Global changes can profoundly affect the sex determination and reproductive output of marine organisms, disrupting the population structure and ecosystems. High CO2-driven low pH in the context of ocean acidification (OA) has been shown to severely affect various calcifiers, but less is known about the extent to which low pH influences sex determination and reproduction of marine organisms, particularly mollusks. This study is the first to report a biased sex ratio over multiple generations toward females, driven by exposure to high CO2-induced low pH environments, using the ecologically and economically important Portuguese oyster (Crassostrea angulata) as a model. This phenomenon, which we term pH-mediated sex determination (PSD), has no consequences for fecundity, gonadal development, or reproductive function in the offspring. Moreover, PSD persisted into a second year of reproduction and was inherited across multiple generations. Transcriptomic analysis indicates PSD is associated with the activation of the Wnt signaling pathway in females and inhibition of spermiogenesis-related functions in males. This work expands our understanding of environmental sex determination and highlights the possible impact of global changes on reproduction and population dynamics of mollusks and other marine organisms.
Continue reading ‘Low pH means more female offspring: a multigenerational plasticity in the sex ratio of marine bivalves’Posts Tagged 'molecular biology'
Low pH means more female offspring: a multigenerational plasticity in the sex ratio of marine bivalves
Published 7 January 2025 Science ClosedTags: biological response, field, laboratory, molecular biology, mollusks, North Pacific, reproduction
Gene expression changes in the seagrass Cymodocea nodosa individuals in response to aquatic acidification
Published 2 January 2025 Science ClosedTags: biological response, field, laboratory, molecular biology, phanerogams, photosynthesis
Human activities have caused a rise in atmospheric carbon dioxide (CO2) levels, leading to greater absorption of CO2 by oceans and causing ocean acidification (OA). This phenomenon, marked by a reduction in pH, represents substantial risks to marine ecosystems, including seagrass meadows. Seagrasses are vital elements of coastal ecosystems, performing important functions in carbon storage, stabilizing shorelines, and preserving biodiversity; however, reactions to OA are not well understood, especially in molecular terms. This research study examined alterations in gene expression within seagrass meadows, namely Cymodocea nodosa, in reaction to simulated OA conditions. A climate chamber system was used to adjust CO2 levels to simulate future projections of OA, specifically following the RCP 8.5 scenario. Gene expression dynamics were assessed by collecting samples at different time intervals across a 36-h period. Research has demonstrated that genes related to photosynthesis are suppressed quickly after being exposed to increased amounts of CO2. Gene expression levels were found to change often over time, which is crucial for adaptation and acclimatization. However, antioxidant genes have varied responses to OA, with CAT and SOD being downregulated in distinct ways. Our findings offer valuable insights into the molecular mechanisms of seagrass responses to OA. They highlight the significance of examining short-term responses when evaluating the susceptibility of coastal ecosystems to climate change.
Continue reading ‘Gene expression changes in the seagrass Cymodocea nodosa individuals in response to aquatic acidification’Ocean warming and acidification alter calcification and innate immune system gene expression in juvenile American lobsters, Homarus americanus
Published 27 December 2024 Science ClosedTags: biological response, crustaceans, laboratory, molecular biology, multiple factors, North Atlantic, temperature
Highlights
- Ocean warming and acidification affect gene expression in juvenile lobsters.
- De novo trascriptome used to assess gene expression and functional enrichment.
- Calcification and cuticle genes increased expression with warming and acidification.
- Innate immune system genes trended toward downregulation.
- Lobsters may be more vulnerable to injury or disease due to climate change.
