highlight 1: Biscayne Bay is transitioning from an estuarine to a more marine regime due to sea level rise.
  • Research Highlight 2: Salinity is increasing at canal mouths, with saltwater intrusion detected in bottom layers.
  • Research Highlight 3: Global warming has raised Bay water temperature, and the past decade has been the warmest on record.
  • Research Highlight 4: Ocean acidification is influencing the Bay.

Abstract

An evaluation of 20 years (2001-2021) of monthly data from a long-term monitoring program was performed to determine the temporal, seasonal and spatial changes in the distribution of salinity, temperature, dissolved oxygen, and pH, to identify the potential impacts of climate change on Biscayne Bay, the largest estuary on the Atlantic coast of Florida. Data were evaluated by decade, season, and zone. Decade 2 showed higher salinity in four of eight zones, along with saltwater intrusion in the bottom layer of some canals. The zones most influenced by the Atlantic Ocean did not show decadal salinity changes. In decade 2, the overall median temperature in-creased (+0.5◦C), with North Bay exhibiting the highest increase (+0.8◦C). In decade 2, dissolved oxygen was higher in four zones, while pH decreased in six zones, suggesting that ocean acidification is also influencing the Bay. Temperature, dissolved oxygen, and pH displayed pronounced seasonal patterns across zones. Collectively, these results suggest that sea level rise and climate change are gradually transforming Biscayne Bay from an estuarine system to one that is more marine in nature.

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Effects of upwelling-driven acidification and deoxygenation on the dissolved inorganic carbon system over the southeastern Arabian Sea shelf

Published 8 April 2026 Science Closed
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Highlights

  • Summer monsoon upwelling drives strong acidification and deoxygenation over the EAS shelf.
  • Non-upwelling DIC and TAlk variability is largely governed by conservative water-mass mixing.
  • Elevated nDIC35 during upwelling confirms DIC enrichment beyond salinity stratification alone.
  • AOU-nDIC35 coupling indicates respiratory amplification of upwelled CO2-rich source waters.
  • Reduced buffering and lower ΩCa–ΩAr increase seasonal chemical stress on shelf ecosystems.

Abstract

Repeated measurements of inorganic carbon system parameters over one year along two coastal transects (Kochi in the southern EAS and Mangalore in the central EAS) in the eastern Arabian Sea (EAS) reveal strong seasonal coupling between upwelling, deoxygenation, acidification, and inorganic carbon accumulation on the shelf. During the non-upwelling (oxic) period, the variability of dissolved inorganic carbon (DIC) concentrations and total alkalinity (TAlk) was governed predominantly by conservative water-mass mixing, particularly between low-salinity Bay of Bengal-derived waters and more saline Arabian Sea shelf waters, as demonstrated by the marked reduction in salinity normalised DIC (nDIC35) and TAlk (nTAlk35). In contrast, during the summer monsoon (June–September), coastal upwelling transported oxygen-poor, DIC-rich subsurface waters onto the shelf, leading to pronounced subsurface inorganic carbon enrichment, hypoxia, and acidification. Vertical profiles of nDIC35 showed that elevated inorganic carbon concentrations persisted even after removing salinity effects, increasing from ∼1950–2000 μmol kg−1 at the surface to >2100–2200 μmol kg−1 below ∼40 m. Nearshore surface waters during peak upwelling exhibited a strong offset between measured DIC and nDIC35, indicating localized freshwater dilution, but salinity-normalised values confirmed that the underlying carbon inventory remained high. Apparent oxygen utilisation (AOU) and nDIC35 were positively correlated, indicating that a substantial fraction of the residual DIC enrichment was associated with oxygen consumption, although this relationship reflects the combined imprint of DIC-rich upwelled source waters and subsequent microbial remineralisation within the stratified shelf system. Thus, carbon accumulation during the summer monsoon is best explained by a two-stage mechanism: (i) physical advection of CO2-rich, oxygen-deficient upwelled waters, followed by (ii) secondary amplification through local respiration. In contrast, TAlk exhibited much weaker non-conservative modification, and the elevated alkalinity generated under low-oxygen conditions was insufficient to counteract the strong DIC-driven reduction in carbonate-system buffering capacity, thereby increasing the system’s vulnerability to pCO2 build-up and acidification. Consequently, calcite and aragonite saturation states declined sharply during upwelling, with ΩCa and ΩAr falling to ∼2.5 and ∼ 1.5, respectively, when pCO2 exceeded 1000 μatm under severe oxygen depletion. The co-occurrence of hypoxia, acidification, and weakened carbonate buffering characterises the eastern Arabian Sea shelf as a highly dynamic natural laboratory for understanding multi-stressor impacts on coastal biogeochemistry and ecosystem vulnerability.

