Posts Tagged 'mollusks'

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Intracellular acid-base regulation mediates a trade-off between shell and somatic growth in a clam under ocean acidification

Published 9 April 2026 Science Closed
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Highlights

  • Clams actively regulate intracellular pH against ocean acidification via CAc
  • RNAi confirms CAc’s essential role in H+ efflux, measured by in vivo SIET.
  • A CAc-sAC-NKA network forms a conserved regulatory pathway for acid-base balance.
  • DEB model shows this pH defense sustains shell linear growth despite metabolic costs.

SUMMARY

Ocean acidification (OA) is predicted to threaten marine bivalves, casting them as passive victims of changing carbonate chemistry. Contributing to a revised understanding, we identified a conserved mechanism for acid-base regulation that supports intracellular resilience. Using the Manila clam Ruditapes philippinarum as a model, this study demonstrated that intracellular pH (pHi) homeostasis under elevated pCO2 was maintained through cytosolic carbonic anhydrase (CAc)-mediated H+ efflux. A causal link was established by combining in vivo scanning ion-selective electrode technique (SIET) with RNA interference (RNAi), where RpCAc knockdown suppressed H+ efflux and compromised pHi. A coordinated regulatory network involving CAc, soluble adenylyl cyclase (sAC), and Na+/K+-ATPase (NKA) was synergistically upregulated, suggesting an evolved adaptive pathway. Dynamic Energy Budget (DEB) modeling, calibrated with experimental data, revealed that this cellular compensation carries a high energetic cost, leading to a significant reallocation of resources: shell growth was maintained, but somatic growth was severely suppressed. These results elucidate a conserved cytoprotective mechanism that enables short-term tolerance of OA at a substantial somatic cost, redefining resilience to include energetic trade-offs.

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Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea

Published 7 April 2026 Science Closed
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The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.

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pCO2-induced seawater acidification influencing cadmium toxicity on antioxidant defenses responses in juvenile Manila clam Ruditapes philippinarum

Published 30 March 2026 Science Closed
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Highlights

  • GSH system and SOD-CAT act as complementary lines of antioxidant defense
  • SA alters Cd effects on antioxidants depending on metal concentration
  • High SA overrides Cd effects on antioxidant defenses in Manila clams
  • Combined high SA and Cd exposure overwhelms antioxidant capacity
  • Candidate biomarkers for monitoring SA or Cd stress are proposed

Abstract

Ocean acidification is known to interact with heavy metals, impacting physiological processes of marine organisms. This study investigated antioxidant defenses of juvenile Manila clam Ruditapes philippinarum exposed to cadmium (Cd) across ambient-relevant to high concentrations, under pCO2-induced seawater acidification (SA) scenarios corresponding to IPCC ocean pH projections. Results revealed that clam’s antioxidant system, encompassing GSH defense system and SOD-CAT defense lines, collectively combated oxidative stress dependent on specific stressors and their stress levels. GSH system is vital for detoxification and maintaining redox balance, while SOD and CAT are essential for scavenging ROS. Cd exposure notably activated GSH redox cycle, and SA markedly inhibited the antioxidants associated with this cycle. SOD and CAT exhibited distinct regulatory pathways with asynchronous responses to SA and Cd co-exposure. SA conditions modulate Cd-induced antioxidant response dependent on metal concentrations. Antioxidant biomarkers responded more prominently to SA and Cd interactions than to individual exposure, particularly, high SA effects could override Cd effects on antioxidant responses. Although SA effects did not directly induce lipid peroxidation, elevated MDA levels under Cd exposure occurred only under SA conditions, indicating insufficient antioxidant defense against lipid peroxidation under excess co-exposure. GSH and SOD were more sensitive to SA exposure, whereas MDA and GST were sensitive to Cd exposure, suggesting their potential as biomarkers for assessing SA or Cd-induced oxidative stress, respectively. These findings provide insights into interplay between metal toxicity and ocean acidification on antioxidant defenses in bivalves, shedding light on their strategies to combat metal pollution amidst global ocean change.

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Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions

Published 30 March 2026 Science Closed
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Background

Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.

New information

This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.