Abstract
The Gulf of Maine, home to American lobster, Homarus americanus, is experiencing rapid ocean warming (OW) and acidification (OA) due to climate change. While some studies have investigated the effects of either ocean acidification (OA) or warming (OW) on lobsters, few explore the interaction of these stressors, particularly on gene expression. We evaluated the effects of OA and OW on early benthic juvenile lobster transcriptomics using RNA sequencing and RT-qPCR through two distinct aquarium experiments. Lobsters were reared under OW/OA conditions aligned with values predicted for 2100: decrease in pH by 0.3–0.4 units; mean sea surface warming of 2.89 °C. RNA was isolated from carapace hypodermal tissue in both experiments. The multi-stressor treatment in the RNAseq experiment had the greatest differential expression. Genes of interest pertaining to calcification and cuticle development were primarily downregulated under high temperature but upregulated under acidified and multi-stressor conditions. In the RT-qPCR experiment, crustin alone was significantly downregulated and only under the most extreme multi-stressor treatment. This gene along with the prophenoloxidase activating enzyme had expression that trended toward downregulation across all treatments, suggesting a possible correlation to immune suppression. Expression profiles for crustin and the calcification gene, carbonic anhydrase differed across treatments based on molt cycle timing, indicating that stressor impacts may vary depending on the molt cycle phase. Elevated temperature had a greater effect on the expression of calcification and cuticle development genes, though the direction of expression reversed with multiple stressors. These results indicate the impacts of OW and OA on early benthic juvenile lobsters are complex, possibly synergistic, vary with molt cycle, and potentially interfere with normal cuticle development, which may increase susceptibility to injury or disease.
Continue reading ‘Ocean warming and acidification alter calcification and innate immune system gene expression in juvenile American lobsters, Homarus americanus’Divergent responses of an armored and an unarmored dinoflagellate to ocean acidification
Published 24 December 2024 Science ClosedTags: biological response, growth, laboratory, molecular biology, physiology, phytoplankton
Highlights
- An armored and an unarmored dinoflagellate exhibited divergent responses to OA.
- The unarmored species presented a higher ability to withstand OA stress.
- Cell wall structure may play essential roles in response to OA stress.
- Unarmored dinoflagellates may have significant advantages in acidic oceans.
Abstract
Dinoflagellates, both armored and unarmored, with distinct cell wall difference, are being affected by elevated CO2-induced ocean acidification (OA). However, their specific responses to OA are not well understood. In this study, we investigated the physiological and molecular response of the armored species Prorocentrum obtusidens and the unarmored species Karenia mikimotoi to OA over a 28-day period. The results show that the two species responded differently to OA. Cell growth rate, particulate organic carbon (POC) content, and the activities of C4 pathway enzymes decreased in P. obtusidens under future acidified ocean condition (pH 7.8, 1000 μatm pCO2), but the activities of carbonic anhydrase (CA), ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), and superoxide dismutase (SOD) increased. Whereas cell growth rate, contents of Chl a and PON, and SOD activity altered insignificantly in K. mikimotoi, but contents of POC and total carbohydrate, and the activity of RubisCO increased while the activities of CA and C4 pathway enzymes decreased. Transcriptomic analysis indicates that genes associated with antioxidative response, heat shock protein, proteasome, signal transduction, ribosome, and pH regulation were up-regulated in P. obtusidens but down-regulated in K. mikimotoi. Notably, the synthesis of soluble organic matter (i.e., spermidine and trehalose) was enhanced in K. mikimotoi, thereby regulating intracellular pH and improving stress resistance. This study highlights the divergent response of the armored and unarmored dinoflagellates to OA, with the unarmored dinoflagellate exhibiting a higher ability to withstand this stressor. Therefore, caution should be exercised when predicting the behavior and the eventual fate of dinoflagellates in the future acidified ocean.
Continue reading ‘Divergent responses of an armored and an unarmored dinoflagellate to ocean acidification’Long-term warming and acidification interaction drives plastic acclimation in the diatom Pseudo-nitzschia multiseries
Published 17 December 2024 Science ClosedTags: adaptation, biological response, growth, laboratory, molecular biology, multiple factors, otherprocess, physiology, phytoplankton, temperature
Highlights
- Temperature shows stronger effects than CO2 on P. multiseries growth and stress reponses.
- Multi-omics analysis reveals phenotypic plasticity and molecular adaptations under long-term warming and acidification.
- Short-term experiments effectively predict long-term P. multiseries responses to combined temperature and CO2 changes.
