Trace metals are key regulators of coral reef functioning, acting as essential micronutrients or toxic stressors depending on concentration, speciation, and biological regulation. Corals and their associated holobionts require metals such as iron, zinc, copper, manganese, cobalt, molybdenum, and vanadium for photosynthesis, antioxidant defense, calcification, and nutrient cycling, while elevated levels of these elements, and non-essential metals including cadmium, lead, mercury, and nickel can induce oxidative stress, disrupt metabolism, disrupt coral-algal symbiosis, and contribute to bleaching and mortality. This review synthesizes current knowledge on trace metals in corals using evidence from laboratory experiments, field studies, skeletal geochemistry, and omics-based investigations. The biological roles and regulation of trace metals within the coral holobiont, their physiological and molecular impacts across life stages, and the influence of biogeochemical cycling and environmental drivers on metal availability and exposure in reef systems are examined. Analytical and omics-based approaches for investigating coral and metal interactions are also evaluated. Altogether, current evidence indicates that coral responses to trace metals depend on external metal concentrations, physiological regulation and environmental context. As climate change and anthropogenic activities continue to modify ocean chemistry, redox conditions, and metal bioavailability, understanding these interactions will become increasingly important for anticipating coral responses to future environmental change. Substantial knowledge gaps remain regarding thresholds between essentiality and toxicity, interactions with climate stressors, and holobiont-level metal cycling. Addressing these gaps is essential for improving interpretation of coral metal records, predicting reef vulnerability, and informing effective conservation and management strategies in an increasingly anthropogenically altered ocean.
Continue reading ‘Trace metals in the coral holobiont: roles and regulation in a changing ocean’Posts Tagged 'physiology'
Community metabolism generates chemical legacies that alter coral physiology
Published 3 November 2026 Science Leave a CommentTags: biogeochemistry, biological response, communityMF, corals, field, mesocosms, multiple factors, photosynthesis, physiology, primary production, respiration, South Pacific
Coral reefs are among the world’s most diverse ecosystems and contribute substantially to ocean productivity and the carbon budget. Disturbances are shifting reefs to altered community states, yet how these new communities indirectly alter organismal physiology by modifying the local biogeochemical environment remains largely unknown. We investigated this biogeochemical feedback in a 25-d mesocosm experiment in Mo’orea, French Polynesia. We exposed the common coral Porites rus to the biogeochemical environments generated by three distinct communities representative of recent benthic states in this system: coral-, macroalgae-, and crustose coralline algae-enriched relative to a seawater-only control. While net community production was similar among communities, net community calcification was lowest in the macroalgae-enriched state. Across treatments, community metabolism drove changes in the organic and inorganic carbon pool, with net community production increasing both pH and dissolved organic carbon. Using structural equation modeling, we tested how these community-generated chemical legacies propagated through coral physiology. Elevated pH increased chlorophyll a content, which increased endosymbiont density, tissue biomass, gross photosynthesis, and respiration through a series of indirect pathways. Dissolved organic carbon had no detectable effect on downstream corals at 25 d. These results reveal a mechanistic pathway linking disturbance-driven shifts in benthic communities to coral performance. Altered community metabolism modifies local carbon chemistry, which reshapes symbiont physiology and ultimately influences host metabolic function. By identifying the pathways through which community states engineer their chemical environment, this study provides a framework for predicting coral performance and ecosystem trajectories as reefs transition away from coral-enriched states.
Continue reading ‘Community metabolism generates chemical legacies that alter coral physiology’Long-term stress induced by low bicarbonate alkalinity causes intestinal oxidative stress, gut microbiota imbalance and metabolic disorder in Scylla paramamosain
Published 3 November 2026 Science Leave a CommentTags: abundance, biological response, community composition, crustaceans, fisheries, molecular biology, morphology, mortality, North Pacific, otherprocess, physiology, prokaryotes
Highlights
- Low bicarbonate induces acid-base imbalance and oxidative stress
- Opportunistic pathogen Klebsiella is a potential biomarker of the LB group.
- Low bicarbonate affects chitin synthesis and gut barrier.
- Low bicarbonate affects NDAA and gut microbiota.