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Resilient adults but vulnerable larvae: demographic pathways of chiton decline under ocean acidification

Published 26 March 2026 Science Closed
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Highlights

  • Natural CO₂ seep systems showed reduced intertidal chiton abundance.
  • Adult chitons showed resilience to acidification in field and lab experiments.
  • Larval survival and recruitment were strongly impaired under acidified seawater.
  • Population declines are linked to early life-stage vulnerability.
  • Loss of chitons may reduce grazing and bulldozing, reshaping intertidal communities.

Abstract

Ocean acidification (OA) is a major threat to marine calcifiers; however, the sensitivity across taxa and life stages remains elusive. In this study, we combined field surveys of natural CO₂ seeps with laboratory exposure, transplantation, and larval settlement experiments to assess the effect of OA on chitons, a group of calcifying grazers and bulldozers that play critical roles in the structure of rocky intertidal ecosystems. Field surveys revealed approximately 98.6% reduction in chiton (Acanthopleura loochooana, Liolophura japonica, and Acanthochitona rubrolineata) abundance at acidified habitats (pH 7.6), despite greater microalgal food availability and no detectable increase in predator abundance. Laboratory CO₂-exposure experiments showed no direct effect of OA on adult A. loochooana survival, which is consistent with the presence of protective structural features in the valves that confer resistance to dissolution. Transplant experiments revealed no evidence of increased adult A. loochooana mortality in the acidified habitats (pH 7.6). In contrast, larvae showed pronounced sensitivity to OA, with acidified seawater (pH 7.6) reducing larval settlement by approximately 81.5% compared to control conditions (pH 8.1); early life stages were the most vulnerable. These findings suggest that OA-associated decline in chiton abundance is mainly mediated by impaired recruitment rather than by direct adult mortality, predation, or food limitation. Given the role of chitons as grazers and bulldozers, their loss could substantially change intertidal community dynamics by decreasing grazing pressure and disturbing algal and microbial assemblages. Our findings underscore the criticality of considering life-stage vulnerability and ecological function when evaluating the ecosystem-level consequences of OA.

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Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates

Published 24 March 2026 Science Closed
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Background

Over the past 50 years, the oceans have absorbed over 90% of global warming heat, leading to warming, acidification and declining oxygen levels that are disrupting marine ecosystems and altering species distributions and productivity. The vulnerability of marine organisms to these changes depends on their biological traits, habitat conditions and adaptive capacity, influencing their growth, behaviour and overall population health. Micro-computed tomography (micro-CT) has been previously used for studying the morphological traits of marine invertebrates, which provide important insights into species functionality and responses to climate change and ocean acidification. Micro-CT enables non-destructive, high-resolution 3D analysis of internal and external structures, allowing precise measurement of traits such as density, porosity and morphology that are valuable for climate change research.

New information

The present manuscript describes micro-CT imaging datasets generated to investigate the effects of climate change on the morphological structure of two benthic marine invertebrates: the low-motility gastropod Hexaplex trunculus (Linnaeus, 1758) and the sessile sponge Chondrilla nucula Schmidt, 1862. Both species are considered particularly vulnerable to environmental stressors. To date, no study has investigated the effects of ocean warming and acidification on sponges using micro-CT technology. Using a common garden experimental design, individuals from geographically distinct populations exposed to different natural environmental regimes were subjected to combined warming and acidification scenarios to assess their morphological responses and adaptive capacity.

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Ocean acidification disrupts the biomineralization process in the oyster Crassostrea virginica via intracellular calcium signaling dysregulation

Published 20 March 2026 Science Closed
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Calcium is a key component in the shell and skeleton structure, serving as a second messenger for regulating biomineralization across many species. Ocean acidification (OA) is well-studied for causing shell dissolution in marine bivalve species by disordering calcium deposition. However, the regulatory pathway of calcification affected by OA remains unclear. This study assessed eastern oyster (Crassostrea virginica) to determine how calcium signaling responds to elevated pCO2 and influences shell formation. Under elevated pCO2, increased calcium influx was found in mantle epithelial cells, followed by the upregulation of calmodulin, a primary sensor of intracellular calcium. Expression levels of shell matrix proteins (SMPs), representing shell construction conditions, were significantly upregulated in the CO2-induced mantle cells. Larval C. virginica exhibited developmental stage-dependent alterations in calcium signaling and SMPs disarrangement stimulated by pCO2. Pharmaceutical blockage of the calcium binding on calmodulin induced abnormal expression of downstream genes and shell matrix changes consistent with those caused by elevated pCO2. Restored SMPs expressions in CO2-treated mantle cells were achieved by rescuing the level of calcineurin, a downstream effector of calmodulin. These findings suggest that shell deformities under OA are primarily caused by the disruption of the calcium-calmodulin signaling pathway in mantle epithelial cells.