Abstract
Ocean warming (OW) and acidification (OA) are expected to interactively impact key phytoplankton groups such as diatoms, but the underlying mechanisms, particularly under long-term acclimation, remain poorly understood. In this study, we investigated the responses of the toxic diatom Pseudo-nitzschia multiseries to combined changes in temperature (20 °C and 30 °C) and CO2 concentration (pCO2 400 μatm and 1000 μatm) using a multi-omics approach over an acclimation period of at least 251 generations. Physiological data suggest that elevated temperature, either alone or in combination with CO2, reduced the net photosynthesis and nitrate uptake rate, thus inhibiting P. multiseries growth. Conversely, elevated CO2 alone stimulated P. multiseries growth. Comparative genome analysis revealed the phenotypic plasticity in response to temperature and pCO2 variations, even after more than 251 generations acclimation period. Temperature was identified as the dominant environmental factor, showing stronger effects than CO2. Transcriptomic profiles indicated that genes involved in stress- and intracellular homeostasis such as Hsps, ubiquitination process and antioxidant defense were mostly down-regulated under long-term warming acclimation. This study demonstrates that P.multiseries responds similarly to both short-term and long-term experimental selection, suggesting that short-term experiments can be used to predict long-term responses.
Continue reading ‘Long-term warming and acidification interaction drives plastic acclimation in the diatom Pseudo-nitzschia multiseries’The dynamics of adaptive evolution in microalgae in a high-CO2 ocean
Published 13 December 2024 Science ClosedTags: adaptation, biological response, laboratory, molecular biology, multiple factors, otherprocess, phytoplankton, temperature
Summary
- Marine microalgae demonstrate a notable capacity to adapt to high CO2 and warming in the context of global change. However, the dynamics of their evolutionary processes under simultaneous high CO₂ and warming conditions remain poorly understood.
- Here, we analyze the dynamics of evolution in experimental populations of a model marine diatom Phaeodactylum tricornutum. We conducted whole-genome resequencing of populations under ambient, high-CO2, warming and high CO2 + warming at 2-yr intervals over a 4-yr adaptation period.
- The common genes selected between 2- and 4-yr adaptation were found to be involved in protein ubiquitination and degradation and the tricarboxylic acid (TCA) cycle, and were consistently selected regardless of the experimental conditions or adaptation duration. The unique genes selected only by 4-yr adaptation function in respiration, fatty acid, and amino acid metabolism, facilitating adaptation to prolonged high CO2 with warming conditions. Corresponding changes at the metabolomic level, with significant alterations in metabolites abundances involved in these pathways, support the genomic findings.
- Our study, integrating genomic and metabolomic data, demonstrates that long-term adaptation of microalgae to high CO2 and/or warming can be characterized by a complex and dynamic genetic process and may advance our understanding of microalgae adaptation to global change.
Comparative physiological and transcriptome analyses reveal the responses to ocean acidification challenge of Mactra veneriformis with different shell colors
Published 6 December 2024 Science ClosedTags: biological response, laboratory, molecular biology, mollusks, physiology, respiration
Mactra veneriformis is highly susceptible to ocean acidification (OA) due to its low shell hardness during its rapid growth period. In this study, oxygen consumption rate, ammonia excretion rate, and transcriptome sequencing of mantle tissue analyses were conducted in white and purple shell-color populations of M. veneriformis under OA stress (pH = 7.6). The findings indicated a significant rise in oxygen consumption rates and ammonia excretion rates following acidification in both the two shell colors, while the clams with purple color showed comparatively lower basal metabolic levels. Transcriptomic analyses demonstrated the expression of key genes related to fatty acid synthesis were significantly inhibited, whereas genes involved in calcification, osmoregulation, and immune response were upregulated under OA exposure in the two shell-color groups. However, some genes such as CA and HSP showed a population-specific response between the two shell-color populations. KEGG enrichment analysis revealed that the MAPK signaling pathway and protein processing in the endoplasmic reticulum were significantly enriched in the two acidification groups. This study provides valuable insights into the response of M. veneriformis to OA stress and also helps to predict the future breeding of valuable strains of M. veneriformis.