Abstract
To investigate the effects of low bicarbonate alkalinity on intestinal health of Scylla paramamosain, we systematically evaluated the growth survival, intestinal antioxidant enzyme activities, and expression profiles of genes involved in immunity, inflammation, apoptosis and osmoregulation under low alkalinity conditions. Meanwhile, integrated intestinal microbiome and metabolome analyses were performed. The results showed that low bicarbonate alkalinity significantly reduced the survival and molting rates of S. paramamosain. It markedly elevated the activities of intestinal SOD, CAT and GSH-Px, as well as the expression levels of inflammation-related genes (IL-16, RELISH, LITAF), apoptosis-related genes (CASPASE7, BAX, BCL2) and osmoregulation-related genes (NKA, NHE, Cl−/HCO₃−), while suppressing the expression of immune genes (proPO, ALF1, LZM) (P<0.05). Low bicarbonate alkalinity disrupted the intestinal microbiota structure of S. paramamosain, accompanied by a decreased abundance of the phylum Bacteroidota and a significant increase in the abundance of the genus Klebsiella (P<0.05). A total of 714 differential metabolites were identified by metabolomic analysis, which were mainly annotated into Fatty Acyls, Glycerophospholipids, and Steroids and steroid derivatives. Multiple carbohydrate metabolism pathways were significantly enriched and participated in the regulation of Fructose 6-Phosphate (F6P). Integrated microbiome-metabolome analysis revealed that N,N-dimethyl arachidonoyl amine (NDAA) may cooperate with intestinal microorganisms to regulate the stress tolerance of S. paramamosain under low bicarbonate alkalinity stress. Based on the physiological and biochemical characterization of the intestine, this study elucidated the adaptive characteristics of S. paramamosain under low bicarbonate alkalinity. The findings provide important theoretical basis and practical significance for the saline-alkaline aquaculture of S. paramamosain.
Continue reading ‘Long-term stress induced by low bicarbonate alkalinity causes intestinal oxidative stress, gut microbiota imbalance and metabolic disorder in Scylla paramamosain’Spat origin does not affect phenotypic plasticity in the farmed mussel Mytilus chilensis facing experimental acidification
Published 2 November 2026 Science Leave a CommentTags: biological response, calcification, fisheries, mesocosms, mollusks, morphology, multiple factors, origin, physiology, South Pacific
Phenotypic plasticity allows organisms to cope with environmental variability, yet its role in sustaining aquaculture systems in the face of global change stressors remains poorly understood. We conducted a 90-day mesocosm experiment to test whether spat origin influences morphological, physiological, and periostracum responses in the Chilean mussel Mytilus chilensis under sustained experimental acidified conditions. Juveniles were collected from two contrasting habitats: an estuarine and dynamic/fluctuating environment, strongly influenced by freshwater discharges, and a marine, more stable environment; and then exposed to two pH regimes (8.0 and 7.5). Morphological traits showed subtle origin effects: estuarine mussels tended to exhibit higher shell length and calcification rates, though origin × pH interactions were not significant. Physiological responses were largely similar between both seed sources, with metabolic rates remaining stable while the clearance rate increased under acidified conditions in both populations. Periostracum analyses revealed some non-significant variation in organic composition, but no consistent effects of the pH were detected. Together, these results suggest that M. chilensis relies on conservative metabolic maintenance combined with flexible clearance responses possibly to cope with natural acidification pulses, while also tolerating sustained low-pH conditions, with only weak signals of origin-driven divergence. Our findings highlight the importance of phenotypic adjustments over local origin, suggesting that spat provenance may not be a primary determinant of performance under projected acidification scenarios tested here.
Continue reading ‘Spat origin does not affect phenotypic plasticity in the farmed mussel Mytilus chilensis facing experimental acidification’Critical swimming speed in fish: measurement, determinants, and applications in aquaculture and fisheries management
Published 2 November 2026 Science Leave a CommentTags: biological response, fish, fisheries, methods, performance, physiology, review
Critical swimming speed (Ucrit) is widely used as a non-invasive and practical metric for quantifying swimming performance in fish. This review summarizes current advances in Ucrit research, focusing on measurement methods, environmental and biological determinants, and the underlying genetic and molecular mechanisms. We highlight key methodological developments, including step and ramp protocols, while addressing ongoing challenges such as the lack of standardized procedures and the limited comparability across studies. Environmental factors, including temperature, dissolved oxygen, salinity, and ocean acidification, strongly influence Ucrit, while intrinsic traits such as body size, sex, and physiological capacity further shape its variation. Recent studies have begun to uncover the genetic architecture of Ucrit, with evidence from heritability estimates, genome-wide association studies, and transcriptomic analyses pointing to a polygenic basis and a central role of energy metabolism and mitochondrial function. We further discuss the applications of Ucrit in aquaculture and fisheries management, including selective breeding, exercise training, fish passage design, and stock enhancement. Finally, we outline future research directions, emphasizing the need to establish standardized measurement frameworks, develop high-throughput phenotyping technologies integrated with artificial intelligence, and achieve multi-omics integration. Advancing these approaches will deepen our understanding of swimming performance and facilitate the development of more efficient and sustainable aquaculture, while promoting continued innovation in fisheries science.