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Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea

Published 7 April 2026 Science Closed
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The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.

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Millennial-scale changes in marine lithofacies during the Paleocene-Eocene Thermal Maximum: a deep-time analog for Anthropocene hydrologic and acidification impacts

Published 30 March 2026 Science Closed
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Highlights

  • Global marine sediment changes during the PETM were quantitatively reconstructed.
  • Sediment changes controlled by sea level and latitudinal hydrology.
  • Acidification influenced pelagic sediment composition, especially in the Atlantic.
  • Carbonate “overshoot” occurred during the PETM recovery.

Abstract

Extreme climatic events can significantly alter marine lithofacies. However, global oceanic sediment patterns during deep-time hyperthermal events, which are potential analogues for the hydrologic and climatic impacts of modern anthropogenic warming, remain poorly constrained. Here, we compile 162 marine stratigraphic records to track millennial-scale sediment dynamics during the Paleocene–Eocene Thermal Maximum (PETM). We find that sedimentation was primarily controlled by hydrologic intensification (resulting in ∼36% carbonate platform demise), eustatic fluctuations (resulting in ∼52% siliciclastic shelf retrogradation), and ocean acidification (resulting in ∼41% deep-sea calcareous sediment replacement). Lithofacies changes along continental margins show distinct latitudinal zonation, reflecting variations in hydrologic intensity and carbonate productivity. The impact of eustatic sea-level change is strongest in region where hydrologic effects are muted. Deep-sea acidification was widespread, with the strongest expression in the Atlantic, and weaker effects in the Pacific and Indian oceans. Widespread carbonate “overshoot” following PETM recovery suggests enhanced continental weathering. This study implies that ongoing anthropogenic warming could rapidly reorganize marine sedimentation through intensified hydrological cycle, accelerated sea-level rise, and ocean acidification on centennial timescales, much faster than during the PETM and potentially with greater magnitude.

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Individual foraminiferal analysis: a promising tool for high-resolution temperature and pH reconstruction

Published 27 March 2026 Science Closed
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Compared with traditional bulk foraminiferal analysis methods, in situ analysis of individual foraminiferal tests (individual foraminiferal analysis or IFA) offers several advantages over traditional bulk methods, including enhanced temporal resolution where fossiliferous sample material is limited as well as potentially resolving seasonal-scale climate variability in deep time. Despite these advantages, applications of element-to‑calcium (El/Ca) ratios and δ11B in benthic foraminifera using IFA remain limited, and the biogeochemical drivers of intra-test and inter-test geochemical variability are poorly constrained. In this study, we systematically evaluate El/Ca ratios and δ11B in individual benthic foraminifera. By analysing Holocene epifaunal benthic foraminiferal species Cibicidoides wuellerstorfi from a deep ocean core site (ODP Site 999), we conclude that intra- and inter-test variabilities are regulated by ontogenetic effects resulting in inter-test variabilities of ±0.14 mmol/mol Mg/Ca, ± 14 μmol/mol B/Ca, and ± 0.18 ‰ δ11B. Application of the IFA method to epifaunal benthic foraminifera species Cibicides lobatulus from a box core in the English Channel, UK reveals ~0.1 pH units acidification and ~ 1 °C warming since the mid-19th century. By demonstrating that individual-level variability in reconstructed temperature and pH tracks seasonal trends in the available contemporaneous water-column instrumental measurements at the same site, we provide a ground-truthing to our multi-proxy IFA methodology, and also demonstrate the potential for benthic IFA to provide seasonal-scale reconstructions of ocean climate over hundreds to millions of years.