Continue reading ‘Comparative physiological and transcriptome analyses reveal the responses to ocean acidification challenge of Mactra veneriformis with different shell colors’Extreme environmental variability induces frontloading of coral biomineralisation genes to maintain calcification under pCO2 variability
Published 6 December 2024 Science ClosedTags: adaptation, biological response, calcification, corals, field, laboratory, mesocosms, molecular biology, otherprocess, photosynthesis, physiology, South Pacific
Corals residing in habitats that experience high-frequency seawater pCO2 variability may possess an enhanced capacity to cope with ocean acidification, yet we lack a clear understanding of the molecular toolkit enabling acclimatisation to environmental extremes or how life-long exposure to pCO2 variability influences biomineralisation. Here, we examined the gene expression responses and micro-skeletal characteristics of Pocillopora damicornis originating from the reef flat and reef slope of Heron Island, southern Great Barrier Reef. The reef flat and reef slope had similar mean seawater pCO2, but the reef flat experienced twice the mean daily pCO2 amplitude (range of 797 v. 399 μatm day−1, respectively). A controlled mesocosm experiment was conducted over 8 weeks, exposing P. damicornis from the reef slope and reef flat to stable (218 ± 9) or variable (911 ± 31) diel pCO2 fluctuations (μatm; mean ± SE). At the end of the exposure, P. damicornis originating from the reef flat demonstrated frontloading of 25% of the expressed genes regardless of treatment conditions, suggesting constitutive upregulation. This included higher expression of critical biomineralisation-related genes such as carbonic anhydrases, skeletal organic matrix proteins, and bicarbonate transporters. The observed frontloading corresponded with a 40% increase of the fastest deposited areas of the skeleton in reef flat corals grown under non-native, stable pCO2 conditions compared to reef slope conspecifics, suggesting a compensatory response that stems from acclimatisation to environmental extremes and/or relief from stressful pCO2 fluctuations. Under escalating ocean warming and acidification, corals acclimated to environmental variability warrant focused investigation and represent ideal candidates for active interventions to build reef resilience while societies adopt strict policies to limit climate change.
Continue reading ‘Extreme environmental variability induces frontloading of coral biomineralisation genes to maintain calcification under pCO2 variability’Varying effects of climate change on the photosynthesis and calcification of crustose coralline algae: implications for settlement of coral larvae
Published 4 December 2024 Science ClosedTags: algae, biological response, BRcommunity, calcification, corals, laboratory, molecular biology, multiple factors, photosynthesis, physiology, reproduction, temperature
Highlights
- Corals maintain settlement preferences under future climate conditions
- Future climate conditions negatively affect crustose coralline algae physiology
- Physiological responses to future climate conditions varied by algal species
Abstract
Coral recruitment is critical to the maintenance of healthy coral reef ecosystems. Many coral species settle preferentially on certain crustose coralline algae (CCA) (e.g., Hydrolithon boergesenii) over others (e.g., Paragoniolithon solubile). Calcifying organisms like CCA are particularly susceptible to ocean acidification (OA), and settlement behavior of larvae may be compromised as seawater temperatures increase (ocean warming; OW) and pH levels decrease as a result of climate change. Here, we examine the effects of future seawater conditions (OW and OA) on the calcification and photosynthetic efficiency of two CCA species, H. boergesenii and Pa. solubile. We also examine the effects of conditioning CCA in combined OA and OW on the settlement preferences of three coral species, Acropora palmata, A. cervicornis and Porites astreoides. Acropora palmata and Po. astreoides demonstrated a preference for H. boergesenii over Pa. solubile in choice experiments after short-term treatment (7–21 days) and this preference was not affected by future seawater conditions. A. cervicornis did not demonstrate a CCA preference under any treatment. Po. astreoides did not demonstrate a CCA preference in no-choice assays and settlement was unaffected by OW and OA even after the longest exposure (99 days). Both CCA had reduced photosynthetic efficiency after exposure to future seawater conditions. However, net calcification rate was reduced in H. boergesenii but not Pa. solubile after exposure to future seawater conditions. These results demonstrate that while climate change may differentially affect the physiological functioning of various species of CCA, coral settlement preferences are unlikely to be altered.
Continue reading ‘Varying effects of climate change on the photosynthesis and calcification of crustose coralline algae: implications for settlement of coral larvae’Seawater warming rather than acidification profoundly affects coastal geochemical cycling mediated by marine microbiome
Published 28 November 2024 Science ClosedTags: BRcommunity, community composition, laboratory, mesocosms, molecular biology, multiple factors, otherprocess, prokaryotes, sediment, temperature
Highlights
- The structure and function of coastal microbial communities are influenced by ocean warming and acidification.
