Ocean acidification (OA) driven by increasing atmospheric CO2 is altering marine biodiversity. However, impacts of OA on ecosystem functioning at the community level, including calcification, primary production and nutrient uptake, remain largely unknown. Here, we conducted community transplant experiments at natural CO2 vents to assess how declining pH affects marine community species composition, biomass, and key ecosystem processes over time. Our results indicate that community shifts caused by declining pH lead to decreased biomass and calcification rates, while photosynthesis and nutrient uptake rates increased. By leveraging OA field model systems and in situ measurements of ecosystem functioning, this study provides critical insights into how OA-induced biodiversity loss reshapes the structure and functioning of temperate marine coastal ecosystems.
Continue reading ‘Unravelling marine benthic functioning shifts under ocean acidification’Posts Tagged 'vents'
Unravelling marine benthic functioning shifts under ocean acidification
Published 10 April 2026 Science Leave a CommentTags: algae, biological response, BRcommunity, calcification, community composition, crustaceans, field, Mediterranean, mollusks, morphology, otherprocess, photosynthesis, physiology, porifera, respiration, vents
Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea
Published 7 April 2026 Science Leave a CommentTags: adaptation, biological response, field, Mediterranean, molecular biology, mollusks, morphology, otherprocess, physiology, respiration, vents
The continuous increase in anthropogenic carbon dioxide (CO2) emissions into the atmosphere is one of the main factors contributing to ocean acidification (OA). In fact, CO2 is partially absorbed by the oceans, where it alters carbonate chemistry and seawater pH, which is expected to decrease from the current level of 8.1 to 7.7 by 2100. OA exerts harmful impacts primarily on calcifying organisms, as it affects the availability of carbonates, which makes their calcareous structures thinner and more fragile. Moreover, several studies have described the detrimental effects of OA across many marine taxa, affecting important physiological and metabolic mechanisms. On the other hand, research conducted at CO2 vent systems, which are volcanic naturally acidified sites, showed that several organisms can survive under acidified conditions through specific tolerance and/or adaptive strategies. Among these organisms, the gastropod Patella spp. is one of the few calcifiers capable of inhabiting naturally acidified sites, such as the Castello Aragonese vent systems at Ischia Island and the San Giorgio vent systems at Sicily Island. Nonetheless, the complex mechanisms that allow survival and potential adaptation of these organisms to natural OA conditions need to be understood. Therefore, this PhD study aimed at investigating the potential molecular, physiological, metabolic, genetic, and epigenetic mechanisms that enable these organisms to tolerate and survive under OA conditions through a stepwise approach. Specifically, this PhD research attempted to answer the following questions: • Does OA entail a stressful condition in resident populations of Patella spp. living at reduced pH conditions, thereby affecting their overall well-being and health status? • Are there specific physiological, metabolic, and biochemical mechanisms that contribute in defining tolerance to OA? • Are limpets genetically adapted to OA? • Is DNA methylation contributing to promote tolerance to OA in limpets? • What is the role of environmental conditions in shaping the response to OA? The first chapter of this thesis considered three Patella species (P. caerulea, P. rustica, and P. ulyssiponensis) collected from the CO2 vent systems of the Castello Aragonese (Ischia Island). This vent system exhibits a natural acidification gradient ranging from ambient pH (N1: pH = 8.1), to intermediate pH (N2: pH = 7.7), and to extremely low pH (N3: pH < 7.4). Resident populations were collected along the gradient and at San Pietro, an additional ambient pH site (pH = 8.1), located at a distance of 4 km from the Castello vent. In addition, a 30-day in situ transplant experiment was conducted using P. caerulea, in order to evaluate the short-term responses induced by OA. Morphometric traits, such as shell length, height, width, and soft-tissue weight, were measured, and a set of biomarkers related to antioxidant system, energy metabolism, neurotoxicity, and biomineralization was applied. For resident populations, P. caerulea showed increased size and energy reserves at the extremely acidified site, likely related to a shift from erect calcified algae to biofilm, or to reduced competition and/or predatory pressure under acidified conditions. Biochemical endpoints measured in both P. caerulea and P. ulyssiponensis were not modified by OA. Conversely, P. rustica exhibited significant modulation of nearly all biochemical parameters, likely due to its different position on the rocky shore, which makes this species more exposed to tidal fluctuations and therefore to an additional source of disturbance, besides OA. Short-term exposure of P. caerulea to OA resulted in a decrease in protein content and an increase in glycogen content at the extremely acidified site, with the induction of superoxide dismutase and glutathione-S-transferase activities at intermediate pH, suggesting the activation of compensatory mechanisms to cope with reduced pH conditions. Overall, results revealed a distinct response to OA of the three species of Patella. Moreover, the increased size and energy-related endpoints observed in P. caerulea and P. rustica highlighted the need to further investigate energy metabolism aspects, in order to better understand the trade-offs between compensatory mechanisms and the energetic cost underlying tolerance to OA. Based on these evidences, the second chapter focused exclusively on P. caerulea, with the aim of deeply investigating metabolic and physiological stress-responses, comparing resident populations of the Castello Aragonese vent systems and transplanted organisms, similarly to the first chapter. Respiration and