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Resilient adults but vulnerable larvae: demographic pathways of chiton decline under ocean acidification

Published 26 March 2026 Science Closed
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Highlights

  • Natural CO₂ seep systems showed reduced intertidal chiton abundance.
  • Adult chitons showed resilience to acidification in field and lab experiments.
  • Larval survival and recruitment were strongly impaired under acidified seawater.
  • Population declines are linked to early life-stage vulnerability.
  • Loss of chitons may reduce grazing and bulldozing, reshaping intertidal communities.

Abstract

Ocean acidification (OA) is a major threat to marine calcifiers; however, the sensitivity across taxa and life stages remains elusive. In this study, we combined field surveys of natural CO₂ seeps with laboratory exposure, transplantation, and larval settlement experiments to assess the effect of OA on chitons, a group of calcifying grazers and bulldozers that play critical roles in the structure of rocky intertidal ecosystems. Field surveys revealed approximately 98.6% reduction in chiton (Acanthopleura loochooana, Liolophura japonica, and Acanthochitona rubrolineata) abundance at acidified habitats (pH 7.6), despite greater microalgal food availability and no detectable increase in predator abundance. Laboratory CO₂-exposure experiments showed no direct effect of OA on adult A. loochooana survival, which is consistent with the presence of protective structural features in the valves that confer resistance to dissolution. Transplant experiments revealed no evidence of increased adult A. loochooana mortality in the acidified habitats (pH 7.6). In contrast, larvae showed pronounced sensitivity to OA, with acidified seawater (pH 7.6) reducing larval settlement by approximately 81.5% compared to control conditions (pH 8.1); early life stages were the most vulnerable. These findings suggest that OA-associated decline in chiton abundance is mainly mediated by impaired recruitment rather than by direct adult mortality, predation, or food limitation. Given the role of chitons as grazers and bulldozers, their loss could substantially change intertidal community dynamics by decreasing grazing pressure and disturbing algal and microbial assemblages. Our findings underscore the criticality of considering life-stage vulnerability and ecological function when evaluating the ecosystem-level consequences of OA.

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The role of seagrass in modifying dissolved oxygen and pH in coastal systems: a meta-analysis

Published 26 March 2026 Science Closed
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Highlights

  • Seagrass productivity drives diel pH–DO variation, enhancing local buffering capacity
  • Oxygen–pH coupling highlights seagrass role in mitigating acidification during photosynthesis
  • Studies should integrate temperature, salinity, and light to parse biological drivers
  • Expanded geographic scope, especially tropics and Global South, is urgently needed
  • Standardized pH scales and advanced sensors to improve comparability and monitoring

Abstract

Seagrass meadows, highly productive ecosystems, can influence local water chemistry by increasing dissolved oxygen in the water column and removing dissolved CO2 thus raising pH. This study provides the first quantitative synthesis of literature comparing pH and dissolved oxygen (DO) between systems with and without seagrasses. Through a systematic literature review and meta-analysis, we collated and analysed data from 63 studies reporting pH values and 70 studies reporting DO. Across studies, seagrass habitats were associated with slightly higher mean pH relative to non-seagrass habitats. Seagrass habitats showed the highest mean pH (8.11 ± 0.30) and the greatest diel variability (0.47 ± 0.65) of all habitats investigated with unvegetated areas exhibiting lower mean pH and reduced variability. The diel pH range was also significantly higher in seagrass habitats (p = 0.024). The pooled standardized mean difference was small (0.15), indicating a modest overall effect of seagrass presence on pH across studies. Although mean DO concentrations were slightly lower in seagrass habitats compared to other vegetated systems, they experienced fewer hypoxic events (12% of values < 2 mg/L) compared to other vegetated systems (55%). Generalized additive models identified DO as the strongest predictor of pH, with minor contributions from temperature and salinity. Overall, seagrass habitats are associated with increasing average pH and reducing hypoxia across multiple sites and regions. However, the magnitude and direction of effects vary widely among studies (I2 = 97%). These findings indicate that seagrass influences on water chemistry are context-dependent and likely driven by interactions among biological processes and local environmental conditions. Key knowledge gaps were identified; including the need for a greater focus on H+ concentration and the need for more research on seagrass ecosystems in underrepresented geographical regions.