- Elevated temperature more profoundly impacts microbial communities than does acidification.
- Warming promotes denitrification that may increase nitrogen loss.
- The nitrogen, sulfur cycles, and carbon-fixation pathways exhibit distinct variation patterns under warming.
Abstract
The most concerning consequences of climate change include ocean acidification and warming, which can affect microbial communities and thus the biogeochemical cycling they mediate. Therefore, it is urgent to study the impact of ocean acidification and warming on microbial communities. In the current study, metagenomics was utilized to reveal how the structure and function of marine microorganisms respond to ocean warming and acidification. In terms of community structure, Non-metric Multidimensional Scaling analysis visualized the similarity or difference between the control and the warming or acidification treatments, but the inter-group differences were not significant. In terms of gene functionality, warming treatments showed greater effects on microbial communities than acidification. After treatment with warming, the relative abundance of genes associated with denitrification increased, suggesting that ocean nitrogen loss can increase with increased temperature. Conversely, acidification treatments apparently inhibited denitrification. Warming treatment also greatly affected sulfur-related microorganisms, increasing the relative abundance of certain sulfate-reducing prokaryote, and enriched microbial carbon-fixation pathways. These results provide information on the response strategies of coastal microorganisms in the changing marine environments.
Continue reading ‘Seawater warming rather than acidification profoundly affects coastal geochemical cycling mediated by marine microbiome’The effects of ocean acidification on the olfactory system of the yellow shore crab, Hemigrapsus oregonensis
Published 27 November 2024 Science ClosedTags: biological response, crustaceans, laboratory, molecular biology, North Pacific, performance, physiology
Increases in atmospheric carbon dioxide (CO2) lead to ocean acidification (OA) which has been shown to alter olfactory behaviours in marine organisms. However, coastal regions experience CO2 levels greater than end-of-century open ocean predictions. I investigated the effects of OA on the olfactory system of the intertidal yellow shore crab, Hemigrapsus oregonensis. I hypothesized that given their variable natural environment these crabs are more tolerant to OA. Crabs demonstrated impaired olfactory behaviour after acute and long-term static exposures to OA. This impairment was correlated with a decrease in olfactory receptor protein expression and a 20% decrease in olfactory sensory neuron volume. Crabs exposed to fluctuating CO2 had intermediate behavioural responses and showed no changes in receptor expression. These results show that coastal crabs are affected by ocean acidification despite their variable natural environment, being particularly vulnerable during upwelling events and this impairment will likely worsen in the future.
Continue reading ‘The effects of ocean acidification on the olfactory system of the yellow shore crab, Hemigrapsus oregonensis’Chemical interactions between kelp Macrocystis pyrifera and symbiotic bacteria under elevated CO2 condition
Published 26 November 2024 Science ClosedTags: algae, biological response, community composition, molecular biology, otherprocess, physiology, prokaryotes, protists, reproduction
Kelps are pivotal to temperate coastal ecosystems, providing essential habitat and nutrients for diverse marine life, and significantly enhancing local biodiversity. The impacts of elevated CO2 levels on kelps may induce far-reaching effects throughout the marine food web, with potential consequences for biodiversity and ecosystem functions. This study considers the kelp Macrocystis pyrifera and its symbiotic microorganisms as a holistic functional unit (holobiont) to examine their collective response to heightened CO2 levels. Over a 4 month cultivation from the fertilization of M. pyrifera gametes to the development of juvenile sporophytes, our findings reveal that elevated CO2 levels influence the structure of the M. pyrifera symbiotic microbiome, alter metabolic profiles, and reshape microbe-metabolite interactions using 16S rRNA amplicon sequencing and liquid chromatography coupled to mass spectrometry analysis. Notably, Dinoroseobacter, Sulfitobacter, Methylotenera, Hyphomonas, Milano-WF1B-44 and Methylophaga were selected as microbiome biomarkers, which showed significant increases in comparative abundance with elevated CO2 levels. Stress-response molecules including fatty-acid metabolites, oxylipins, and hormone-like compounds such as methyl jasmonate and prostaglandin F2a emerged as critical metabolomic indicators. We propose that elevated CO2 puts certain stress on the M. pyrifera holobiont, prompting the release of these stress-response molecules. Moreover, these molecules may aid the kelp’s adaptation by modulating the microbial community structure, particularly influencing potential pathogenic bacteria, to cope with environmental change. These results will enrich the baseline data related to the chemical interactions between the microbiota and M. pyrifera and provide clues for predicting the resilience of kelps to future climate change.
