Archive Page 3

Explainable machine learning models for coastal pH forecasting at aquaculture-relevant thresholds in Eastern Canada

Highlights

  • Benchmark of ML models for coastal pHSWS forecasting.
  • Models trained on rare high-frequency data from Eastern Canada.
  • XGBoost balances sensitivity and precision at pHSWS < 7.75
  • SHAP shows Julian day dominance as composite environmental driver.
  • Promising low-cost framework for aquaculture acidification early warning.

Abstract

Ocean acidification poses a growing threat to marine ecosystems and aquaculture productivity, particularly in under-monitored coastal regions such as Eastern Canada. Existing pH prediction frameworks typically rely on multi-year records combining extensive carbonate chemistry, physical, and biological parameters. While these models can achieve high accuracy, their data requirements make them costly, complex, and challenging to implement for local, site-specific acidification forecasting in aquaculture contexts. To address this limitation, this study benchmarks several machine learning models for coastal pHSWS prediction using only three routinely measured environmental variables (temperature, salinity, sea level), from which we derived moving-average descriptors, local gradients, and two temporal indicators, resulting in a compact set of 11 input features. Six different models and a multivariate linear regression baseline were trained on one of the most complete and extended high-frequency datasets available (BSSS2018) and evaluated across four independent datasets: one from the same site but six months earlier (BSSS2017), and three from nearby bays in northeastern New Brunswick collected between 2017 and 2019. Among all tested models, XGBoost emerged as the most reliable and interpretable, achieving the best trade-off between sensitivity and precision at the operational acidification threshold (pHSWS < 7.75). Its performance remained acceptable within-site but declined across bays due to environmental and seasonal discrepancies, underscoring the importance of training data representativeness. SHAP-based explainability confirmed that Julian day was the dominant predictor, integrating the composite effects of seasonal environmental variability. Overall, this study demonstrates that using only low-cost, routinely measured features provides a promising foundation for short-term coastal pH forecasting, particularly for aquaculture monitoring needs. Despite limited inter-bay generalization, the proposed framework shows that interpretable machine learning models can deliver actionable early-warning insights under realistic data constraints. It constitutes one of the first data-driven benchmarks explicitly tested at aquaculture-relevant thresholds, highlighting a scalable and transparent approach toward operational acidification forecasting.

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An indoor mesocosm system for cost-effective simulation of multiple ocean stressors affecting marine organisms

Global climate change is exacerbating multiple ocean stressors, including ocean acidification (OA), ocean warming (OW), and deoxygenation (deOxy), which collectively threaten marine ecosystems and fisheries. Understanding how these stressors interact to shape organismal and ecosystem responses is increasingly critical, yet it remains technically challenging and expensive to simulate them concurrently under controlled indoor conditions. To address this limitation, we developed a closed indoor mesocosm system that enables stable and long-term simulation of these three stressors for biological and aquaculture research. The system maintains consistent levels of CO2, temperature, and dissolved oxygen (DO) over multi-month experiments without automated control units, relying instead on robust initial settings. High-purity CO2 and N2 gases are blended with ambient air in controlled ratios to regulate carbonate chemistry and oxygen levels, while chillers and heaters ensure precise temperature control. Validation experiments demonstrated that the system can (1) increase pCO2 to approximately twice the present-day level with a pH reduction of ~ 0.22 units, (2) elevate temperature by + 3 °C above ambient temperature, and (3) reduce DO by up to 40% relative to ambient concentration, reflecting projected climate scenarios. This simple and versatile mesocosm provides a practical platform for investigating the ecophysiological responses of marine organisms under multi-stressor environments, supporting research on climate adaptation and aquaculture resilience.

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Pier2Peer alumni showcase webinar

Date: January 23, 2026
Time:
 7:00 – 8:30 AM ET // 12:00 -13:30 UTC
Location: Virtual

Register

Join us for a webinar showcasing research from Pier2Peer Alumni on Friday, 23 January 2026 from 12:00- 1:30 pm UTC. In this webinar, we’ll be joined by two Pier2Peer Scholarship recipients to learn about their research and mentorship experiences.