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Characteristics of meiofaunal community in the subtidal zone near Hupo, anticipating ocean acidification on the coast of Korea

Published 25 March 2026 Science Closed
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This study aimed to investigate the meiofauna community characteristics in coastal waters affected by ocean acidification. Therefore, the meiofauna communities in the coastal waters of Hupo in Uljin-gun, which showed a high ocean acidification trend in the integrated data on the coastal areas of South Korea for the previous ten years, were monitored over five years. During the study period, the mean abundance of total meiofauna communities expressed in population density was 614 individuals (Inds.)/10 cm2. The most dominant taxa were nematodes (65–70%) and harpacticoids (7–20%); these two taxa accounted for approximately 80% of the total meiofauna abundance. Station (St.) 5 and 10, which had the lowest seawater pH values, showed the lowest average abundance values for harpacticoids (average 46 Inds./10 cm2) and nauplius (average 4 Inds./10 cm2) among the major meiofaunal groups over the 5-year period. In addition, St. 5 indicated the lowest meiofaunal diversity index of 0.54. To examine the effect of ocean acidification on meiofauna communities at the species level, species of nematodes, the most dominant taxon, were analyzed. The results indicated that the number of nematode species at St. 10, one of the two stations with the lowest pH, was the lowest compared to those at other stations. Analysis of c-p values for nematode species ​​showed that both species sensitive to environmental disturbance and species resistant to environmental pollution appeared at high rates. According to the feeding type of nematodes, epistrate feeders accounted for a remarkably high proportion at St. 10. This study provides various data on meiofauna community characteristics to understand the effects of ocean acidification on coastal ecosystems.

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​​Long-term pH trends and spatiotemporal variability of the carbonate system in Jakarta Bay

Published 20 March 2026 Science Closed
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Jakarta Bay, an industrialized and densely inhabited coastal area, presents considerable environmental issues as a result of excessive organic pollution and nutrient inflow. Understanding the spatiotemporal variability of the carbonate system in such an affected bay is critical for assessing marine ecosystem health. The spatiotemporal variability of the carbonate system, pH, partial pressure of carbon dioxide (pCO2), total alkalinity (TAlk), and dissolved inorganic carbon (DIC) was investigated in Jakarta Bay during the rainy and dry seasons of 2023. pH datasets from 2011 to 2023 were also collected from the Environmental Agency of DKI Jakarta (DLH DKI Jakarta) for trend analysis. The temporal analysis shows that during the SE monsoon, the lowest pH (mean: 8.06 ± 0.43); lowest TAlk (mean: 2099 ± 340 µmol kg-1); highest pCO2 (mean: 879 ± 1177 µatm); and highest DIC (mean: 2068 ± 806 µmol kg-1) were observed. The pH distribution gradually increased from the river outlet to the outer bay; inversely, pCO2, TAlk, and DIC gradually decreased. Furthermore, from 2011 to 2023, pH in Jakarta Bay showed a slight upward tendency that was statistically insignificant, reflecting high variability and the influence of local biogeochemical processes. The carbonate system variability reflects changes in biogeochemical (Chl-a, DO and nutrients) and physical (SST and Sal) parameters. In addition, the semi-enclosed hydrodynamic properties, together with the influence of human activities, including a continuous supply of nutrients and organic materials from the mainland through the incoming rivers, further affected the balance of the carbonate system in the bay.

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Groundwater-derived carbon promotes hypoxia and acidification in a large tropical estuary

Published 18 March 2026 Science Closed
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Abstract

Submarine groundwater discharge (SGD) derived nutrient inputs have been extensively documented. However, SGD-derived carbon fluxes remain largely unconstrained, representing a critical gap in most coastal carbon budgets. Here, we resolve SGD and dissolved carbon budgets in the Pearl River Estuary (PRE), the largest estuary in Southern China surrounded by the world’s largest urban conglomerate. Broadly-defined SGD contributes 89%–96% of the dissolved inorganic carbon (DIC) pool (2–4 times riverine inputs) and 20%–70% of the dissolved organic carbon (DOC) fluxes of the PRE. SGD transports DIC exceeding total alkalinity (TAlk) by 2.7–7 times, potentially driving pH decline and acidification of nearshore waters. Groundwater pCO2 values are 10–36 times higher than estuarine waters. SGD-derived DOC mineralization can decrease estuary water pH by 0.04–0.16 units and increase CO2 by 6.0–90.0 μmol L−1, affecting local coral populations and benthic organisms. SGD also reduces seawater dissolved oxygen (DO) by 12–150 μmol L−1 and fuels the development of hypoxic zones. Overall, SGD regionally intensifies seawater hypoxia and acidification, creating challenging conditions for coral reef survival in an already stressed ecosystem. Our findings demonstrate that SGD should be integrated into carbon budgets and ecological assessments of the land-ocean continuum.