Continue reading ‘Chemical interactions between kelp Macrocystis pyrifera and symbiotic bacteria under elevated CO2 condition’Symbiodiniaceae algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature
Published 25 November 2024 Science ClosedTags: biological response, BRcommunity, corals, laboratory, molecular biology, mortality, multiple factors, North Pacific, photosynthesis, physiology, primary production, protists, reproduction, respiration, temperature
Climate change destabilizes the symbiosis between corals and Symbiodiniaceae. The effects of ocean acidification and warming on critical aspects of coral survical such as symbiotic interactions (i.e., carbon and nitrogen assimilation and exchange) during the planula larval stage remain understudied. By combining physiological and stable isotope techniques, here we show that photosynthesis and carbon and nitrogen assimilation (H13CO3− and 15NH4+) in Pocillopora damicornis coral larvae is enhanced under acidification (1000 µatm) and elevated temperature (32 °C). Larvae maintain high survival and settlement rates under these treatment conditions with no observed decline in symbiont densities or signs of bleaching. Acidification and elevated temperature both enhance the net and gross photosynthesis of Symbiodiniaceae. This enhances light respiration and elevates C:N ratios within the holobiont. The increased carbon availability is primarily reflected in the 13C enrichment of the host, indicating a greater contribution of the algal symbionts to the host metabolism. We propose that this enhanced mutualistic symbiotic nutrient cycling may bolster coral larvae’s resistance to future ocean conditions. This research broadens our understanding of the early life stages of corals by emphasizing the significance of symbiotic interactions beyond those of adult corals.
Continue reading ‘Symbiodiniaceae algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature’Cross-talk between tissues is critical for intergenerational acclimation to environmental change in Acanthochromis polyacanthus
Published 21 November 2024 Science ClosedTags: adaptation, biological response, fish, laboratory, molecular biology, otherprocess, performance, physiology, reproduction
Organisms’ responses to environmental changes involve complex, coordinated responses of multiple tissues and potential parental influences. Here using a multi-tissue approach we determine how variation in parental behavioural tolerance and exposure to elevated CO2 influences the developmental and intergenerational molecular responses of their offspring in the coral reef fish Acanthochromis polyacanthus to future ocean acidification (OA) conditions. Gills and liver showed the highest transcriptional response to OA in juvenile fish regardless of parental OA conditioning, while the brain and liver showed the greatest intergenerational acclimation signals. Developmentally induced signals of OA, such as altered neural function in the brain, were restored to control levels after intergenerational exposure. Intergenerational CO2 exposure also enabled the offspring to adjust their metabolic processes, potentially allowing them to better meet the energetic demands of a high CO2 environment. Furthermore, offspring of OA-exposed parents differentially expressed a new complement of genes, which may facilitate intergenerational acclimatory responses. A genetic component of intergenerational plasticity also played a crucial role, with the parental behavioural phenotype largely determining the offspring’s transcriptional signals. Overall, our results reveal tissue-specific transcriptional changes underlying intergenerational plastic responses to elevated CO2 exposure, enhancing understanding of organismal acclimation to OA throughout the whole body.
Continue reading ‘Cross-talk between tissues is critical for intergenerational acclimation to environmental change in Acanthochromis polyacanthus’Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale
Published 14 November 2024 Science ClosedTags: adaptation, biological response, calcification, echinoderms, growth, laboratory, molecular biology, North Atlantic, otherprocess, physiology, vents
Highlights
- Arbacia lixula populations near CO2 vents show tolerance to acidification despite their vulnerable calcified structure.
- A. lixula population reveal genetic divergence and substructure in response to small-scale pH variation.
- Acidification potentially affects specific genes linked to growth, development, and calcification.
- lixula exhibits adaptability and plasticity to acidification, suggesting its potential resilience to cope with OA.