Continue reading ‘Critical swimming speed in fish: measurement, determinants, and applications in aquaculture and fisheries management’Adaptation to extreme environments: a review of Antarctic fish physiology
Published 2 November 2026 Science Leave a CommentTags: Antarctic, biological response, fish, performance, physiology, reproduction, review
Having evolved in the chronically cold and thermally stable waters of the Southern Ocean (SO) for millions of years, Antarctic fish possess a suite of physiological specializations that enable them to survive at temperatures near the freezing point of seawater. Adaptations include the evolution of antifreeze proteins, modifications of membrane composition, altered metabolic processes, unique mechanisms of oxygen transport and utilization, and distinctive cellular stress responses. This review synthesizes current knowledge of the physiological adaptations of Antarctic fish, focusing on the mechanisms that support survival in extreme cold environments. We examine adaptations related to cold tolerance, osmoregulation, metabolism, reproduction, sensory biology and oxygen transport and discuss the evolutionary processes that have shaped these traits. We further evaluate how ongoing climate-driven changes, including ocean warming, acidification and biological invasions, may affect Antarctic fish populations and ecosystems. Understanding the physiological foundations underlying Antarctic fish adaptation provides important insights into evolutionary responses to environmental extremes and provides a framework for predicting potential vulnerabilities of polar marine organisms in a rapidly changing world.
Continue reading ‘Adaptation to extreme environments: a review of Antarctic fish physiology’Tolerance measured at one developmental stage mispredicts climate resilience in an animal with a complex life cycle
Published 2 November 2026 Science Leave a CommentTags: adaptation, biological response, dissolution, growth, laboratory, mollusks, morphology, mortality, North Atlantic, otherprocess, physiology, reproduction
Forecasts of whether marine species can evolve fast enough to survive climate change rely largely on single-stage tolerance assays, tacitly assuming that tolerance measured at one developmental stage reflects adaptive capacity across the organism’s life cycle. We test this assumption in a common marine bivalve (Mercenaria mercenaria) and find that it fails in sign, not degree: larval and post-metamorphic tolerance to end-century ocean acidification are strongly negatively correlated (r = −0.53, 95% CI [−0.69, −0.33]) across family-level, pedigree-conditioned and animal model estimates, with pervasive rank reversals among the top performers of each stage. A multivariate analysis of the among-family covariance matrix G shows why: under acidification, 57% of the among-family variance collapses onto a single dominant axis that loads positively on every larval trait and negatively on every post-metamorphic trait, whereas under ambient conditions the same families show no cross-stage covariance at all. Acidification therefore does not merely depress performance—it reorganizes the genetic architecture into a cross-stage conflict. Under ramping RCP 8.5 forcing this conflict geometry dictates the direction—not merely the magnitude—of adaptation: only balanced multi-stage selection preserves family diversity, whereas single-stage selection systematically erodes the opposite axis. In complex life cycles, resilience is a geometric property of ontogeny that forecasts cannot compress into a single-stage without inverting the sign of the answer.
Continue reading ‘Tolerance measured at one developmental stage mispredicts climate resilience in an animal with a complex life cycle’Current knowledge of marine crustaceans in Mauritius and their global importance in a changing climate
Published 30 October 2026 Science Leave a CommentTags: abundance, biological response, community composition, crustaceans, fisheries, otherprocess, performance, physiology, reproduction, review
Marine crustaceans are ecologically and socio-economically important components of coastal and marine ecosystems; however, in Mauritius, knowledge of their biodiversity, functional roles, and responses to climate change remains limited and fragmented. This narrative review synthesizes available information on Mauritian marine crustaceans, with particular emphasis on the class Malacostraca, while identifying key knowledge gaps and research priorities relevant to their ecological importance and climate-change vulnerability at both local and global scales. Although existing records document 61 crustacean families in Mauritius, these data are sparse, outdated, and largely based on historical surveys, highlighting the urgent need for updated inventories and long-term monitoring. Globally, marine crustaceans act as trophic intermediaries, ecosystem engineers, and scavengers, contributing to nutrient cycling, sediment dynamics, and habitat stability. They support fisheries, aquaculture, tourism, and cultural practices, and provide valuable bioresources such as chitin, chitosan, and other bioactive compounds with applications in regeneratiom engineering, medicine, agriculture, environmental remediation, and biotechnology. Trade patterns further emphasize their economic importance, revealing export-oriented dynamics in Mauritius, instead of local consumption, that result in a net reliance on imports. Climate change poses an escalating threat through ocean warming, acidification, and increasing environmental variability, affecting DNA repair, protein synthesis, haemolymph, metabolic performance, calcification, reproduction, immunity, behavior, and species interactions. These stressors are further compounded by habitat degradation, altered symbiotic interactions and food-web disruption. The scarcity of empirical studies from Mauritius underscores the need for integrative, multi-stressor, and long-term research to support effective conservation, fisheries management, and climate resilience.