ammonia excretion rates were measured four times across the year. Additionally, untargeted metabolomics analyses were performed to investigate metabolic pathways potentially involved in response to OA. Only during summer, OA increased respiration rate in limpets from the most acidified site, while simultaneously reduced excretion rates, likely to allocate more energy resources to face the increasing temperature, besides OA. Furthermore, both resident and transplanted populations up-regulated carnitine metabolism, suggesting that OA induced an increase of energy production through β-oxidation and subsequent Krebs cycles. Moreover, several metabolites involved in osmoregulation, oxidative stress, and nucleic acid mechanisms were increased. Overall, results seem to confirm the presence of negative effects and of an energetic cost underpinning tolerance to OA. The third and final chapter investigated the potential influence of phenotypic plasticity, genetic adaptation, and DNA methylation in tolerance to OA in adult and juvenile populations of P. caerulea collected from two CO2 vent systems of the Mediterranean Sea. Adult and juvenile specimens were sampled along the acidification gradient of the Castello Aragonese vent systems of Ischia Island (San Pietro/N1: pH = 8.1; N2: pH = 7.7; N3: pH < 7.4) and from the San Giorgio vent systems of Sicily Island (Patti: pH = 8.1; San Giorgio: pH = 7.8). Following genomic DNA extractions from foot tissue and individual libraries preparation with the NEB Next® Enzymatic Methyl-seq Kit, samples were sequenced on the Illumina NovaSeq 6000 sequencer. Data processing and analyses were conducted on Euler platform mainly using biscuit tool, which enabled to simultaneously extract genomic and epigenomic information from DNA methylation sequencing. Population genomics and epigenomics analyses revealed divergent patterns between the Ischia and Sicily populations. Populations from the Ischia vent revealed marked signs of genomic differentiation, particularly in adults from the intermediate and extremely low pH sites, while reduced differences in DNA methylation levels were detected, especially in adults. These findings suggest a strong signature of purifying selection acting on standing genetic variation, through a within-generation response, likely driven by the more pronounced pH fluctuations occurring at these sites. Conversely, no genomic differentiation was observed between the Sicily populations, but greater differences in DNA methylation were detected between acidified and non-acidified sites at both adult and juvenile stages. These results revealed that this epigenetic mechanism, rather than genomic changes, may play a key role in the response to the milder pH variations of this vent and potentially enhance organisms’ tolerance to OA. In conclusion, this PhD project investigated tolerance to OA in limpets through a holistic approach that, for the first time, integrated morphological, physiological, metabolic, biochemical, genetic, and epigenetic analyses. Overall, findings revealed that Patella spp. has the ability to survive under acidified conditions even though with a physiological and metabolic cost, which could be partially compensated by more favorable environmental conditions. This study further highlights the importance of conducting research in naturally acidified environments, since it allows to formulate more realistic hypotheses about the ability of marine organisms to persist in future changing oceans.
Continue reading ‘Investigation of the adaptive mechanisms to ocean acidification in Patella species from CO2 vent systems of the Mediterranean Sea’Resilient adults but vulnerable larvae: demographic pathways of chiton decline under ocean acidification
Published 26 March 2026 Science ClosedTags: abundance, algae, biological response, BRcommunity, chemistry, field, laboratory, mollusks, morphology, mortality, North Pacific, otherprocess, phytoplankton, reproduction, vents
Highlights
- Natural CO₂ seep systems showed reduced intertidal chiton abundance.
- Adult chitons showed resilience to acidification in field and lab experiments.
- Larval survival and recruitment were strongly impaired under acidified seawater.
- Population declines are linked to early life-stage vulnerability.
- Loss of chitons may reduce grazing and bulldozing, reshaping intertidal communities.
Abstract
Ocean acidification (OA) is a major threat to marine calcifiers; however, the sensitivity across taxa and life stages remains elusive. In this study, we combined field surveys of natural CO₂ seeps with laboratory exposure, transplantation, and larval settlement experiments to assess the effect of OA on chitons, a group of calcifying grazers and bulldozers that play critical roles in the structure of rocky intertidal ecosystems. Field surveys revealed approximately 98.6% reduction in chiton (Acanthopleura loochooana, Liolophura japonica, and Acanthochitona rubrolineata) abundance at acidified habitats (pH 7.6), despite greater microalgal food availability and no detectable increase in predator abundance. Laboratory CO₂-exposure experiments showed no direct effect of OA on adult A. loochooana survival, which is consistent with the presence of protective structural features in the valves that confer resistance to dissolution. Transplant experiments revealed no evidence of increased adult A. loochooana mortality in the acidified habitats (pH 7.6). In contrast, larvae showed pronounced sensitivity to OA, with acidified seawater (pH 7.6) reducing larval settlement by approximately 81.5% compared to control conditions (pH 8.1); early life stages were the most vulnerable. These findings suggest that OA-associated decline in chiton abundance is mainly mediated by impaired recruitment rather than by direct adult mortality, predation, or food limitation. Given the role of chitons as grazers and bulldozers, their loss could substantially change intertidal community dynamics by decreasing grazing pressure and disturbing algal and microbial assemblages. Our findings underscore the criticality of considering life-stage vulnerability and ecological function when evaluating the ecosystem-level consequences of OA.