Abstract
Our study explores genomic signs of adaptation in A. lixula to different water pH conditions. To achieve this, we analysed the genomics variation of A. lixula individuals living across a natural pH gradient in Canary Islands, Spain. We use a 2b-RADseq protocol with 74 samples from sites with varying pH levels (from 7.3 to 7.9 during low tide) and included a control site. We identified 14,883 SNPs, with 432 identified as candidate SNPs under selection to pH variations through redundancy analysis. While all SNPs indicated genomic homogeneity, the 432 candidate SNPs under selection displayed genomic differences among sites and along the pH gradient. Out of these 432 loci, 17 were annotated using published A. lixula transcriptomes, involved in biological functions such as growth. Therefore, our findings suggest local adaptation in A. lixula populations to acidification in CO2 vents, even over short distances of 75 m, underscoring their potential resistance to future Ocean Acidification.
Continue reading ‘Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale’Drivers of biological diversity and responses to global changes in marine invertebrates
Published 12 November 2024 Science ClosedTags: adaptation, biological response, BRcommunity, community composition, corals, echinoderms, Indian, laboratory, molecular biology, otherprocess, reproduction
Human activities, in particular global changes (e.g., ocean warming – OW and ocean acidification – OA) are projected to drive some marine species to extinction within the coming decades. Marine invertebrates are amongst the most vulnerable to these changes due to the increased energetic cost to maintain intracellular pH homeostasis. To mitigate extinction, organisms may migrate, acclimate or adapt genetically. While these mechanisms are increasingly documented, they are not fully understood. This knowledge is critical for assessment of extinction risks, an important index for effective conservation and management of marine biodiversity. This thesis aims to increase our understanding on the drivers of biological diversity and sensitivity of marine invertebrates to OW and OA. Specifically, I assess (1) the quality of inferences on adaptive evolution in recent publications on responses of marine invertebrates to OW or OA and summarize the current knowledge and identify the gaps (Paper I); (2) the drivers of genetic diversity, structure, connectivity among Acropora austera populations across Mozambique coral reefs (Paper II); (3) the sensitivity to low pH in larvae of the sea urchin, Tripneustes gratilla, from subtidal and intertidal seagrass meadows with contrasting pH variability at Inhaca Island, Mozambique (Paper III); (4) the role of natural fluctuation in pH on the response of larvae of the sea urchin Echinus esculentus to low pH (Paper IV). Field genome scans surveys, laboratory experiments and systematic literature review were used. My systematic literature review (Paper I) highlights that publication on adaptive responses of marine invertebrates to OW or OA used more frequently strong methods for inferences of genetic change, such as common garden experiments and molecular genetic analysis. Methods for weaker inferences, such as comparison to model prediction, were less frequently used. On the other hand, reciprocal transplants, the stronger method for inferring adaptive change was less used in comparison with weaker methods such as phenotypic and genotypic selection. I also showed different levels of genetic variability and connectivity between populations of corals along the Mozambique coast. These geographic differences in levels of genetic diversity and connectivity may be explained by oceanographic factors and mode of reproduction of the corals (Paper II). Larvae of the sea urchin T. gratilla from Inhaca Island had reduced fitness when exposed to low pH. Moreover, larvae from adults collected in an intertidal habitat were more sensitive to low pH as compared to larvae from adults collected in a subtidal population. This result reveals population specific responses to low pH and challenges current theories that predict higher tolerance in individuals living in habitats with higher pH range (Paper III). Under present day natural variability in pH, the extreme low pH does not appear to be the main driver of biological responses in larvae of the sea urchin E. esculentus and adaptation to such conditions might be associated with a cost of plasticity but not a cost of canalization (Paper IV). Overall, this thesis shows that oceanographic factors and natural variability in pH influence the levels of genetic diversity and biological sensitivity in populations of marine invertebrates. These parameters should be considered to better evaluate the ability of marine invertebrates to withstand environmental changes and to sustain the provision of ecological functions, and guide conservation strategies.
Continue reading ‘Drivers of biological diversity and responses to global changes in marine invertebrates’Transcriptomic insights into the antagonistic responses of Antarctic marbled rockcod, Notothenia rossii, to elevated temperature and acidification
Published 6 November 2024 Science ClosedTags: biological response, fish, laboratory, molecular biology, multiple factors, North Pacific, temperature
Highlights
- N. rossii exhibits complex immune reactions to warming and acidification.