Continue reading ‘Current knowledge of marine crustaceans in Mauritius and their global importance in a changing climate’Abrupt pH changes overestimate the responses of Chaetoceros muelleri to ocean acidification
Published 30 October 2026 Science Leave a CommentTags: adaptation, biogeochemistry, biological response, globalmodeling, growth, laboratory, modeling, molecular biology, otherprocess, photosynthesis, physiology, phytoplankton, primary production, protists
Ocean acidification, characterized by a gradual seawater pH decline, influences marine primary producers such as diatoms, which contribute substantially to oceanic carbon fixation. Experimental studies aiming to project climate change impacts often simulate acidification via abrupt pH shifts, potentially misrepresenting ecological and evolutionary responses. Here we conduct a long-term evolution experiment with the marine diatom Chaetoceros muelleri, comparing abrupt and gradual CO2 increases from 440 to 1000 ppm over 1100 generations. Integrating evolutionary genomics, physiological assays, elemental stoichiometry, and Earth System Modeling, we find that abrupt acidification exaggerates diatom growth and carbon fixation responses by up to 15%, driven by enhanced divergent genomic signals and persistent gene expression changes. Gradual acidification elicits weaker phenotypic and genomic shifts, aligning more closely with natural ocean conditions. These findings suggest that models based on abrupt CO2 increases may overestimate the contribution of Chaetoceros muelleri and maybe also other diatoms to productivity and biogeochemical cycling under ocean acidification, highlighting the importance of gradual pH decline in experimental designs to accurately predict marine ecosystem responses.
Continue reading ‘Abrupt pH changes overestimate the responses of Chaetoceros muelleri to ocean acidification’Monsoon-linked gut microbiome variation in a tropical sea urchin: a single-reef case study from the Arabian Sea
Published 29 October 2026 Science Leave a CommentTags: biogeochemistry, biological response, community composition, echinoderms, field, Indian, molecular biology, otherprocess, physiology, prokaryotes
Highlights
- Stomopneustes variolaris gut microbiota shows clear seasonal structuring in response to monsoon-driven biogeochemical variability.
- The gut microbiota of Stomopneustes variolaris is dominated by Bacteroidota, and most diverse during winter and spring inter-monsoon.
- Gut microbial composition covaries with seasonal oxygen, pH, temperature, and nutrient gradients.
- The sea urchin gut microbiome shows seasonal plasticity under monsoon-linked stress.
Abstract
Tropical coastal ecosystems of the Eastern Arabian Sea (EAS) experience pronounced monsoon-driven shifts in water-column biogeochemistry, yet their influence on the gut-associated microbiomes of benthic invertebrates remains poorly understood. Sea urchins are ecologically important grazers in reef-associated habitats, and their gut microbiota may reflect both environmental and dietary variability. Here, we provide an exploratory characterisation of the gut-associated microbiome of the sea urchin Stomopneustes variolaris from the Grande Island archipelago (Goa, India) across four monsoon-associated periods: Winter monsoon (WM), Spring-inter monsoon (SIM), Summer monsoon (SM), and Fall-inter monsoon (FIM). Using 16S rRNA gene sequencing, we analysed gut tissue and gut digesta from S. variolaris alongside environmental samples (seawater, sediment, and seaweed). Bacteroidota dominated the urchin gut microbiome, whereas Proteobacteria were more abundant in environmental samples. Gut microbial diversity was highest in WM and SIM and lowest during SM and FIM. Exploratory analyses indicated that gut microbial composition varied temporally, with taxa affiliated with sulphur-cycling lineages more prevalent during sampling points associated with low-oxygen monsoon phases (SM and FIM) and Firmicutes and organic matter-associated taxa more prominent during comparatively oxygenated periods (WM and SIM). Ordination analyses suggested an association between gut and environmental microbial assemblages and gradients in dissolved oxygen, temperature, pH, nutrients, and pCO2. This study provides baseline insights into the gut microbiome of a tropical echinoid from an understudied region and highlights monsoon-associated patterns in microbial community composition, forming a foundation for future functional and experimental investigations.
Graphical abstract
How ocean acidification makes marine fish reproduction vulnerable: physiological mechanisms and ecosystem consequences
Published 29 October 2026 Science Leave a CommentTags: biological response, fish, fisheries, mortality, multiple factors, physiology, reproduction, review, temperature
Highlights
What are the main findings?
- Ocean Acidification (OA) disrupts the HPG axis, reducing sex steroids and vitellogenesis.
- OA impairs gamete quality, sperm motility, egg integrity, and Ca²⁺ signaling.