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Influence of ocean warming and acidification on juveniles of the true giant clam, Tridacna gigas, and its microalgal symbionts

Published 19 March 2026 Science Closed
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Uncontrolled carbon dioxide emissions from human activities contribute to ocean warming and acidification. These alterations in ocean chemistry threaten marine organisms, such as the true giant clam, Tridacna gigas, which is already imperiled due to overharvesting and habitat destruction. To gain an understanding of the physiological and molecular responses of T. gigas and its symbiotic dinoflagellates to ocean warming and acidification, we subjected juvenile individuals to different treatments simulating predicted seawater pH (7.6 and 8.0) and temperature (28°C, 30°C, 32°C and 34°C) levels for the next century. Juvenile giant clams were able to tolerate sustained exposure to temperatures of up to 32°C and pH as low as 7.6, while exposure to higher temperature (34°C), regardless of pH level, resulted in total mortality after a week. However, symbiosis was compromised even in the sublethal treatments, as indicated by the decrease in Symbiodiniaceae density and changes in symbiont gene expression. Symbionts significantly upregulated genes involved in splicing, translation, fatty acid metabolism, and DNA repair, which may constitute an adaptive response, while downregulating genes involved in photosynthesis and transmembrane transport, suggests impaired transfer of photosynthates to the host. These findings demonstrate the vulnerability of the juvenile T. gigas holobiont to heat stress, highlighting the critical importance of continued conservation and management alongside efforts to mitigate global changes in ocean conditions to safeguard this iconic marine bivalve.

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UConn helps sea scallop communities adapt to ocean warming

Published 19 March 2026 Web sites and blogs Closed
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Scallops on deck

UConn Marine Sciences Associate Professor Samantha Siedlecki co-leads a project to incorporate data on historic and projected ocean conditions to predict the growth of scallops across vast geographic regions and more than a century of time. The project uses a novel tool developed by UConn Ph.D. candidate Halle Berger. Photo by NOAA.

In the coastal waters stretching from Maine to Virginia, Atlantic sea scallops rival lobster as the top shellfish caught in the wild. This delectable mollusk supports one of the most valuable fisheries in the U.S., generating $360 million in revenue annually, and making the U.S. a global leader in wild scallop fishing.

A combination of conservation measures has helped the industry weather the effects of overfishing. Now, warming and acidifying oceans are posing new threats and prompting new solutions.

A team of researchers co-led by UConn Associate Professor of Marine Sciences Samantha Siedlecki, Shannon Meseck, of NOAA’s Northeast Fisheries Science Center, and Robert “Bobby” Murphy, a social scientist with NOAA’s Northeast Fisheries Science Center, is exploring how environmental data can be used to develop a new management approach adapted for and responsive to a changing ocean. With the support of a three-year grant of just over $1 million from NOAA’s Ocean Acidification Program (OAP), the project will integrate oceanographic modeling, industry engagement, and socioeconomic research to create actionable strategies for industry and management. The project is one of six announced by OAP in November aimed at helping U.S. coastal communities adapt to ocean acidification.

“This is one of the earliest attempts to forecast optimal regions for Atlantic sea scallop growth, based on both carbon content and ocean temperature,” says Siedlecki.

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Differential impacts of ocean acidification and alkalinization on shell microstructure and molecular responses in Mytilus edulis