Continue reading ‘Resilient adults but vulnerable larvae: demographic pathways of chiton decline under ocean acidification’Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents
Published 16 March 2026 Science ClosedTags: algae, biogeochemistry, biological response, field, Mediterranean, phanerogams, vents
Seagrass meadows are natural carbon sinks, yet the effect of ocean acidification on their carbon burial capacity remains poorly understood. Here we investigated natural carbon dioxide vents in Ischia, Italy to assess how seawater pH influences carbon burial in an area dominated by the seagrass Posidonia oceanica. Organic carbon burial rates (mean ± standard error) between 1954 – 2021 were low under ambient conditions (1.5 ± 0.5 g m-2 yr-1) but increased sharply under acidified conditions (7 ± 1 g m-2 yr-1), reaching sevenfold higher values under extreme acidification (10 ± 3 g m-2 yr-1). Stable isotopes suggest that these patterns reflect changes in the relative contribution of seagrass, macroalgae, and epiphytes to buried carbon. These findings reveal that ocean acidification can substantially alter coastal carbon cycling, potentially through shifts in community composition, with important implications for understanding past and future feedbacks between seagrass ecosystems and the marine carbon cycle.
Continue reading ‘Enhanced carbon burial in seagrass meadows under ocean acidification revealed by carbon dioxide vents’Marine heatwaves, ocean warming and acidification reshape reef fish gut microbiomes
Published 16 March 2026 Science ClosedTags: biological response, BRcommunity, community composition, field, fish, molecular biology, multiple factors, North Pacific, otherprocess, physiology, prokaryotes, temperature, vents
Extreme climatic events and gradual climate change are increasingly anticipated to interact and reshape ecological communities. However, the combined effects of ocean warming, acidification and marine heatwaves on host‐associated microbial communities and their potential role in host adaptation remain poorly understood. Here, we assessed shifts in gut microbiome communities and their associations with physiological performance in one tropical ( Abudefduf vaigiensis ) and one subtropical ( Microcanthus strigatus ) reef fish species, across three temperate reefs representing natural analogues of climate change: a present‐day baseline (‘cool reef’), a chronically warmed reef (‘warm reef’) and a reef experiencing combined warming and extreme acidification (‘extreme reef’). We also examined gut microbiome changes in A. vaigiensis before and during a severe marine heatwave. A. vaigiensis had lower gut microbiome evenness and diversity at the warm (43% and 44% decrease, respectively) and extreme (38% and 31% decrease) reefs compared to the cool reef, and its gut microbiome community shifted at the extreme reef with a 122% increase in abundance of opportunistic bacteria Vibrio. A. vaigiensis also had lower gut microbiome richness at the warm (42% decrease) and extreme (52% decrease) reefs during the heatwave compared to pre‐heatwave individuals. In contrast, M. strigatus showed higher microbiome evenness (99% increase) and diversity (98% increase) at the warm reef compared to the cool reef; however, these gains were lost at the extreme reef, with microbiome diversity and evenness returning to cool reef levels. Microbiome changes in both species were generally not associated with their physiological performance (protein content, oxidative stress, antioxidant capacity or body condition). Our findings suggest that marine heatwaves, ocean warming and acidification can reshape reef fish gut microbiomes, driving simplification in Abudefduf vaigiensis but distinct restructuring in Microcanthus strigatus . We conclude that climate‐driven microbiome reshuffling may alter host–microbiome relationships and functions in fishes in a future ocean.
Continue reading ‘Marine heatwaves, ocean warming and acidification reshape reef fish gut microbiomes’‘Irreversible loss’: how climate change is threatening Europe’s sunken civilisations
Published 11 March 2026 Press releases ClosedTags: Mediterranean, vents
Climate change is endangering the health of Europe’s oceans, and it’s not just marine life that is affected.
A new study warns that precious underwater cultural heritage is being threatened by ocean acidification.
The research found that materials that make up many archaeological treasures are at risk of deterioration when water pH levels drop.
The research, coordinated by the University of Padua in Italy, examined how ocean acidification, a direct consequence of climate change, can accelerate the decay of submerged archaeological sites.