Dr. M. Anand will be presenting “ARMS (Autonomous Reef Monitoring Structures) – an emerging tool to monitor ocean acidification and coral reef health”. Dr. M. Anand is an Associate Professor and Head in the Dept. of Marine and Coastal Studies, School of Energy, Environment and Natural Resources, Madurai Kamaraj University, Tamil Nadu, India. During his participation in Pier2Peer, he was mentored by Dr. Aileen Tan Shau Hwai and received the 2023 Pier2Peer Scholarship.

Dr. Georgina D. Cepeda will be presenting “Planktonic calcifiers under pressure: implementation and results from ocean acidification training in the SW Atlantic Ocean”. Dr. Cepeda is a researcher at Instituto de Investigaciones Marinas y Costeras (IIMyC), CONICET-Universidad Nacional de Mar del Plata, Instituto Nacional de Investigación y Desarrollo Pesquero (INIDEP), Mar del Plata, Argentina. During her tenure with Pier2Peer, Dr. Cepeda was mentored by Dr. Nina Bednarsek and received the 2025 Pier2Peer Scholarship. 

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Integrated biochemical profiling, comparative transcriptome and weighted gene co-expression network analysis to explore the response mechanism of global warming and ocean acidification to the stress of Sepia esculenta larvae

Highlights

  • Multi-angle analysis of Sepia esculenta under global warming and ocean acidification.
  • Stress enhanced the immune defense and antioxidant defense of S.esculenta.
  • The hub genes closely related to stress resistance were identified and screened out.
  • Provided a theoretical basis for the breeding of fine varieties and pond culture.

Abstract

The Sepia esculenta has high economic value and nutritional value, and accounts for a high proportion of the catch of cephalopods in China ‘s coastal waters. Global warming and ocean acidification, as major environmental problems currently facing the world, have a serious negative influence on the survival and breeding of S. esculenta. Therefore, in the research, transcriptome sequencing and biochemical quantitative analysis were performed on the larvae of S. esculenta after high temperature, low pH and combined stress at different time points, and the differential expressed genes (DEGs) and response mechanisms were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that these DEGs were mainly involved in a large number of immune-related biological processes and signaling pathways, including Immune response、Phagocytosis、Regulation of DNA-templated transcription and Positive regulation of DNA-templated transcription. Then, we further explored the functional relationship between these DEGs by constructing weighted gene co-expression network and protein-protein interaction networks. We identified ten hub genes including HSP90AA1ALDH1L1VPS13AMAPK8IP1 and KDM6A. These hub genes may play an important role in the face of high temperature, low pH and their combined stress at different times. Our findings not only elucidate the molecular response mechanisms of S. esculenta to environmental stress and delineate the key regulatory pathways underlying its adaptation, but also provide a theoretical foundation for advancing pond cultivation.

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New link: register for Pier2Peer webinar – 23 January

Register for the Pier2Peer Alumni Webinar! Join us for a webinar showcasing research from Pier2Peer Alumni on Friday, 23 January 2026 from 12:00- 1:30 pm UTC. In this webinar, we’ll be joined by two Pier2Peer Scholarship recipients to learn about their research  experiences.
 
Register Now
  Speakers Dr. M. Anand will be presenting “ARMS (Autonomous Reef Monitoring Structures) – an emerging tool to monitor ocean acidification and coral reef health”. Dr. M. Anand is an Associate Professor and Head in the Dept. of Marine and Coastal Studies, School of Energy, Environment and Natural Resources, Madurai Kamaraj University, Tamil Nadu, India. During his participation in Pier2Peer, he was mentored by Dr. Aileen Tan Shau Hwai and received the 2023 Pier2Peer Scholarship.
  Dr. Georgina D. Cepeda will be presenting “Planktonic calcifiers under pressure: implementation and results from ocean acidification training in the SW Atlantic Ocean”. Dr. Cepeda is a researcher at Instituto de Investigaciones Marinas y Costeras (IIMyC), CONICET-Universidad Nacional de Mar del Plata, Instituto Nacional de Investigación y Desarrollo Pesquero (INIDEP), Mar del Plata, Argentina. During her tenure with Pier2Peer, Dr. Cepeda was mentored by Dr. Nina Bednarsek and received the 2025 Pier2Peer Scholarship. 
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Interannual variability of oceanic pH in a highly human-perturbed bay in China