Published 18 March 2026 Science Closed
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Anthropogenic CO2 emissions are intensifying ocean acidification (OA), disrupting carbonate chemistry and threatening marine calcifiers such as mussels. Ocean alkalinity enhancement (OAE) has been proposed as a marine carbon dioxide removal (mCDR) strategy that can also mitigate OA, but its ecological safety for aquaculture species remains poorly understood. Here, we examined the short-term (21 days) responses of the blue mussel Mytilus edulis to OA (pH 7.3) and NaOH-based OAE (pH 9.0) using integrated shell microstructure analysis and transcriptomics. The results showed that while survival rates were unaffected, OA caused marked shell degradation and activated stress-related molecular pathways, whereas OAE enhanced shell integrity and stimulated growth-associated processes. Across treatments, a core set of biomineralization-related genes (e.g., VWA7, CA14, ALPL) exhibited expression shifts, suggesting central roles in carbonate homeostasis. In contrast, differential regulations of genes such as CA10 and VWDE revealed pH-specific responses. Notably, OAE induced minimal disruption of biomineralization and alleviated OA-related damage, highlighting its potential to support mussel aquaculture under future ocean conditions. While model simulations and plankton-scale experiments suggest global benefits of OAE, this study provides direct organism-level experimental evidence linking shell ultrastructure and transcriptomic responses under OA and OAE conditions. These findings offer mechanistic insights into mussel resilience and provide a critical empirical basis for evaluating the ecological safety of OAE as both a carbon sequestration strategy and a tool for sustainable aquaculture.

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Novel in situ CO2 enrichment system reveals seagrass meadows are a refugium against coastal acidification for North Atlantic bivalves

Published 18 March 2026 Science Closed
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While the accumulation of anthropogenic CO2 in the atmosphere is causing a decline in global ocean pH, many eutrophic estuaries are already experiencing acidification due to accelerated respiration driving the consumption of dissolved oxygen (DO) and production of CO2, decreasing available carbonate ions (CO32-) and threatening marine calcifiers. Here, a novel in situCO2 enrichment system was constructed to examine the effects of coastal acidification on the growth and survival of two species of North Atlantic bivalves (Argopecten irradians and Crassostrea virginica) in two distinct estuarine habitats: a seagrass meadow and an unvegetated sandy bottom in an open water estuary. The in-situ system captured natural diel dynamics as ambient chambers displayed chemistry nearly identical to the surrounding water, while CO2-enriched, acidified chambers maintained a consistent ~Δ 0.3–0.5 pH offset. At the unvegetated sandy bottom site, A. irradians and C. virginica displayed significant reductions in growth and survival in the acidified chambers (pHT = 7.3–7.5; saturation state of aragonite, ΩAr = 0.6–0.9) relative to ambient conditions (pHT = 7.6–7.9; ΩAr = 1.6–2). At the seagrass site, while growth of A. irradians and C. virginica in the acidified treatments (pHT = 7.3–7.7; ΩAr = 0.7) receiving the same delivery of CO2 was, again, significantly slowed compared to the control (pHT = 7.5–8.1; ΩAr = 2 – 2.8), the growth reduction, mortality rates, and levels of acidification were attenuated compared to the sandy bottom experiment, evidencing the ability of seagrass to buffer seawater and serve as a potential acidification refuge for bivalves. Collectively, the novel experimental CO2 enrichment system constructed for this project demonstrates that coastal acidification can have deleterious effects on marine bivalve populations, and that future conditions as well as the habitat refuge offered by seagrasses must be considered when developing management and restoration plans for temperate estuaries. 

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Effects of long-term exposure to ocean acidification on the Patagonian scallop Zygochlamys patagonica (P.P. king, 1832), a strategic fishery resource in the Southwest Atlantic ocean

Published 12 March 2026 Science Closed
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Highlights

  • Scallops were resilient to low pH within the present range of natural variability.
  • Negative impacts were observed under true ocean acidification scenario, including:
    • Increased mortality & decreased shell mass condition index
    • Dissolution of the external shell surface modifying shell ornamentation
    • Shell disarticulation leading to the lost ability to swim
  • During depuration time were observed:
    • A recovery of the scallops’ vital functions when the stressor (low pH) was not present
    • No recovery for shell mass condition index, shell ornamentations and disarticulated scallops
    • No new disarticulated scallops