Plain Language Summary

Submarine groundwater discharge can transport large amounts of dissolved carbon into the coastal ocean, but it is often overlooked due to challenges in quantification. Here, we investigate the contribution of groundwater to the dissolved carbon pool in a large tropical estuary using radium isotopes and carbon data. We found that groundwater is a significant source of estuarine dissolved carbon and has the potential to acidify seawater oxygen-depleted waters. These findings emphasize the importance of considering groundwater when evaluating carbon budgets and the ecological health of coastal ecosystems.

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Seasonal variations and key controls on seawater aragonite saturation state in the Northern Yellow Sea, China

Published 17 March 2026 Science Closed
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Based on four field surveys conducted from August 2022 to May 2023, seasonal distribution and dynamics of the seawater aragonite saturation state (Ωarag) were investigated in the northern coastal zone of the Northern Yellow Sea, an important fishery region, to assess impacts of ocean acidification especially in river-dominated coastal systems. Results revealed seawater Ωarag had significant spatiotemporal variability with surface values ranging from 1.42 to 3.76 in summer, 1.22 to 2.34 in autumn, 1.71 to 2.48 in winter, and 2.03 to 3.56 in spring. Subsurface seawater Ωarag was generally lower than surface values, while seawater with Ωarag < 1.5—a critical threshold for severe biological stress—were predominantly found in the nearshore areas and in the southwestern offshore bottom waters. Persistent seasonal acidification was observed across the study area. While seawater temperature played an important role in seasonal Ωarag variation, its effect was masked in the nearshore zones by river-diluted water inputs, especially in summer, and in offshore bottom waters by community respiration during summer and autumn. These mechanistic insights clarify key drivers of coastal acidification and provide a scientific basis for developing targeted strategies to detect acidification trends and ecosystem responses in anthropogenically impacted coastal regions.

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Coulometric readout of ion-selective electrodes for an aquatic pH probe

Published 17 March 2026 Science Closed
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Ion-selective electrodes are widely used for the detection of ions in aqueous solutions such as natural waters. Their origin traces back to 1909 with the invention of the pH glass electrode. Nowadays, routine pH measurements are still performed by potentiometric measurements with glass electrodes. The phase-boundary potential difference at the glass membrane-sample interface, measured against a reference electrode, relates to solution pH following the Nernst equation. While being user-friendly, they suffer from multiple drawbacks. Firstly, their sensitivity is intrinsically dictated by the Nernst equation and is limited to 59.2 mV/pH at 25 °C. This might not be sufficient for applications where high precision pH sensing is required, such as ocean acidification monitoring. Secondly, a Nernstian response can only be obtained if all the other potential differences in the overall electrochemical cell are constant over the whole experimental procedure. This is not the case when, for example, the temperature or the ionic strength of the sample change during the measurement routine. The former influences the glass electrode itself, while the latter rather affects the reference electrode via liquid junction potential variations.

This thesis presents enhancements to the potentiometric experimental setup for pH sensing with glass or polymeric membrane pH electrodes, achieved through the integration of electronic components, chemical symmetry and open liquid junctions. A dynamic electrochemical readout called constant potential coulometry is explored for in situ pH sensing in coastal waters by implementation in a submersible probe deployed in the Krka River estuary in April 2025.

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Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents

Published 16 March 2026 Science Closed
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Seagrass meadows are natural carbon sinks, yet the effect of ocean acidification on their carbon burial capacity remains poorly understood. Here we investigated natural carbon dioxide vents in Ischia, Italy to assess how seawater pH influences carbon burial in an area dominated by the seagrass Posidonia oceanica. Organic carbon burial rates (mean ± standard error) between 1954 – 2021 were low under ambient conditions (1.5 ± 0.5 g m-2 yr-1) but increased sharply under acidified conditions (7 ± 1 g m-2 yr-1), reaching sevenfold higher values under extreme acidification (10 ± 3 g m-2 yr-1). Stable isotopes suggest that these patterns reflect changes in the relative contribution of seagrass, macroalgae, and epiphytes to buried carbon. These findings reveal that ocean acidification can substantially alter coastal carbon cycling, potentially through shifts in community composition, with important implications for understanding past and future feedbacks between seagrass ecosystems and the marine carbon cycle.