- pH decline may weaken Dax1 repression of P450arom, but this remains unvalidated.
- OA plus warming often worsens reproductive dysfunction; multigenerational recruitment effects are still unknown.
What is the implication of the main finding?
- OA threatens fish recruitment, community structure, and fishery productivity/food security.
- Long-term, multigenerational, multi-stressor field studies are needed for effective management.
Abstract
Ocean acidification, driven by the absorption of anthropogenic carbon dioxide into seawater, poses a significant threat to marine environments and biodiversity. This comprehensive review examines the specific impacts of acidification on the reproductive physiology of fish, integrating recent advances in our understanding of gonadal development, gametogenesis, and early embryonic development. We synthesize current findings on how altered carbonate chemistry disturbs the reproductive system from gametogenesis and fertilization to larval development and beyond. Our analysis reveals that ocean acidification affects multiple physiological pathways, including disruption of the hypothalamic–pituitary–gonadal (HPG) axis, impairment of calcium signaling, and alterations in sex hormone synthesis. We propose a mechanistic model in which pH reduction may weaken Dax1-mediated repression of P450arom transcription, thereby dysregulating aromatase activity and leading to sex hormone imbalance that impairs gonadal development; however, this proposed mechanism requires direct experimental validation under ocean acidification, as the net outcome may be modulated by additional regulatory layers such as epigenetic modifications and other transcription factors. Furthermore, we discuss the synergistic effects of ocean acidification with temperature elevation and other stressors, which often exacerbate reproductive dysfunction. This review concludes that no multi-generational study has yet evaluated HPG axis disruption to population-level recruitment failure, a critical gap for fishery resource assessment. We emphasize the critical importance of multi-generational and field-based studies to fully understand these impacts, which is essential for forecasting consequences for global marine biodiversity and the long-term sustainability of fisheries.
When oceans acidify: metal toxicity, uptake–depuration, and ion homeostasis in the copepod Nitokra sp.
Published 28 October 2026 Science ClosedTags: biological response, crustaceans, laboratory, metals, mortality, multiple factors, physiology, zooplankton
Highlights
- Seawater pH affected metal toxicokinetics, but not toxicity in Nitokra sp.
- Seawater pH affected Cu, Zn and Cd toxicokinetics, but not toxicity in Nitokra sp.
- The highest bioconcentration factor was observed for Cu at pH 8.1.
- Acute Cu, Cd, and Zn exposure did not reduce significantly copepod Ca or Na at pH 8.1 and 7.6.
- Copepod Ca declined 48 h after Cd exposure ended, indicating Cd-induced ionic imbalance.
Abstract
Mechanisms governing metal kinetics help maintain trace element levels required for physiological functions and ion regulation in aquatic organisms. However, both essential and non-essential metals can become toxic at excessive concentrations. Water physicochemical properties, including pH and dissolved anions, influence metal speciation, bioavailability, and toxicity. Under acidic conditions, bioavailability may increase as H+ competes with metal cations for binding sites, increasing free metal ions. Greater bioavailability may also disrupt uptake of essential macronutrients such as calcium (Ca) and sodium (Na) through competition at biotic binding sites. In the present study, we assessed the toxicity (half maximal lethal concentration [LC50]), toxicokinetics (bioaccumulation at the 10% lethal concentration [LC10] followed by depuration), and the impacts on Ca and Na levels of cadmium (Cd), copper (Cu), and zinc (Zn) in the estuarine copepod Nitokra sp. at pH 8.1 (natural) and pH 7.6 (acidified, as projected by the Intergovernmental Panel on Climate Change). All tested metals followed typical dose–response toxicity curves, with Cu being the most toxic, followed by Cd and Zn, with no significant differences between pH 8.1 and 7.6. Contrary to our hypothesis, bioconcentration factors were higher at pH 8.1 than at pH 7.6. Metal exposure did not significantly affect Ca and Na, but trends suggest early physiological disturbance, with Ca decreasing with exposure to Cd or Zn and increasing with exposure to Cu. During elimination, Ca levels were higher in Cu-exposed copepods than in Cd-exposed ones and similar to controls, suggesting that Cd competes with Ca at the cellular level.
Graphical abstract
Elevated pCO2 promotes growth but compromises PSII repair and antioxidant balance in the bloom-forming diatom Skeletonema costatum under ultraviolet radiation
Published 28 October 2026 Science ClosedTags: biological response, growth, laboratory, light, multiple factors, photosynthesis, physiology, phytoplankton, protists
Highlights
- Elevated pCO2 stimulates growth but not UV photoprotection in Skeletonema costatum.
- Ocean acidification constrains PSII repair and PsbA turnover under UVR.