Abstract

Ocean acidification (OA) is a global process leading to a decrease in seawater pH. It is a direct consequence of the increase in CO2 emissions due to human activities with documented impacts on marine species and ecosystems. Effects of a long-term OA exposure (6 months) followed by a 2 months depuration period were evaluated on the Patagonian scallop Zygochlamys patagonica, an important seafood species of the Southwest Atlantic Ocean. Scallops were exposed to three target pHs, (1) pH 7.93, the mean annual pHT at the sampling site, (2) pH 7.83, the minimum value of the natural variability recorded at the sampling site and, (3) pH 7.53, a 0.3 pH unit below the minimum pH. Mortality, shell growth, and shell mass, adductor muscle mass and gonadal mass condition indices were measured at the beginning of the experiment and after 3, 6 and 8 months of exposure. Decreased pH led to a significant increase in mortality and decrease in the shell mass condition index. Shell growth was minimal over the course of the experiment with no effect of pH. The external shell surface showed a gradual dissolution and discolouration over the 6 months exposure to low pH. Shell disarticulation due to ligament damage was also observed in 29% of the animals exposed to low pH after 6 months resulting in loss of swimming ability of scallops, whereas no disarticulated animals were recorded in the high pH treatment. These results show the vulnerability of this species to future OA conditions with implications for the ecosystem services it provides, such as a decline in scallop numbers, greater vulnerability to predation and lower quality of commercial products.

Continue reading ‘Effects of long-term exposure to ocean acidification on the Patagonian scallop Zygochlamys patagonica (P.P. king, 1832), a strategic fishery resource in the Southwest Atlantic ocean’

Interactive effects of ocean acidification and settlement biofilm on the early development of the European abalone Haliotis tuberculata

Published 3 March 2026 Science Closed
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Highlights

  • Interactive effects of OA and settlement biofilm were investigated on juvenile abalone.
  • Post-larval density and total length decreased significantly under lower pH.
  • Biofilm composition induced indirect effects through changes in diatom biomass.
  • (pH × Ulvella) interaction affected abalone shell resistance and colouration.

Abstract

Ocean acidification (OA) and associated shifts in carbonate chemistry represent major threats to marine organisms, particularly calcifiers. OA effects can be influenced by other environmental variables, including the biotic environment. This study investigated the effects of OA and algal density, acting through an Ulvella-conditioned settlement biofilm, on post-larval and juvenile abalone (Haliotis tuberculata). In a three-month full factorial experiment, abalone were exposed from metamorphosis onward to two pH conditions (ambient 8.0 and reduced 7.7) and two initial densities of the green alga Ulvella lens on settlement plates. Biofilm biomass and composition were characterised using spectral reflectance and HPLC pigment analysis. Biological (density, length), physiological (respiration rate), behavioural (hiding response) and shell parameters (colour, surface corrosion, strength) of abalone were measured. Biofilm biomass and composition assessed with pigment proxies remained relatively stable under both pH conditions, though greater variability in algal biomass occurred at low initial Ulvella density. Post-larval density and total length decreased significantly under low pH, while high Ulvella density reduced juvenile length at 80 days, likely due to competition between algal groups. A pH × Ulvella interaction affected shell fracture resistance and colouration, but not metabolism or behaviour, indicating that juvenile abalone maintained vital functions. Overall, the results confirm the sensitivity of early H. tuberculata stages to moderate OA (−0.3 pH unit) and highlight indirect macroalgal effects through changes in diatom cover. In natural environment, the capacity of abalone to cope with future OA will depend on complex trade-offs between direct acidification effects and food-related biotic interactions.

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Physiology and survival of intertidal calcifiers in two contrasting upwelling systems

Published 27 February 2026 Science Closed
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Climate change alters the oceans’ temperature, pH, and oxygen concentration. These changes are expected to increase globally over the coming decades, affecting a wide range of marine organisms. Coastal upwelling zones, characterized by their high environmental variability, serve as ideal natural laboratories to study the potential impacts on marine organisms and ecosystems of temperature change, acidification, and ocean deoxygenation. The estimation of survival using capture‐mark‐recapture (CMR) data has been commonly applied to vertebrates, and to date, very few studies have been done on marine invertebrate organisms. In this study, we combined field CMR data and laboratory measurements to assess the physiological responses (metabolic rate and heart rate) and survival probability of individuals in two populations of intertidal mollusks, Chiton granosus and Scurria zebrina, in contrasting upwelling environments (i.e., semi‐permanent vs. seasonal). We found that (1) there are no differences between the two studied populations for heart rate in both species, (2) the S. zebrina population subjected to seasonal upwelling has a higher metabolism, (3) there are no differences in the calcification rate between the two studied populations of both species, and (4) survival is significantly higher in the semi‐permanent upwelling location for both species. Our findings highlight species‐specific responses to contrasting upwelling regimes, suggesting that phenotypic plasticity and survival differences may influence resilience under ongoing climate change.