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Marine heatwaves, ocean warming and acidification reshape reef fish gut microbiomes

Published 16 March 2026 Science Closed
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Extreme climatic events and gradual climate change are increasingly anticipated to interact and reshape ecological communities. However, the combined effects of ocean warming, acidification and marine heatwaves on host‐associated microbial communities and their potential role in host adaptation remain poorly understood. Here, we assessed shifts in gut microbiome communities and their associations with physiological performance in one tropical ( Abudefduf vaigiensis ) and one subtropical ( Microcanthus strigatus ) reef fish species, across three temperate reefs representing natural analogues of climate change: a present‐day baseline (‘cool reef’), a chronically warmed reef (‘warm reef’) and a reef experiencing combined warming and extreme acidification (‘extreme reef’). We also examined gut microbiome changes in A. vaigiensis before and during a severe marine heatwave. A. vaigiensis had lower gut microbiome evenness and diversity at the warm (43% and 44% decrease, respectively) and extreme (38% and 31% decrease) reefs compared to the cool reef, and its gut microbiome community shifted at the extreme reef with a 122% increase in abundance of opportunistic bacteria Vibrio. A. vaigiensis also had lower gut microbiome richness at the warm (42% decrease) and extreme (52% decrease) reefs during the heatwave compared to pre‐heatwave individuals. In contrast, M. strigatus showed higher microbiome evenness (99% increase) and diversity (98% increase) at the warm reef compared to the cool reef; however, these gains were lost at the extreme reef, with microbiome diversity and evenness returning to cool reef levels. Microbiome changes in both species were generally not associated with their physiological performance (protein content, oxidative stress, antioxidant capacity or body condition). Our findings suggest that marine heatwaves, ocean warming and acidification can reshape reef fish gut microbiomes, driving simplification in Abudefduf vaigiensis but distinct restructuring in Microcanthus strigatus . We conclude that climate‐driven microbiome reshuffling may alter host–microbiome relationships and functions in fishes in a future ocean.

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Environmental controls and nonlinear responses of the diatom-dinoflagellate ratio in Jiaozhou Bay

Published 13 March 2026 Science Closed
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Highlights

  • Dia/dino abundance, biomass, and diversity ratios exhibited similar temporal patterns;
  • All ratios showed considerable heterogeneity without a consistent distributional trend;
  • Dia/dino ratios responded distinctly to DO, nutrients, and their interactions;
  • Shifting seawater properties exerted large influence on diatom-dinoflagellate dynamics.

Abstract

Diatoms and dinoflagellates are widely recognized as key indicators of marine ecosystem status and play central roles in ecosystem functioning and biogeochemical cycling. Yet how these two major phytoplankton groups adjust to changing coastal environments, and whether such adjustments occur coherently in different ecological dimensions, remains poorly constrained. Hence, we studied the temporal and spatial dynamics of diatom-dinoflagellate (dia/dino) ratios in Jiaozhou Bay during 2021 and 2024, integrating abundance-, carbon biomass-, diversity-, and richness-based metrics. Although abundance, biomass, and diversity ratios exhibited broadly similar temporal trajectories, the richness ratio displayed an opposite pattern, highlighting a decoupling between numerical dominance and species composition. Spatially, all four ratios exhibited significant heterogeneity, without a consistent nearshore-offshore gradient, reflecting complex local regulation. Correlation analyses revealed distinct controls on dia/dino ratios. The abundance ratio increased under conditions of elevated dissolved inorganic nitrogen (DIN) and reduced dissolved oxygen (DO), whereas the diversity ratio was associated with high DIN and low dissolved inorganic phosphorus (DIP). In contrast, the carbon biomass ratio was primarily linked to reduced DO and lower pH, while the richness ratio responded most strongly to the combined influence of low DO and elevated DIP. These contrasting responses indicated that dia/dino ratios captured different facets of phytoplankton community reorganization rather than reflecting a single environmental driver. Overall, our results suggested that the balance between diatoms and dinoflagellates in Jiaozhou Bay emerged from the coupled and nonlinear interactions among nutrient availability and oxygen dynamics. This study highlighted the dia/dino balance as an integrative indicator of coastal ecosystem condition and implied the importance of considering multiple ecological dimensions when assessing phytoplankton responses to ongoing eutrophication and environmental change.