The scientists studied how quickly historical materials deteriorate through dissolution and biological decay in marine environments, and then integrated these findings with large-scale climate models, lead researcher Luigi Germinario explains.
The results were concerning. While stone degradation was minimal in pre-industrial times and remains relatively limited today, rising emissions could trigger an exponential increase in deterioration rates.
These changes would be “irreversible over the coming decades and centuries, influenced by the materials’ properties and shifting dynamics of biocolonisation” – the growth of microorganisms on the surfaces of submerged structures – Germinario told Italian national newspaper La Repubblica.
The study, published in Communications Earth & Environment, warned that “ocean acidification will pose a severe challenge to protecting underwater cultural heritage, making conservation and adaptation policies more urgent than ever.”
Continue reading ‘‘Irreversible loss’: how climate change is threatening Europe’s sunken civilisations’Range-extending fish become competitive dominants under ocean warming but not heatwaves or acidification
Published 27 February 2026 Science ClosedTags: biological response, field, fish, multiple factors, North Pacific, performance, temperature, vents
Ocean warming is driving species range extensions into cooler regions. The direct physiological influence of warming on species performance can accelerate such extensions into novel ecosystems; however, indirect effects of invader–resident interactions in cooler regions may counter these positive effects. Here, we examined the foraging performance and densities of competing warm‐water and cool‐water fishes across a latitudinal temperature gradient spanning 1500 km from tropical to temperate reefs subjected to rapid ocean warming in the southern hemisphere, and across natural analogs of temperate, tropicalized, and acidified reef localities in the northern hemisphere, and during a severe marine heatwave at a temperate reef. While current levels of ocean warming have allowed the warm‐water fish to extend their ranges into temperate ecosystems at both hemispheres, their foraging performance was reduced at both the cold‐ and warm‐temperate reefs compared to the (sub)tropical reefs. However, at the (warmer) tropicalized reef, the warm‐water fish had higher foraging performance and maintained densities, even under extreme pH reduction, compared to the temperate reef. In contrast, the cool‐water species struggled at the warmer tropicalized and extreme reefs with reduced foraging performance and lower population densities compared to the temperate reef. Contrastingly, the severe heatwave experienced at the temperate reef did not alter the foraging behaviors of either species. We suggest that ocean warming boosts the foraging performance of the range‐extending warm‐water fish and impairs that of their cool‐water competitor at temperate reefs, irrespective of acidification and heatwaves, leading to a shift in dominance hierarchies on temperate reefs. We conclude that warming‐driven increases in foraging performance of the warm‐water species may alleviate foraging limitations and enhance its establishment at its leading range edges under climate change, to the detriment of its cool‐water competitors.
Continue reading ‘Range-extending fish become competitive dominants under ocean warming but not heatwaves or acidification’Natural analogues of climate change can reveal fish responses across multiple levels of biological organisation
Published 26 February 2026 Science ClosedTags: biological response, field, fish, review, vents
Anthropogenic climate change is threatening ecosystem functionality and biodiversity globally. While significant research has been dedicated to understanding how organisms may respond to future climate change, most of these studies focus on individual levels of biological organisation in controlled laboratory settings, which often fail to capture the complexity of natural ecosystems. Organisms respond to climate stressors across various levels of biological organisation, which also involve complex interactions or feedback mechanisms among levels, making it difficult to generalise responses to climate change from laboratory experiments or single levels alone. Natural analogues provide a unique opportunity to observe complex ecological interactions in real-world environments with long-term exposure to climate change stressors. Here, we provide a systematic literature review to reveal how natural analogues of ocean warming and ocean acidification can be used to assess fish responses to climate change across multiple levels of biological organisation (from molecular to biogeographical scales) and to assess how cross-level buffering and feedback mechanisms may shape fish species persistence in a future ocean. We identify key knowledge gaps and propose research frameworks that integrate natural analogues with laboratory experiments, mesocosms, and predictive models to better capture the complexity of fish responses to climate stressors in a more holistic way. Finally, we highlight the importance of coordinated, cross-system research using multiple natural analogues to reveal adaptive mechanisms and strengthen predictions of fish community reorganisation under climate change.