Due to anthropogenic carbon dioxide (CO2) emissions, open oceans are acidifying, and the acidification rate is relatively stable. While coastal waters experience even greater pH fluctuations from terrestrial inputs, upwelling, and biological activity, this variability necessitates detailed long-term research in these regions. Based on field observations and historical literature data from 1980 to 2016, the interannual variability of seawater pH and its driving mechanisms were analyzed in Jiaozhou Bay, a highly human-perturbed bay in China. The results revealed an overall decreasing trend in pH over the three-decade period, with a decline rate of 0.0062 years−1, which is 3.6 times faster than that observed in the open ocean, indicating significant anthropogenic impacts on pH variations in Jiaozhou Bay. The long-term pH changes showed strong correlations with coastal environmental pollution status, characterized by three distinct phases: a decline from 1980 to 1986, followed by an increase during 1991 to 2004, and subsequently another decreasing trend from 2004 to 2016. Terrestrial (including wastewater) inputs were identified as predominant anthropogenic factors influencing these pH variations. Furthermore, this study highlights that while future management should focus on reducing organic matter and nutrient inputs, particular attention should be paid to the direct impacts of dissolved inorganic carbon (DIC) from treated wastewater discharge on pH reduction.

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Ocean acidification threatening world’s shellfish (video)

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Ocean acidification and anthropogenic carbon in the Eastern Mediterranean Sea and the effects of acidification on marine organisms

Ocean acidification (OA), driven by rising atmospheric carbon dioxide (CO2) levels, is a critical issue affecting our oceans. The Eastern Mediterranean Sea (EMS) remains poorly understood in terms of the carbonate system and the impact of OA, despite its key role in Levantine Intermediate Water (LIW) formation and its peculiar characteristics in buffering capacity and ongoing OA. This study provides the first comprehensive spatial and temporal assessment of carbonate system in the North-Eastern Levantine Basin, in EMS, providing essential reference data for Total Alkalinity (TA), Dissolved Inorganic Carbon (DIC), and Anthropogenic Carbon (CANT). The mean TA of the measurements was 2622.11 μmol/kg, with higher surface values in summer, reflected also in the surface salinity (S) maximum caused by strong evaporation. A clear vertical gradient was observed, with TA decreasing with depth. Hot and dry meteorological conditions contribute to increased S and TA, resulting in seasonal and vertical variations in the water column. The mean DIC of the measurements was 2291.23 μmol/kg. In contrast to the observations for TA, surface DIC values were higher in winter than in summer. The higher DIC values in winter are attributed to thermodynamic equilibrium and vertical mixing in the surface waters. This study has also investigates the presence of CANT, has infiltrated deep layers, with a mean concentration of 52.07 μmol/kg, decreasing significantly throughout the water column. These findings confirms the ongoing influence of human activities on intermediate and deep layers in EMS. To reconstruct past carbonate system dynamics, the relationships of TA and DIC were determined with salinity (S) and temperature (T) data. Long-term data from METU-IMS Erdemli Time Series (ETS) stations, collected monthly for a decade, provided valuable findings into seasonal patterns and temporal shifts in TA, DIC, and pH. The coastal station displayed clear trends in the carbonate system over time, reflecting its sensitivity to local environmental changes. In contrast, the offshore station exhibited minimal variability, indicating greater stability against seasonal and long-term fluctuations. These results highlight the heightened vulnerability of coastal waters to carbonate system changes, while offshore waters remain more stable. Understanding carbonate chemistry and acidification levels is crucial for assessing impacts on marine life. In addition to the characterization of carbonate chemistry, this study also explores OA’s biological impacts on two key organisms of the Mediterranean ecosystem: phytoplankton and mussels. Firstly, effects of elevated CO₂ on phytoplankton, an essential primary producer in aquatic food webs and global biogeochemical cycles are explored. Specifically, the study explores the impacts on phytoplankton physiology, focusing on growth rates, respiration, and photopigment content in selected species from the coccolithophores, dinoflagellates, and diatoms groups. While growth rates and respiration remained relatively stable under reduced pH conditions, photopigment content was significantly influenced by changes in seawater pH, highlighting the importance of considering environmental influences on photopigment composition. The study further investigated the effects of acidification on calcifying organisms through a global program aimed at understanding the long-term effects of acidification on key seafood species and exploring adaptation strategies with a collaborative approach. This study focused on the long-term (6 months long experiment) physiological impacts of OA on marine calcifiers, specifically Mediterranean mussel, Mytilus galloprovincialis, an abundant species and one of the most consumed non-fish marine species in Türkiye. Results indicate that OA poses a substantial threat to mussel health and survival. Reduced pH levels negatively impacted survival rates, while other physiological parameters like clearance rate, condition index, respiration, and the distribution of a radionuclide, 210Po, did not significantly change. However, lipid content and immune response were affected. Oxygen consumption decreased over time, especially at lower pH. This study underscores the potential risks of OA to the fitness of the commercially important mussel species, indicating that future OA may impact both this key seafood species and its associated ecosystems. The established baseline data are crucial for future monitoring and provide valuable insights into the vulnerability of marine organisms and ecosystems to ongoing OA. By integrating chemical, biological, and ecological perspectives, this dissertation offers a comprehensive assessment of OA in EMS. It establishes baseline data for carbonate system variables, revealing distinct spatial and temporal variations influenced by S, T, and mixing processes. By linking changes in carbonate chemistry to physiological responses in primary producers and a commercially vital shellfish species, this study highlights the ecological and economic impacts of OA in EMS. The findings emphasize the need for continued research and mitigation efforts to protect marine ecosystems and commercially important species. This integrated approach provides valuable insights into the vulnerability of marine organisms and ecosystems to ongoing OA, underscoring the significance of this research for the Mediterranean Sea.