Continue reading ‘Environmental controls and nonlinear responses of the diatom-dinoflagellate ratio in Jiaozhou Bay’

Trophic status and climatic stressors in the shallow coral reefs of the Cuban marine shelf

Published 12 March 2026 Science Closed
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The “Bojeo a Cuba” expedition (summer 2023) provided a synoptic, national-scale snapshot of oceanographic conditions around Cuba’s shallow coral reefs during a regional marine heatwave. At 66 sites across six regions, we evaluated key climatic stressors (sea surface temperature, pH, alkalinity) and trophic status indicators. Satellite-derived SST during each site’s sampling week revealed significantly warmer waters on the southern shelf (mean = 30.93 °C) than the northern shelf (mean = 29.21 °C, P < 0.01). In situ SST was consistently high (mean = 30.52 °C), documenting the heatwave’s intensity. pH (mean = 8.12) and total alkalinity (mean = 2343 µmol kg⁻¹) indicated a currently balanced carbonate system. Concentrations of dissolved inorganic nitrogen and phosphorus were below our methods’ quantification limits (1.61 µmol L⁻¹ for P-PO₄³⁻), while chlorophyll-a (mean = 0.04 µg L⁻¹) consistently classified waters as oligotrophic. This study establishes a critical summer baseline, confirming oligotrophic conditions while documenting the severity of thermal stress during the 2023 heatwave—the most immediate and uniform threat to Cuban reefs. Our findings underscore the vulnerability of these ecosystems to extreme warming events within the context of long-term Caribbean warming trends.

Continue reading ‘Trophic status and climatic stressors in the shallow coral reefs of the Cuban marine shelf’

Ocean acidification at the crossroads I: harmonizing unpurified and purified meta-cresol purple spectrophotometric pHT measurements based on absorbance data

Published 11 March 2026 Science Closed
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Consistent monitoring of seawater spectrophotometric pH on the total hydrogen ion scale (pHT) has been questioned by an evolving method, with changes in parameterization and the purity of the meta-cresol purple (mCP). Using real seawater samples, we demonstrate that spectrophotometric pHT measurements obtained with unpurified (UNPUR) and purified (PUR) mCP can be harmonized to within 0.003 pH units, the climate-goal threshold. This agreement is only achieved when mCP impurities at 434 nm are quantified for both the UNPUR and PUR mCP, assuming no impurities affect 545 nm absorbances, and impurity-corrected absorbance data at 434 nm are used in the same parameterization to calculate pHT. We applied this approach to a ship-based pHT time series transitioning from UNPUR to PUR mCP measurements. Our results show that previous claims suggesting that UNPUR mCP underestimates pHT in the upper pH range are misleading, as they were based on the inappropriate use of absorbances obtained with UNPUR mCP with a parameterization developed for PUR mCP. In fact, our data reveal better agreement between UNPUR and PUR pHT in the upper pH range of seawater, while UNPUR mCP tends to overestimate pHT in the lower pH range. These findings highlight the urgent need for the global chemical oceanography community to establish a spectrophotometric pHT method with full traceability to the International System of Units (SI), along with affordable and distributed certified reference materials and characterized purified mCP. This work supports the need for harmonization efforts to ensure the reliability of pHT data in global synthesis products.

Continue reading ‘Ocean acidification at the crossroads I: harmonizing unpurified and purified meta-cresol purple spectrophotometric pHT measurements based on absorbance data’

Two decades of skeletal density decline in Pocillopora spp. corals in the Mexican Pacific Ocean: insight into a tropical eastern Pacific acidification scenario?