Continue reading ‘Natural analogues of climate change can reveal fish responses across multiple levels of biological organisation’Ocean acidification modifies site fidelity and patterns of seagrass habitat use by a herbivorous fish
Published 25 February 2026 Science ClosedTags: algae, biological response, BRcommunity, field, fish, Mediterranean, morphology, performance, physiology, vents
Ocean acidification (OA), characterized by changes in seawater chemistry and a concomitant decline of pH due to the uptake by seawater of the atmospheric CO2, will profoundly shape marine ecosystems. The lower pH/higher pCO2 can act negatively (as a stressor for organisms with a calcareous exoskeleton) or positively (as a direct resource for primary producers like macrophytes). Consequently, herbivores may indirectly benefit from OA counteracting the direct negative effects of living under high pCO2/low pH conditions. Here, we investigated how OA may influence site fidelity, habitat use, and trophic behaviour patterns of Sarpa salpa, the main herbivorous fish associated with Posidonia oceanica meadows in the north-western Mediterranean Sea. We assessed if and how OA influences the habitat use of S. salpa by comparing natural tags, in otoliths and muscle tissues, between CO2 vents and reference pH sites. We did not find differences in otolith elemental composition and shape among fish exposed to different pH conditions (CO2 vent vs ambient pH sites). However, otolith isotopic signatures differed between life stages (young vs sub-adults), consistent with the variations observed in seawater-dissolved inorganic carbon across sites. Finally, comparisons of the nutritional value marine vegetation (macroalgae, P. oceanica, epiphytes) showed that P. oceanica and epiphytes were more nutritious at CO2 vents, along with increased consumption by S. salpa. This trophic separation indicates that S. salpa spent more time exploiting the trophic resources in the CO2 vents. Together, our findings shed new light on plant–herbivore interactions within P. oceanica meadows under future OA scenarios.
Continue reading ‘Ocean acidification modifies site fidelity and patterns of seagrass habitat use by a herbivorous fish’Carbon concentration mechanisms in Canary Islands macroalgae and their implications for future benthic community structure under ocean acidification
Published 12 February 2026 Science ClosedTags: algae, biological response, BRcommunity, community composition, laboratory, North Atlantic, otherprocess, physiology, primary production, respiration, vents
In recent decades, due to the anthropogenic CO2 concentration increase in the atmosphere, the chemistry of seawater has been seriously altered, producing the phenomenon known as Ocean Acidification (OA). Of all the dissolved inorganic carbon (DIC) present in seawater, only 1% is in the form of CO2. However, if anthropogenic CO2 emissions to the atmosphere continue, it will no longer be a limiting resource. Part of the response of marine photosynthetic organisms to these changes depends on their carbon physiology. The presence and effectiveness of carbon concentration mechanisms (CCM) can define the production and growth of macroalgae under OA conditions. Although CCMs are not essential when the seawater concentration of inorganic carbon is high, species that do not use them can see their performance improved. Our goal was to determine the presence or absence of CCMs in a total of 19 species of common macroalgae in the Canary Islands through a pH drift experiment and to establish their primary production rates through incubations and measurements of the O2 variation. Samples of each species were incubated during 8, 24 and 32 h in isolated containers and under controlled lighting and temperature conditions. Of the 19 species studied, 11 presented CCM and 8 did not present CCM. Five of the eight species that did not show the presence of CCMs in the present study are present in the CO2 seeps of Fuencaliente and one of them, H. scoparia is a dominant species.
Continue reading ‘Carbon concentration mechanisms in Canary Islands macroalgae and their implications for future benthic community structure under ocean acidification’Assessing sponge resilience to ocean acidification in natural reef environments
Published 28 January 2026 Science ClosedTags: biological response, BRcommunity, community composition, field, otherprocess, photosynthesis, porifera, prokaryotes, respiration, South Pacific, vents
Highlights
- Sponges are key components of coral reefs globally providing a range of important functional roles.
- We used in situ incubation chambers to measure chlorophyll concentrations, oxygen fluxes and microbial communities for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea.
- We found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities
- Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Abstract
Sponges are key components of coral reefs globally providing a range of important functional roles. While sponges are under threat from the impacts of global climate change, there is an emerging picture of sponge tolerance to ocean acidification (OA). However, to date all physiological studies on sponge tolerance to OA have been under ex-situ experimental conditions and only for a limited number of sponge species. Instead, here we used in situ incubation chambers to measure chlorophyll concentrations and oxygen fluxes for two common Indo-Pacific sponge species (Melophlus sarasinorum and Neopetrosia chaliniformis) at a natural CO2 vent (pHT 7.6–7.7) and control site in Papua New Guinea. We also explored differences between the sponge microbial community composition between control and vent locations for N. chaliniformis. We found very low concentrations of chlorophyll in both species, compared to other sponges, suggesting these species are largely heterotrophic. We also found little evidence for any physiological differences between vent and control sponges, and no differences in the overall microbial communities, except some specific microbes. Overall, our results support the emerging evidence that heterotrophic sponges will likely be resilient to future ocean acidification.