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Time series in the Mediterranean Sea

13 January 2026/Kiel/Limassol. Today, Expedition M216 set sail for the Mediterranean Sea with the research vessel METEOR. An international research team led by GEOMAR Helmholtz Centre for Ocean Research will assess the state of the Mediterranean over the coming weeks. The research is conducted as part of a time series that was last carried out in 2018. The data collected now are therefore central to assessing current and future changes in the Mediterranean Sea. Among other things, temperature, salinity, nutrients and trace gases are being investigated, as well as the stratification and circulation of the water masses.

Like the Baltic Sea and the Black Sea, the Mediterranean Sea is an inland sea connected to the global ocean only by the Strait of Gibraltar. As a result, it responds more quickly to changes. It warms more rapidly, absorbs more carbon dioxide and acidifies more strongly than the open ocean. At the same time, through its connection with the Atlantic, the Mediterranean Sea also influences the global ocean and additionally plays an important role for the regional climate, fisheries and tourism.

Several factors come together in the Mediterranean Sea: it has a very high salinity and pronounced water circulation. The high salt concentration and temperature promotes the uptake of anthropogenic CO2. At the same time, surface water is transported relatively quickly to the depth, where it remains at a temperature of around 12 to 13°C. In addition, the circulation ensures that deep water reaches the surface, which can again absorb CO2. This creates a dynamic cycle that enables the Mediterranean Sea to bind a comparatively large amount of CO2 from the atmosphere,” explains Dr Toste Tanhua, expedition leader and chemical oceanographer at GEOMAR.

Measurements from the surface to the sea floor

The measurements cover the entire water column, i. e. all layers of the Mediterranean Sea from the surface to the sea floor. At its deepest point, the Mediterranean Sea is over five thousand metres deep. “The unique topography of the Mediterranean Sea is challenging for us. There are several basins with different conditions and water depths,” says Toste Tanhua. The expedition focuses on measuring nutrients, salinity, oxygen, alkalinity, dissolved inorganic carbon, organic carbon, COand the degree of ocean acidification. This enables the researchers to deduce how the Mediterranean Sea is faring under the influence of climate change and to estimate further changes. They are also investigating the distribution of water masses, currents and the exchange between surface water and the deep ocean.