- Trade-off between carbon-sequestration capacity and antioxidant defense raises UV sensitivity.
Abstract
Diatoms serve as key marine primary producers, driving global biogeochemical cycles, but their physiological performance is increasingly challenged by ocean acidification (OA) and enhanced ultraviolet radiation (UVR). This study investigated how OA caused by elevated pCO2 (1000μatm) modulates the UVR sensitivity of the bloom-forming diatom Skeletonema costatum. Elevated pCO2 significantly enhanced the specific growth rate by ~11.6%; it did not significantly aggravate the UVR-induced decline in Fv/Fm, but it constrained PSII repair and PsbA turnover, as indicated by lower rate constants for PSII repair (Krec, s−1) and PsbA removal (KPsbA, s−1), and was associated with a greater net decline in total PsbA content under PAR + UVR. Although elevated pCO2 upregulated the relative maximal electron transport rate (rETRmax) and light-saturation parameter (Ik), and maintained a higher RbcL/PsbA ratio consistent with a possible role of carbon assimilation as a downstream sink, it did not enhance the sustained non-photochemical quenching (NPQs). Furthermore, under elevated pCO2, CAT activity had a lower baseline; although CAT increased under UVR relative to PAR, its absolute activity remained lower, indicating an imbalanced antioxidant response. Collectively, these findings reveal a physiological trade-off: elevated pCO2 promotes growth and carbon-sequestration capacity but simultaneously compromises photoprotective mechanisms. Consequently, S. costatum grown under elevated pCO2 becomes more susceptible to UVR-induced photoinhibition, potentially suppressing photosynthetic production during surface blooms and influencing bloom persistence and carbon export.
Continue reading ‘Elevated pCO2 promotes growth but compromises PSII repair and antioxidant balance in the bloom-forming diatom Skeletonema costatum under ultraviolet radiation’Interactive effects of ocean acidification and benzophenone-3 on mussel physiology: a biomarker-based approach
Published 27 October 2026 Science ClosedTags: biological response, laboratory, mollusks, multiple factors, physiology, toxicants
Highlights
- Ocean acidification was the primary driver of biomarker responses.
- Low pH enhanced BP3-induced cytotoxicity in hemocytes.
- BP3 detoxification mainly involved the GST/GSH pathway.
- Lipid peroxidation occurred in gills and digestive gland despite antioxidant response.
- Acidification impacts biomineralization enzymes more strongly than BP3.
Abstract
Benzophenone-3 (BP3), a widely used ultraviolet (UV) filter in personal care products and industrial applications, is an emerging concern in aquatic ecosystems due to its lipophilicity, bioaccumulation potential, and toxicity to marine biota. Its occurrence in marine environments coincides with ocean acidification driven by rising atmospheric CO2 emissions, which disrupts the bicarbonate buffer system and reduces pH. This study investigated the acute effects (96 h exposure) of BP3 (at realistic concentrations of 0.2 and 2 μg/L) under 3 pH conditions (8.1- the current South Atlantic condition- and 7.6 and 7.3 as projected acidification scenarios for 2100 and 2300, respectively) in the brown mussel Perna perna. The effects were investigated through analysis of hemocyte viability and biomarkers related to detoxification (glutathione S-transferase, glutathione, glutamate cysteine ligase, and reduced glutathione), oxidative stress (antioxidant capacity against peroxyl radicals and lipid peroxidation), and biomineralization (carbonic anhydrase and Ca2+ATPase), measured in the gills, digestive gland, and mantle. Despite BP3-induced activation of glutathione-related detoxification pathways, as evidenced by increased GSH levels and GST activity, particularly in the gills, hemocyte viability decreased after BP3 exposure, with the greatest reduction at pH 7.3. Lipid peroxidation (LPO) also increased in the gills and digestive gland under acidified conditions, with the magnitude of the response varying according to BP3 concentration. CA and Ca2+ATPase activities were more strongly influenced by acidification than by BP3 exposure, although their responses were tissue-specific and, in some cases, modulated by BP3 exposure. Multivariate analyses identified pH as the primary driver of biomarker responses.
Graphical abstract
From population to individual: bulk and single-cell analysis reveal Fe bioavailability, limitation thresholds, and biological responses for marine diatom Chaetoceros debilis
Published 27 October 2026 Science ClosedTags: abundance, biological response, laboratory, metals, multiple factors, otherprocess, physiology, protists
Highlights
- Fe speciation and pH jointly regulated Fe bioavailability.
- A critical bioavailable Fe limitation threshold (∼10 nM) was identified for the marine algae.
- Single-cell analysis revealed previously hidden heterogenous Fe accumulation.
- Fe stress induced adaptive responses including metallome remodeling.