Continue reading ‘Assessing sponge resilience to ocean acidification in natural reef environments’Climate change and ocean acidification pose a risk to underwater cultural heritage
Published 27 January 2026 Science ClosedTags: chemistry, field, laboratory, Mediterranean, socio-economy, vents
Ocean acidification caused by climate change drives a spectrum of ecological impacts on the marine environment, while also posing a lurking threat to the traces of human history lying on seabeds. We present a quantitative assessment of the climate change risk to underwater cultural heritage, focusing on the vulnerability of historical stone materials to shifting ocean pH levels. We monitored the amount and rate of stone surface material loss and textural alteration triggered by natural processes of mineral dissolution and biodeterioration in submarine settings, combining field and laboratory experimentations with climate models. Stone deterioration has been minimal in pre-industrial and present times; however, escalating anthropogenic emissions might lead to an exponential surge in vulnerability, with irreversible decay processes accelerating in the next decades and centuries, constrained by material properties and shifting biofouling dynamics. Ocean acidification will dramatically challenge the protection of underwater cultural heritage, demanding urgent preservation and adaptation policies.
Continue reading ‘Climate change and ocean acidification pose a risk to underwater cultural heritage’Core transcriptional plasticity pave the way for fish to succeed in a high-CO2 world
Published 26 January 2026 Science ClosedTags: biological response, BRcommunity, field, fish, molecular biology, performance, South Pacific, vents
Ocean acidification (OA) can alter the physiological and behavioural traits of marine fishes, raising concerns about how wild species will adapt to rising pCO2. Using natural volcanic CO2 vents at White Island, New Zealand, as analogues for future OA conditions, we quantified behaviours in situ and sequenced the brain transcriptomes of four highly site-attached fish species from two vents and a nearby control site with ambient pCO2, of which two species exhibit increased population densities at the vent. We found that two species showed changes in habitat preferences, and all four species with significant changes in gene expression related to circadian rhythm, visual perception, and energy metabolism at the vents. Strikingly, three differentially expressed genes, a heat shock protein (HS90A) and two immediate early genes (IEGs: JUN and FOS), were central regulators for transcriptional changes across all species at the vents. Within the circadian entrainment pathway, expression changes in opsins may act as a trigger, while core clock genes and IEGs function as downstream effectors, suggesting that elevated pCO2 may reset the circadian clock in these fishes. Notably, the two species with increased populations at the vents exhibited distinct transcriptional responses in genes involved in calcium signalling, reproduction, intracellular pH regulation and energy metabolism. Together with convergent evolution in a calcium signalling gene and an HS90 facilitator, these molecular features may confer their reproduction advantages and ability to cope with elevated pCO2. Our study provides novel insights into the molecular mechanisms underlying fish responses to OA and highlights key pathways that may support survival and ecological success under a naturally high-CO2 world.
Continue reading ‘Core transcriptional plasticity pave the way for fish to succeed in a high-CO2 world’Effects of long-term ocean acidification exposure on the structural, mineralogical, and mechanical properties of sea urchin (Echinometra spp.) skeletons at a natural volcanic CO2 seep
Published 23 December 2025 Science ClosedTags: biological response, echinoderms, field, morphology, North Pacific, vents
Two decades of mesocosm studies document generally negative effects of ocean acidification (OA) on adult sea urchin growth, feeding performance, skeletal structure, and strength. Whether experimental observations hold true in natural systems will determine whether they can be extrapolated to predict responses under ecologically relevant contexts. Here, we employ a suite of imaging, chemical, and mechanical techniques to examine the skeletal properties of two closely related sea urchin species (genus Echinometra) living at a natural carbon dioxide (CO2) seep in Japan. Test plates and spines from urchins living under elevated CO2 conditions were thinner, more porous, and had less biomineral than those at reference sites; however, tooth structure was resilient to elevated CO2. The magnesium content of the test and spines did not differ between sites; however, they exhibited reduced nanohardness and became more brittle under elevated CO2. Together, altered structural and mechanical properties may compromise the protective function of urchin skeletons at the CO2 seep. These responses have implications for ecosystem structure if urchin function is suppressed at the population level. Future work might explore the repeatability of these findings across successive species and localities to recognize generality, its limits, and the conditions that mediate the influence of OA.
Continue reading ‘Effects of long-term ocean acidification exposure on the structural, mineralogical, and mechanical properties of sea urchin (Echinometra spp.) skeletons at a natural volcanic CO2 seep’Syntheses on taxonomic and functional biodiversity related to ocean acidification in a well-studied CO2 vents system: the Castello Aragonese of Ischia (Italy)
Published 22 December 2025 Science ClosedTags: biological response, BRcommunity, community composition, field, Mediterranean, otherprocess, review, vents
Ocean acidification (OA) is considered a relevant additional threat to marine biodiversity and is linked to the increasing CO2 concentration in the atmosphere. Here, we provide a synthesis on the loss of both taxonomic and functional biodiversity, in the up to date best studied CO2 vents in the world, the Castello Aragonese of Ischia (Tyrrhenian Sea, Italy), analyzing a large data set available at this site and reporting qualitative taxonomic data along a gradient of OA from ambient normal conditions outside the vents (pH 8.1) to low pH conditions (pH 7.8–7.9) and extreme low pH conditions (pH < 7.4). A total of 618 taxa were recorded (micro- and macrophytes, benthic invertebrates, and fishes). A relevant loss of biodiversity (46% of the species) was documented from control/normal pH conditions to low pH, and up to 56% species loss from control of extreme low pH conditions. Functional groups analysis on the fauna (calcification, size, motility, feeding habit, and reproduction/development) allowed us to draw an identikit of the species which is able to better thrive under OA conditions. These are motile forms, small- or medium-sized, generalist feeders, at the low level of the food web (herbivores or detritivores), mainly brooders, or with indirect benthic development, and without calcification or weakly calcified.