“The Med-SHIP programme gives us the opportunity to take a very close look at the individual components of the entire water column. Among other things, we will be investigating inorganic carbon. This refers to carbon that is not found in living organisms, but in rocks, water or in the atmosphere as CO2. Among other things, it is responsible for transporting CO2 between the atmosphere, the surface and deep water. As the water masses in the Mediterranean are in contact with the atmosphere relatively frequent, this is particularly interesting for us,” explains Toste Tanhua.

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Effects of pH on growth and anatomical characters of tapeseagrass (Enhalus acoroides (Linnaeus f.) Royle)

Enhalus acoroides (Linnaeus f.) Royle or tape seagrass plays a vital role in tropical seagrass meadows, especially in Thailand. While ocean acidification negatively affects many marine species, it may benefit tropical seagrasses. E. acoroides relies on seed dispersal for sexual reproduction, and pH variations may influence seedling development. This study examined the effects of pH levels (6, 7, 8, and 9) on E. acoroides seedling growth over 8 weeks in controlled aquariums. All treatments showed 100% seed germination during the first week. By week 2, no significant differences in biomass were observed, but by week 8, seedlings at pH 6 had the highest dry weight (0.21±0.01 g), as well as the greatest leaf number (5.64±0.15 leaves), leaf length (23.39±2.06 mm), and leaf width (4.74±0.14 mm). One-way ANOVA revealed significant differences in growth by week 8. Lower pH levels enhanced shoot and root growth, while higher pH increased root number but reduced root length. Chlorophyll content analysis showed no correlation with pH after 8 weeks. Anatomical examination revealed tannin cells, starch granules, and thick cell walls in the mesophyll, with an enlarged exodermis in lower pH treatments, suggesting an adaptation for stabilizing in muddy, acidic conditions. These findings indicate that pH influences the growth and adaptation of E. acoroides seedlings, highlighting the species resilience to acidification. Its adaptive capacity is crucial for management, as E. acoroides can survive acidification and continue providing habitat, preserving ecosystem balance.

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Co–occurring aquatic acidification and hypoxia promote methane emissions from estuarine ecosystems

Highlights

  • Acidification, hypoxia, and the combined effect enhanced CH4 emission from estuary.
  • Acidification and hypoxia exerted contrasting regulatory mechanisms on CH4 emission.
  • Acidification raised CH4 release by suppressing methanotrophs more than methanogens.
  • Hypoxia preferentially enhanced methanogenic activity over CH4 oxidation.
  • Oxygen availability dominated CH4 dynamics under acidification–hypoxia interactions.

Abstract

Estuaries worldwide are experiencing intensifying acidification and hypoxia, driven synergistically by anthropogenic activities and global climate change. Nevertheless, their combined impact on the emissions of the potent greenhouse gas methane (CH4) and its underlying regulatory mechanisms remains poorly understood, undermining our ability to project climate feedbacks. Here, we integrated 13C stable isotope tracing, DNA/mRNA–based qPCR, and amplicon/metagenomic sequencing to unravel how acidification–hypoxia interactions regulate the complex balance between CH4 production and consumption in estuarine sediments. Results showed that aquatic acidification and hypoxia combined to significantly increase CH4 emissions from estuarine sediments (P < 0.05), in a non-additive (antagonistic) manner where oxygen availability was the dominant factor governing this response. Notably, acidification increased CH4 emissions by suppressing methanotrophy more strongly than methanogenesis, whereas hypoxia preferentially stimulated methanogenic activity over CH4 oxidation. These response patterns were further demonstrated by metagenomic sequencing and mRNA-based quantitative PCR analyses, which revealed coordinated shifts in both the relative abundance and transcriptional activity of key functional genes. These findings uncover a previously overlooked mechanism whereby the worldwide co-occurrence of acidification and hypoxia in estuarine ecosystems jointly promote CH4 emissions, providing a scientific basis for improving predictive models of the global CH4 cycle and its climate feedbacks under combined anthropogenic and climatic stressors.