- Antagonistic gene expressions under combined environmental stressors identified.
- Comprehensive view on N. rossii’s resilience to climate change impacts.
Abstract
The escalating impacts of climate change, particularly ocean acidification and warming, are pivotal stressors for marine ecosystems and have profound effects on biota in polar regions. This study investigated the immunological responses of the Antarctic fish Notothenia rossii to environmental stressors indicative of future ocean conditions under the Intergovernmental Panel on Climate Change Shared Socioeconomic Pathways 5–8.5 scenario for 2100. We exposed N. rossii to conditions simulating present-day conditions: control, elevated temperature, acidification, and both stressors combined over six days. Utilizing RNA-Seq for comprehensive gene expression analysis, we identified significant upregulation and downregulation of immune-related pathways, highlighting a complex interplay of genes involved in complement and coagulation cascades, the intestinal immune network for immunoglobulin A production, cytosolic DNA sensing, natural killer cell-mediated cytotoxicity, and Interleukin 17 signaling pathways. Our findings revealed a predominantly antagonistic gene expression response, suggesting an intricate balance between energy allocation for maintaining homeostasis and the capacity of the immune system to combat stressors. This reflects a potential adaptive mechanism to combined environmental stressors, underscoring the complexity of immune responses in N. rossii and suggesting both potential vulnerabilities and resilience in the face of climate change. This study provides critical insights into the immunological impacts of acidification and warming on Antarctic marine species, emphasizing the need for further research to unravel the mechanisms underlying these observed changes and inform conservation strategies for polar ecosystems in a changing global climate.
Continue reading ‘Transcriptomic insights into the antagonistic responses of Antarctic marbled rockcod, Notothenia rossii, to elevated temperature and acidification’Effects of ocean warming with stable and fluctuating ocean acidification on seawater transition in Chinook salmon smolts
Published 1 November 2024 Science ClosedTags: biological response, fish, laboratory, molecular biology, multiple factors, North Pacific, physiology, temperature
Highlights
- The effects of ocean warming and acidification are a concern for declining fish populations worldwide
- Ecologically relevant climate change impacts on early marine migration of juvenile salmon is lacking
- Constant and fluctuating CO2 caused an ionoregulatory disturbance in Chinook salmon smolts following seawater entry
- Salmon were able to compensate these effects through increased expression of gill ion transporters
Abstract
Anadromous salmon populations are declining in the Pacific Northwest, with high mortality during the transition from fresh- to seawater as smolts, a stage particularly vulnerable to adverse environmental conditions. This study seeks to explore the impacts of warming and ocean acidification on the transition of life in freshwater to life at sea in Chinook salmon smolts. In a fully factorial experiment, we transitioned Chinook salmon from fresh- to seawater at current and future conditions of temperature (13 °C and 16 °C, respectively) and ocean acidification (400 and 1400 atm CO2), including a fluctuating CO2 treatment (between control and high CO2) that may be more representative of natural environmental conditions associated with upwelling and tidal cycling. We hypothesized that constant elevated CO2 levels would impair smoltification success immediately following seawater transfer, but that fluctuating conditions would be even more physiologically challenging. We predicted that elevated temperatures would exacerbate these effects. To test this, we measured plasma ion concentrations, gill Na+/K+-ATPase (NKA) isoform mRNA and protein expression, as well as condition indices in freshwater and following 1, 3, 6, and 18 days in seawater at the respective treatments. We confirmed the existence of gill freshwater and seawater isoforms of NKA (α1a and α1b, respectively) in Chinook salmon for the first time, and found an upregulation of both isoforms in the fluctuating CO2 treatment but a reduction of the number of NKA α1b cells 3-days post seawater transfer at 13 °C. At 16 °C, NKA α1b was upregulated in high CO2 levels, with an elevated hematocrit indicating fish were likely stressed. Taken together, plasma ions, gill NKA and condition indices revealed a complex response to interacting warming and acidification during the first few days in seawater, however there were no longer-term adverse physiological responses. Thus, Chinook salmon appear to be relatively resilient to near-future climate change.
Continue reading ‘Effects of ocean warming with stable and fluctuating ocean acidification on seawater transition in Chinook salmon smolts’