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A standardised experimental setup for simulating ocean warming and acidification in benthic marine invertebrates

Published 26 February 2026 Science Closed
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Recent studies identify ocean warming and acidification as major drivers of ecological change in the Eastern Mediterranean, posing serious threats to marine biodiversity, particularly for sessile or low-mobility organisms that cannot escape unfavourable conditions. At the same time, the need for standardised experimental approaches capable of generating high-quality data on organismal responses to multiple climate stressors has become increasingly evident. This manuscript presents a fully detailed and replicable experimental framework for simulating ocean warming and acidification in benthic marine invertebrates under controlled laboratory conditions. Detailed protocols include the technical set-up, experimental design, selection of climate scenarios, monitoring procedures and criteria for species selection and demonstrating its application through a validation case study from the MACCIMO project.

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Population-level transcriptomic datasets from two benthic invertebrates exposed to long-term experimental warming and acidification

Published 18 February 2026 Science Closed
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Ocean warming and acidification are major drivers of change in marine ecosystems, with particularly strong impacts on low-mobility benthic organisms. Despite their ecological importance, genomic and transcriptomic resources for sponges (Phylum: Porifera) and marine gastropods (Phylum Mollusca) that capture responses to long-term, combined climate stressors and population-level variability remain limited. Herein, we present population-level RNA-seq datasets from the sponge Chondrilla nucula and the gastropod Hexaplex trunculus, collected from northern and southern Aegean Sea (Eastern Mediterranean) populations and exposed for three months to elevated temperature and reduced pH in a common garden experiment simulating near-future climate change conditions. The datasets comprise high-quality paired-end Illumina reads, a complete de novo transcriptome assembly for C. nucula, and genome-guided alignments for H. trunculus. These datasets provide a valuable resource for investigating transcriptional plasticity and climate change resilience in benthic marine invertebrates.

Continue reading ‘Population-level transcriptomic datasets from two benthic invertebrates exposed to long-term experimental warming and acidification’

Seaweeds (Ulva, Gracilaria) significantly increase the growth rates of North Atlantic oysters, scallops, and clams grown in an aquaculture setting

Published 17 February 2026 Science Closed
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Highlights

  • Seaweeds significantly increased the growth rates of oysters by 20–70%, of clams by 60–70%, and of scallops by 130–140%.
  • Seaweeds caused significant increases in pH, DO, and the saturation state of calcium carbonate (Ω).
  • Seaweeds caused a significant increase in the concentrations of suspended chlorophyll a.
  • Co-culture of seaweeds with bivalves accelerates the growth rate of bivalves by increasing pH, DO, Ω, and food availability.

Abstract

While bivalve populations are threatened by climate change stressors including ocean acidification and hypoxia, the photosynthetic activity of seaweeds can raise the pH and dissolved oxygen (DO) of seawater, combatting these stressors. Here, three commercially important North Atlantic bivalves (Eastern oysters, Crassostrea virginica; hard clams, Mercenaria mercenaria; bay scallops, Argopecten irradians) were grown in the presence and absence of two common seaweeds (Ulva sp. and Gracilaria sp.) in replicated 300 L outdoor aquaculture tables with flow-through seawater. Environmental conditions including pH, DO, and chlorophyll a were continuously monitored and levels of dissolved inorganic carbon and the complete carbonate chemistry of seawater were quantified. The presence of seaweeds significantly increased shell- and tissue-based growth rates of oysters by 20–70%, of clams by 60–70%, and of scallops by 130–140% (p < 0.05) with both seaweeds being similarly effective. Both seaweed species caused significant increases in pH, DO, and the saturation state of calcium carbonate (Ω) during the day (p < 0.05) whereas differences at night were muted with night-time Ωaragonite levels being at or below saturation in all treatments. In some experiments, the presence of seaweeds caused a significant increase in the concentrations of suspended chlorophyll a, suggesting that seaweeds increased the total amount and diversity of food available to bivalves. Collectively, this study demonstrates that the co-culture of seaweeds with bivalves in a land-based aquaculture setting can significantly accelerate the growth rate of bivalves by increasing pH, DO, Ω, and food availability.