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Ocean acidification modulates material flux linked with coral calcification and photosynthesis

Coral reefs are essential for the foundation of marine ecosystems. However, ocean acidification (OA), driven by rising atmospheric carbon dioxide (CO2) threatens coral growth and biological homeostasis. This study examines two Hawaiian coral species—Montipora capitata and Pocillopora acuta to elevated pCO2 simulating OA. Utilizing pH and O2 microsensors under controlled light and dark conditions, this work characterized interspecific concentration boundary layer (CBL) traits and quantified material fluxes under ambient and elevated pCO2. The results of this study revealed that under increased pCO2P. acuta showed a significant reduction in dark proton efflux, followed by an increase in light O2 flux, suggesting reduced calcification and enhanced photosynthesis. In contrast, M. capitata did not show any robust evidence of changes in either flux parameters under similar increased pCO2 conditions. Statistical analyses using linear models revealed several significant interactions among species, treatment, and light conditions, identifying physical, chemical, and biological drivers of species responses to increased pCO2. This study also presents several conceptual models that correlate the CBL dynamics measured here with calcification and metabolic processes, thereby justifying our findings. We indicate that elevated pCO2 exacerbates microchemical gradients in the CBL and may threaten calcification in vulnerable species such as P. acuta, while highlighting the resistance of M. capitata. Therefore, this study advances our understanding of how interspecific microenvironmental processes could influence coral responses to changing ocean chemistry.

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Empowering environmental awareness through chemistry: a science–technology–society–environment-based approach to teaching acid–base reactions in 11th-grade science

This study examines the impact of a Science–Technology–Society–Environment (STSE) educational intervention on the teaching of acid–base reactions to 11th-grade students (n = 17). The didactic sequence combined laboratory experiments, real-data analysis, and an interdisciplinary role-play debate, designed to connect chemical concepts with pressing socio-environmental challenges such as ocean acidification, acid rain, and acid mine drainage. Data collection included a pre- and post-test on environmental awareness and semi-structured interviews, enabling the assessment of both conceptual learning and attitudinal change. Significant conceptual gains were observed, with five of eleven test items reaching a normalized Hake gain ≥ 0.70, alongside increased environmental awareness. Qualitative findings further revealed that students valued the real-world context and interdisciplinary integration, reporting enhanced motivation, civic responsibility, and a more meaningful engagement with science. Overall, the results suggest that STSE-based chemistry instruction not only strengthens students’ understanding of acid–base equilibria but also fosters sustainability competencies essential for responsible and informed citizenship in the 21st century.

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Developing indicators of risk to environmental variability based on species dependency in U.S. fishing communities in the Northeast and Southeast Regions

Fishing communities worldwide have or are likely to experience social, economic, and cultural impacts from environmental variability. Changes in marine fisheries will require adaptation by fishing communities and fisheries managers alike. Here, Community Environmental Variability Risk Indicators (CEVRI) were developed to assess risk to environmental change for fishing communities in the U.S. Northeast and Southeast Regions based on spatial and temporal trends between 2000 and 2022. To accomplish this, we analyzed commercial landings value as it relates to species level Climate Vulnerability Assessment (CVA) scores for species considered commercially, recreationally, and ecologically important. The CVA considers the vulnerability of species to 12 sensitivity and 12 exposure factors relating to important environmental factors within the regional context. Here, we used three sensitivity factors: Stock Size/Status, Ocean Acidification, and Temperature, as well as Total Sensitivity and Total Vulnerability. Community level scores were used to analyze intra and inter region variation, and to understand trends in community risk as revenue dependence on different species changes through time. In general, communities in the Gulf of America/Florida Keys sub-region presented lower risk to the factors analyzed than the South Atlantic sub-region and the Northeast. Ocean Acidification was the sensitivity factor with the highest levels of risk for communities. The findings of this study have important applications to inform decision-making and to help communicate environmental variability associated risks to broader audiences, thus further developing the ability of stakeholders to understand and assess cumulative impacts and complex trade-offs affecting the sustainability of marine ecosystems and resources.