Abstract
In marine ecosystems, Fe fundamentally regulates algal productivity and drives biogeochemical cycling in the hydrosphere, yet its environmental controls and cellular responses remain insufficiently resolved, particularly at the single-cell level. Herein, we combined bulk and single-cell analysis to systematically investigate Fe bioaccumulation process in the marine diatom Chaetoceros debilis under varying Fe species, initial pH, and concentration conditions. Fe bioavailability followed the order Fe-ethylenediaminetetraacetate > Fe-deferoxamine B > Ferrihydrite and decreased with declining initial pH, highlighting the combined control of chemical speciation and ocean acidification. A critical bioavailable Fe limitation threshold of ∼10 nM was identified, below which algal growth, pigmentation, and cell size were significantly suppressed. Under Fe limitation, cells exhibited compensatory accumulation of other metals (e.g., Zn, Mn, Cu, and Ni), indicating metallome remodeling as an adaptive strategy. Notably, single-cell analysis revealed pronounced heterogeneity in Fe accumulation within populations, with heterogeneity positively related to bioavailable Fe levels. These findings demonstrate that algal Fe accumulation is governed by coupled environmental and physiological processes and that population-level averages mask critical cell-to-cell variability and their adaptive strategies under environmental stress. This work provides mechanistic insights into how environmental chemistry regulates metal bioavailability and biological responses, offering a broadly applicable framework for understanding the environmental behavior and ecological effects of trace metals and other contaminants in aquatic ecosystems.
Graphical abstract
Surviving together: evolutionary dependency, community dynamics, and mortality in marine microbial communities
Published 26 October 2026 Science ClosedTags: abundance, adaptation, biological response, community composition, growth, laboratory, light, molecular biology, mortality, multiple factors, nutrients, otherprocess, photosynthesis, physiology, phytoplankton, primary production, prokaryotes, reproduction, respiration, temperature
Oligotrophic regions of the world ocean sustain vast phytoplankton populations despite extremely low nutrient levels. However, the mechanisms governing their coexistence, interdependence, and mortality are poorly understood. This dissertation investigates how evolutionary dependency, community feedback, and regulated cell death (RCD) jointly shape the stability of marine microbial communities using the Prochlorococcus/Parasynechococcus/Alteromonas model system.
In Chapter 1, I argue that the Black Queen (BQ) hypothesis—which posits that microbes lose costly metabolic functions supplied by community partners—provides a unifying framework for understanding phytoplankton ecology. This framework helps resolve longstanding puzzles, including the paradox of the plankton and the evolutionary maintenance of RCD in unicellular organisms. Building on this framework, Chapter 2 uses transcriptomic analysis of Alteromonas in co-culture with picocyanobacteria to demonstrate that community composition induces greater changes in gene expression than pCO₂ alone. Reduced 2-phosphoglycolate/glycolate exudation by Prochlorococcus under elevated pCO₂ may disrupt the helper heterotroph effect underlying this cyanobacterium’s BQ dependency.
Chapter 3 integrates co-culture experiments, RNA-seq, metabolomics, and mathematical modeling to demonstrate that the stable coexistence of Prochlorococcus and Parasynechococcus is maintained by an “Ouroboros network” of feedback loops. In this network, resource competition, carbon exudation, BQ dependency, and possibly RCD collectively stabilize the community across environmental gradients and during adaptation to changing conditions.
Chapter 4 resolves the cellular mechanisms underlying RCD in these cyanobacteria, showing that differences in cell death modes and the number of checkpoint-linked mortality events between taxa are associated with divergent life-history strategies. These findings suggest that carbon released at these checkpoints may shape interactions with helper Alteromonas, linking individual cell death to community-level interdependencies.
In conclusion, these findings converge on a new resolution to the paradox of the plankton: coexistence in resource-limited environments emerges from interdependent metabolic exchanges, feedback, and regulated cell death shaped by multilevel selection. I propose that together, these processes form an “altruistic bargain” in which stability arises from self-constraint rather than competition alone. Because these interactions are environmentally sensitive, climate change, including warming and acidification, may disrupt the dependencies that sustain microbial diversity and ecosystem function in the world ocean.