Continue reading ‘Syntheses on taxonomic and functional biodiversity related to ocean acidification in a well-studied CO2 vents system: the Castello Aragonese of Ischia (Italy)’Morphological adjustments enable sea urchins to sustain calcified structure function under ocean acidification
Published 10 December 2025 Science ClosedTags: biological response, echinoderms, field, morphology, South Pacific, vents
Ocean acidification can reduce the size of calcified structures produced by marine calcifiers, raising questions about their competitiveness and persistence in future oceans. Yet, size reduction in calcified structures may represent a plastic response to ocean acidification if these structures remain functional. To test this hypothesis and examine whether morphological plasticity can influence the functionality of calcified structures, we assessed the effects of ocean acidification on the morphological, mechanical and chemical properties of the calcified structures of a sea urchin species prevailing at natural CO2 vents. We found that the rigid shells covering sea urchins’ bodies (‘tests’) were thinner and that they had smaller teeth and lower spine density at vents, but the mechanical performance of these calcified structures (mechanical resilience, wear resistance and bending strength) was maintained, possibly mediated by the capacity of sea urchins to sustain acid-base balance for calcification (i.e. increased Na/Ca). Our findings suggest that such morphological shifts in calcified structures may enable sea urchins to maintain structural performance under ocean acidification. Since ocean acidification is a slow process relative to the life cycle of sea urchins, some sea urchin species may acclimate, or even adapt, to ocean acidification so that their populations and ecological functions can persist in a future high-CO2 world.
Continue reading ‘Morphological adjustments enable sea urchins to sustain calcified structure function under ocean acidification’Posidonia bonsai: dwarf morphotypes of Posidonia oceanica in CO2 vents and non-vents areas suggest a novel growth strategy
Published 10 December 2025 Science ClosedTags: biological response, field, Mediterranean, morphology, phanerogams, vents
Highlights
- Dwarf Posidonia oceanica shoots occur in vents and no-vents areas at Ischia, Palinuro and Ustica.
- Dwarf shoots have a biomass reduced from 82 % to 97 % than normal-sized shoots.
- Bonsai shoots also lack cyclic annual sheath-thickness pattern (lepidochronology).
- Bonsai shoots occur in dead matte areas of the meadows, or behind regular terminal shoots.
- Bonsai shoots suggest a novel growth strategy, likely to favour rapid substrate colonization.
Abstract
Dwarf shoots of the Mediterranean seagrass Posidonia oceanica, referred to as “Posidonia bonsai”, described in shallow hydrothermal vents, showed markedly reduced size and altered phenology, that were attributed to the extreme environmental conditions associated with ocean acidification and H2S emissions of these vent systems. Here we report new records of Posidonia “bonsai” from CO2 vent off the Ischia Island and non-vent areas with normal pH conditions at Ischia, and Ustica islands and at Palinuro. At Ustica and Palinuro, bonsai shoots we found exclusively on rocky bottoms, while at Ischia they occurred on the dead P. oceanica matte, both within vent systems and in control areas. Bonsai shoots exhibited a reduced number of leaves, significantly shorter leaf length and width, resulting in a drastic reduction of total leaf surface area (84–95 % lower) and biomass (82–97 % lower) compared to nearby regular-sized shoots. In addition, bonsai shoots lacked the typical annual cycle of leaf sheath thickness observed in normal shoots (lepidochronological cycle), as previously observed in bonsai from other sites. The high number of sheaths recorded per rhizome length, suggests high leaf production and turnover. The occurrence of bonsai shoots on dead matte at the meadow margins and in small clearings, or behind regular terminal shoots on creeping rhizomes in hard bottoms, leads to hypothesize that Posidonia bonsai represents a novel growth and colonization strategy, probably trigged by stressful conditions, not limited to ocean acidification, and point out the remarkable phenotypic plasticity of this seagrass.
Continue reading ‘Posidonia bonsai: dwarf morphotypes of Posidonia oceanica in CO2 vents and non-vents areas suggest a novel growth strategy’Volcanic bubbles in Papua New Guinea a window into coral’s future
Published 9 December 2025 Press releases ClosedTags: corals, South Pacific, vents
By the end of this century, coral reefs in Australia and around the world could be slower to recover, structurally simpler, and increasingly dominated by fleshy algae as rising carbon dioxide reshapes ocean chemistry.