Continue reading ‘Seaweeds (Ulva, Gracilaria) significantly increase the growth rates of North Atlantic oysters, scallops, and clams grown in an aquaculture setting’

Metabolic rate measurements of two benthic invertebrates under simulated climate change conditions

Published 16 February 2026 Science Closed
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Climate change is profoundly altering marine ecosystems through ocean warming and acidification. These stressors are especially pronounced in the Mediterranean Sea, a climate change hotspot projected to warm faster than the global average. Increased temperatures and reduced pH directly affect metabolic processes in marine invertebrates by elevating respiration rates up to species-specific thermal limits, beyond which physiological performance declines. Ocean acidification further disrupts metabolic processes by increasing energetic maintenance costs. Sessile and sedentary marine invertebrates, such as sponges and benthic gastropods, are particularly exposed to such environmental shifts due to their limited ability to escape unfavorable conditions, making physiological plasticity and local adaptation crucial for persistence.

This manuscript presents a dataset of oxygen consumption rates and wet weight measurements for two low-mobility marine species, the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Using a common garden experiment, individuals from North and South Aegean populations were exposed for three months to simulated climate change conditions combining increased temperature and reduced pH. The dataset documents respiration measurements obtained using metabolic chambers after three months of exposure, allowing comparisons across species, geographic origin, and experimental treatments.The dataset accounts for intraspecific variation in these responses, providing insight into potential adaptive differences among geographically distinct populations. These data provide a resource for future analyses of metabolic responses of marine invertebrates to combined warming and acidification conditions.

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Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates

Published 6 February 2026 Science Closed
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Over the past 50 years, the oceans have absorbed over 90% of global warming heat, leading to warming, acidification, and declining oxygen levels that are disrupting marine ecosystems and altering species distributions and productivity. The vulnerability of marine organisms to these changes depends on their biological traits, habitat conditions, and adaptive capacity, influencing their growth, behavior, and overall population health. Micro-computed tomography (micro-CT) has been previously used for studying the morphological traits of marine invertebrates, which provide important insights into species functionality and responses to climate change and ocean acidification. Micro-CT enables non-destructive, high-resolution 3D analysis of internal and external structures, allowing precise measurement of traits such as density, porosity, and morphology that are valuable for climate change research.

The present manuscript describes micro-CT imaging datasets generated to investigate the effects of climate change on the morphological structure of two low-motility benthic marine invertebrates: the gastropod Hexaplex trunculus and the sponge Chondrilla nucula. Both species are considered particularly vulnerable to environmental stressors. To date, no study has investigated the effects of ocean warming and acidification on sponges using micro-CT technology. Using a common garden experimental design, individuals from geographically distinct populations exposed to different natural environmental regimes were subjected to combined warming and acidification scenarios to assess their morphological responses and adaptive capacity.

Continue reading ‘Experimental exposure to climate change scenarios imposed alterations on the morphological traits of sessile and low-motility marine invertebrates’

Parental exposure to ocean acidification impacts the larval development and transcriptome of the Pacific oyster Crassostrea gigas

Published 2 February 2026 Science Closed
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Atmospheric carbon dioxide (CO2) levels are escalating at an unprecedented rate, leading to the phenomenon of ocean acidification (OA). Parental exposure to acidification has the potential to enhance offspring resilience through cross-generation plasticity. In this study, we analyzed larval growth and transcriptomic profiles in the Pacific oyster, Crassostrea gigas, a species of significant ecological relevance, under both control and elevated CO2 conditions experienced by their parental generation. Our findings indicate that the oyster populations exposed to OA exhibited a higher incidence of abnormalities during the D-shaped larval stage, followed by accelerated growth at the eyed stage. Through a comparative transcriptomic investigation of eyed larvae (25 d after fertilization), we observed that parental exposure to OA substantially influenced the gene expression in the offspring. Genes associated with lipid catabolism and shell formation were notably upregulated in oysters with parental OA exposure, potentially playing a role in cross-generational conditioning and conferring resilience to OA stressors. These results underscore the profound impact of OA on oyster larval development via cross-generational mechanisms and shed light on the molecular underpinnings of cross-generation plasticity.

Continue reading ‘Parental exposure to ocean acidification impacts the larval development and transcriptome of the Pacific oyster Crassostrea gigas’

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