Published 10 March 2026 Science Closed
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Corals demonstrate vulnerability to environmental changes, exhibiting the capacity to substantially modify coral calcification. In this study, we estimated declines in the density of Pocillopora coral species in the Mexican Pacific. The samples utilized in this study encompass both recently collected corals and those stored in Mexican repositories collected in the northeastern and southern Mexican Pacific regions. Density estimates indicate a 28.6% decline in coral density over the past 23 years (−0.0227 g CaCO3 cm-3 y-1) in the southern Mexican Pacific, while at the entrance to the Gulf of California, density has decreased by 15.4% over the past 20 years (−0.017 g CaCO3 cm-3 y-1). A comprehensive evaluation of environmental data reveals that the observed decline in Pocillopora skeletal density in Mexican Pacific reefs is concomitant with decreases in Ωar and pH, and an increase in ocean temperature on a substantial regional scale. When considered in conjunction with the previously documented reductions in coral growth of Pocillopora spp. skeletons in the eastern Tropical Pacific, our findings indicate a potential decline in CaCO3 production within the region’s reef systems. The results of this study underscore the significance of generating long-term series of coral growth parameters for relevant reef-building species and the carbonate system in key and representative coastal areas, particularly those that are already challenging for coral survival and reef maintenance.

Continue reading ‘Two decades of skeletal density decline in Pocillopora spp. corals in the Mexican Pacific Ocean: insight into a tropical eastern Pacific acidification scenario?’

Glacial meltwater impacts marine carbonate chemistry on Iceland’s continental shelf

Published 6 March 2026 Science Closed
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Increased meltwater runoff from glaciers may drive localized ocean acidification and impact carbon dioxide (CO2) uptake in the coastal ocean. However, the paucity of carbonate system observations from continental shelves receiving inputs from glaciers limits our understanding of cryosphere‐ocean connectivity. Here, we contrast meltwater impacts on seawater carbonate chemistry and stable isotopes (δ13C‐DIC) off marine‐ and land‐terminating glacier outflows off Iceland. On the shelf outside a marine‐terminating glacier, glacial meltwater reduced the seawater buffer capacity of receiving surface waters through dilution of total alkalinity, and increased CO2 uptake through salinity‐driven drawdown of pCO2. Primary production acted as a counterbalance to the lowered [TA‐DIC]. On the shelf area receiving meltwater from large glacial river deltas, CO2 uptake was almost halved and the saturation state of aragonite was 0.2 units lower than on the marine‐terminating glacier shelf. Reduced net autotrophy due to higher turbidity and upwelling of low‐pH deep waters off the delta‐dominated shelf likely explain those differences. The diverging carbonate dynamics on the two shelves build on previous observations that land‐terminating glaciers can reduce the buffer capacity as well as CO2 uptake potential of nearshore surface waters in comparison to marine‐terminating glaciers. The future retreat of many marine‐terminating glaciers onto land is likely to modify how meltwater will impact coastal seawater carbonate chemistry.

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Applying omics techniques to examine microscopic life fueling Gulf region ecosystems 

Published 6 March 2026 Press releases Closed
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Scientists at NOAA’s Atlantic Oceanographic & Meteorological Lab and the Northern Gulf Institute applied omics techniques to provide the first basin-scale assessment of the microbial communities at the base of marine ecosystems across the Gulf region. The new study from Dr. Luke Thompson’s group, conducted by Dr. Sean Anderson and co-authors, is the largest environmental DNA (eDNA) or microbiome survey of the Gulf of America ever performed.

Scientists collected environmental DNA (eDNA) – genetic material from whole microbes or shed by marine life into the environment – during the 2021 Gulf and Ocean Monitoring Ecosystems and Carbon Cruise (GOMECC). These samples unlock crucial new insights into the microscopic life across an entire basin – from nearshore coastal ecosystems out to the open Gulf. By analyzing the microbial communities throughout the water column, we can better understand how they are being impacted by changing environmental conditions. 

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Changes in the composition of these microbial communities in any given region has cascading effects, influencing the biodiversity and feasibility of commercially viable species to survive and flourish in a specific region. Understanding how microbial diversity throughout the water column varies with changing conditions – changes in salinity, temperature, nutrient levels – could unlock key insights and provide early indicators of how entire ecosystems will be impacted by exacerbated environmental stressors, including ocean acidification. 

Continue reading ‘Applying omics techniques to examine microscopic life fueling Gulf region ecosystems ‘

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