These are the predictions that new international research – published this week in Communications Biology – is warning against, as scientists present a volley of stark new findings about the current and long-term impact of a process known as ocean acidification.
As the oceans absorb more carbon dioxide from the atmosphere, they are becoming increasingly acidic – eroding the very calcium carbonate skeletons that build coral reefs. Yet despite decades of laboratory studies and ecosystem models, scientists have lacked real-world systems that reflect how entire reef communities respond to these long-term chemical shifts.
Researchers from the Australian Institute of Marine Science (AIMS) have now filled that gap by studying shallow-water reefs naturally bathed in volcanic CO₂. These reefs, located near remote submarine vents in Papua New Guinea’s Milne Bay Province, experience chronic exposure to elevated carbon dioxide, offering scientists a rare preview of the seascapes expected under future emissions scenarios.
Continue reading ‘Volcanic bubbles in Papua New Guinea a window into coral’s future’Progressive changes in coral reef communities with increasing ocean acidification
Published 8 December 2025 Science ClosedTags: algae, BRcommunity, chemistry, community composition, corals, field, otherprocess, vents
Ocean acidification from increasing atmospheric CO2 is progressively affecting seawater chemistry, but predicting ongoing and near-future consequences for marine ecosystems is challenging without empirical field data. Here we quantify tropical coral reef benthic communities at 37 stations with varying exposure to submarine volcanic CO2 seeping, and determine the aragonite saturation state (ΩAr) where significant changes occur in situ. With declining ΩAr, reef communities displayed progressive retractions of most reef-building taxa and a proliferation in the biomass and cover of non-calcareous brown and red algae, without clear tipping points. The percent cover of all complex habitat-forming corals, crustose coralline algae (CCA) and articulate coralline Rhodophyta declined by over 50% as ΩAr levels declined from present-day to 2, and importantly, the cover of some of these groups was already significantly altered at an ΩAr of 3.2. The diversity of adult and juvenile coral also rapidly declined. We further quantitatively predict coral reef community metrics for the year 2100 for a range of emissions scenarios, especially shared socio-economic pathways SSP2-4.5 and SSP3-7.0. The response curves show that due to ocean acidification alone, reef states will directly depend on CO2 emissions, with higher emissions causing larger deviations from the reefs of today.
Continue reading ‘Progressive changes in coral reef communities with increasing ocean acidification’Distinct biochemical profiles in Antarctic seaweeds reflect acclimation to polar and hydrothermal environments with implications for biomass nutritional value
Published 1 December 2025 Science ClosedTags: algae, Antarctic, biological response, chemistry, field, physiology, vents
Highlights
- Chlorophyll a content in some seaweed species increased with latitude along the Antarctic Peninsula.
- Seaweeds from fumarole vent sites revealed variations in fatty acids and pigments.
- Lower nutritional value in Antarctic seaweeds from fumarole sites suggests potential responses to ocean warming and acidification.
- Species-specific biochemical shifts in Antarctic seaweeds are anticipated under global change scenarios.
Abstract
Global change is driving ocean warming (OW) and acidification (OA), impacting marine ecosystems worldwide, including polar regions. Seaweeds, as key primary producers in coastal ecosystems, synthesize a wide range of biochemical compounds that support higher trophic levels. Their biochemical composition is conditioned by local environmental factors, including seawater temperature, pH, and nutrient availability. However, how polar seaweeds respond to ongoing global change remains poorly understood. In this study, we examined the influence of local environmental changes on the biochemical composition – including fatty acids (FA), pigments, carbon, and nitrogen – of nine Antarctic brown and red seaweed species. Specifically, we considered a latitudinal gradient from the South Shetland Islands (⁓62°S) to Yalour Island (⁓65°S), and the presence of active fumarole vents at Deception Island. Our results reveal species-specific and location-dependent biochemical shifts in most species. While chlorophyll a concentrations tended to increase with latitude, specimens collected from fumarole vents exhibited a reduction in total FA content, PUFA:SFA (polyunsaturated to saturated fatty acid) ratios, PUFA omega-3, and pigment concentrations. These shifts under hydrothermal influence are likely driven by elevated seawater temperatures and acidic conditions, suggesting a potential decline in nutritional value under future global change scenarios. Additionally, higher magnesium content was found in the skeletons of crustose coralline algae from shallow waters than in those at 22 m depth. Our results highlight the species-specific nature of biochemical responses to environmental stressors, underlining the complexity of predicting the impacts of global change on seaweed physiology and the potential cascading effects on Antarctic food webs.
Continue reading ‘Distinct biochemical profiles in Antarctic seaweeds reflect acclimation to polar and hydrothermal environments with implications for biomass nutritional value’