Continue reading ‘Surviving together: evolutionary dependency, community dynamics, and mortality in marine microbial communities’Hypoxia and acidification antagonistically suppress nitrification but enhance its N2O production in coastal waters
Published 26 October 2026 Science ClosedTags: biogeochemistry, biological response, molecular biology, multiple factors, North Pacific, otherprocess, oxygen, physiology, prokaryotes
The concurrent intensification of hypoxia and acidification poses a growing threat to estuarine-coastal ecosystems globally, yet their interactive impacts on nitrification, a key process in the nitrogen (N) cycle and a substantial source of nitrous oxide (N2O), remain poorly understood. This knowledge gap hinders reliable projections of future N cycling and climate feedbacks in these critical ecosystems. Here, we demonstrate that along the estuarine-coastal continuum, the co-occurrence of hypoxia and acidification suppresses nitrification rates but stimulates nitrification-derived N2O emissions—although their combined effect is lesser than the sum of their individual effects. Metatranscriptomic analysis provided molecular evidence for these isotopically traced responses and uncovered critical microbial coping strategies through transcriptional adjustments in metabolic pathways for energy conservation and stress tolerance. This previously overlooked interaction disrupts microbial N cycling with potential impacts on N2O emissions and climate feedbacks, highlighting the necessity to revise predictive models by incorporating such multistressor dynamics.
Continue reading ‘Hypoxia and acidification antagonistically suppress nitrification but enhance its N2O production in coastal waters’Physiological responses of Atlantic surfclams (Spisula solidissima) to moderate ocean acidification across thermal regimes
Published 23 October 2026 Science ClosedTags: biological response, chemistry, fisheries, growth, laboratory, mollusks, morphology, multiple factors, North Atlantic, performance, physiology, respiration, temperature
Highlights
- Interactive effects of warming and acidification tested in surfclams.
- Growth, feeding, and metabolic rates measured after 6-week exposure.
- Moderate acidification had limited effects under warming conditions.
- Surfclams showed resilience to near-future ocean acidification.
- Multi-stressor design improves ecological relevance of lab studies.
Abstract
Understanding marine organismal responses to co-occurring climate stressors is critical for predicting changes in ecosystems and commercial fisheries. The Atlantic surfclam supports a major commercial fishery in the Northeastern United States, where ocean warming and acidification are rapidly altering marine habitats. To evaluate how changing ocean conditions may affect bivalve physiology, surfclams were exposed to conditions reflective of ocean warming and acidification, respectively. One-year-old surfclams were exposed to nine conditions in a fully crossed design of temperature (ambient, +2 °C, and + 5 °C) and pH (7.88 ± 0.05, 7.76 ± 0.05, and 7.51 ± 0.07) for six weeks in a flow-through laboratory experiment using natural seawater. We quantified several physiological responses including growth, feeding, digestion, respiration rates, and shell weight and thickness to assess organismal performance across treatments.
Surfclams generally exhibited resistance to moderate ocean acidification across warming, but non-thermally stressful, temperatures. No effects of ocean acidification were observed on surfclam growth or respiration, although other physiological metrics (shell thickness and absorption rate) decreased with decreasing pH at some temperatures. These findings provide experimentally-derived insight into species-specific responses to interacting climate stressors. Further, the experimental design highlights the importance of integrating natural environmental variability into laboratory studies and studying multiple environmental stressors concurrently. This study contributes a basis for refining models of surfclam growth and distribution in potential future climate scenarios, with implications for sustainable fisheries management.
Continue reading ‘Physiological responses of Atlantic surfclams (Spisula solidissima) to moderate ocean acidification across thermal regimes’Ocean warming and acidification reveal transcriptional plasticity in the gastropod Hexaplex trunculus
Published 23 October 2026 Science ClosedTags: biological response, molecular biology, mollusks, multiple factors, performance, physiology, respiration, temperature
Coastal ecosystems, particularly in the rapidly warming Mediterranean Sea, are increasingly impacted by climate change driven by ocean warming and acidification. Calcifying marine invertebrates are especially vulnerable, yet their molecular responses remain poorly understood. Gene expression dynamics in the ecologically and commercially important gastropod Hexaplex trunculus were investigated under simulated scenarios combining elevated temperature and reduced pH. High-throughput RNA sequencing was used to generate a de novo assembly of the foot transcriptome, followed by differential gene expression analyses to characterize molecular responses to individual and interactive stressors under high-emission (RCP 8.5) projections. The foot tissue – central to locomotion, adhesion, and environmental interaction – exhibited pronounced transcriptional changes in genes associated with calcium signaling, ion transport, aerobic respiration, muscle contraction, and transmembrane transport. Ocean acidification emerged as the dominant driver of transcriptional change, inducing substantial shifts in metabolic demand and ion regulatory pathways, which might suggest increased energetic costs and potential functional constraints. The results demonstrate marked transcriptional plasticity in H. trunculus under combined climate stressors. By providing foundational transcriptomic resources for this species and mechanistic insight into its response to projected environmental changes, this study advances the understanding of molecular processes in vulnerable Mediterranean gastropods and informs ecological assessment efforts in rapidly warming marine ecosystems.
Continue reading ‘Ocean warming and acidification reveal transcriptional plasticity in the gastropod Hexaplex trunculus’