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Assessing impacts of extreme climate and weather events on endangered pearl oysters Pinctada maxima

Extreme climate and weather events in the ocean, especially ocean acidification (OA) and marine heatwaves (MHWs), have strikingly accelerated in the past decades, yet their compound consequences remain poorly understood. The pearl oyster (Pinctada maxima), an endangered keystone species in Indo-Pacific reef ecosystems, is highly vulnerable to such events. Here, we assessed how OA-stressed P. maxima juveniles responded to MHWs (+3 °C), based on a total of 100 individuals exposed to two weeks. Oysters reared at pH 7.7 significantly increased activities of energy-metabolizing enzymes (T-ATP and NKA) in response to MHWs, whereas both enzymes significantly decreased, albeit CMA increased, at pH 7.4. MHWs significantly depressed antioxidant enzyme activities, such as SOD at both pH levels, resulting in elevated MDA levels indicative of lipid peroxidation. Contrasting responses of immune enzymes (ACP and AKP) to MHWs were seen in oysters grown under moderately and severely acidified conditions. MHWs, also, significantly depressed expression levels of key genes related to cellular metabolism (ATP1AATP1BND5ATPeV1F and ATPeF1A) and those associated with antioxidant defence (SODSOD1SOD2Hsp70Hsp90 and CAT), in particular when stressed at pH 7.4. Taken together, our findings suggest that intensifying MHWs can constrain the ability of P. maxima to cope with OA and likely accelerate further population decline in this era of unprecedented climate change.

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Physiological and transcriptomic responses of a harmful algal bloom-causing dinoflagellate Karenia mikimotoi to multiple environmental factors

Highlights

  • Elevated temperature was the primary factor significantly reducing K. mikimotoi growth and photosynthesis.
  • Increased pCO₂ and high N: P ratios partially mitigated thermal stress induced by elevated temperature.
  • K. mikimotoi consistently up-regulated energy and lipid metabolism to cope with environmental stressors irrespective of treatment.
  • K. mikimotoi may persist and even thrive under multiple stressors, subsequently influencing productivity and biogeochemical cycles.

Abstract

Dinoflagellates play a crucial role in marine food webs and biogeochemical cycles, yet they are increasingly affected by global environmental changes. While there is limited understanding of their response to individual stressors projected under future oceanic conditions, their response to multiple concurrent environmental stressors remains inadequately explored. This study investigated the singular and interactive effects of elevated temperature (26 °C vs. 22 °C), increased pCO2 (1000 μatm vs. 400 μatm), and a high nitrogen-to-phosphorus ratio (N:P = 180:1 vs. 40:1) on the harmful algal bloom-forming dinoflagellate Karenia mikimotoi over a 40-day exposure period. Among these factors, elevated temperature exerted the most pronounced influence, markedly reducing the cell growth rate and photosynthesis while simultaneously increasing the particulate organic matter content and antioxidant level. Transcriptomic analyses indicated that elevated temperature enhanced the expression of genes associated with oxidative stress, suggesting a potential defense mechanism against thermal stress. Notably, increased pCO2 and a high N:P ratio appeared to mitigate thermal stress to some extent. Irrespective of the treatment, K. mikimotoi demonstrated a consistent response strategy characterized by the synergistic upregulation of energy metabolism and lipid biosynthesis pathways, coordinated by the modulation of both upstream and downstream genes in the tricarboxylic acid cycle. This metabolic reprogramming likely facilitates a more efficient allocation of energy, thereby enhancing the resilience of K. mikimotoi to environmental stress. This study underscores the interactive effects of multiple stressors on marine dinoflagellates, highlighting that elevated temperature is the most critical factor affecting dinoflagellates in future oceanic environments.

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Seasonal and regional dynamics of carbonate chemistry and buffering capacity in contrasting marine systems: the Northeastern Mediterranean and the Sea of Marmara

This thesis investigates seasonal and spatial variability in carbonate system dynamics and buffering capacity across two contrasting semi enclosed Turkish seas: the oligotrophic Northeastern Mediterranean and the eutrophic Sea of Marmara. Data were collected in winter and summer on research cruises conducted in 2022–2023. High quality multi-index measurements included total alkalinity (TA), nutrients, and spectrophotometric pH. Derived carbonate system parameters were calculated with PyCO2SYS, and a standardized, layer-based approach was applied to reflect regional hydrography and vertical structure. The Sea of Marmara showed high TA, often above 2700 μmol kg⁻¹, together with elevated dissolved inorganic carbon (DIC) below the halocline due to respiration and weak ventilation. Revelle factors were high, vertical gradients in pH and aragonite saturation state were strong, and hypoxia was present in sub halocline and deep waters. In the Northeastern Mediterranean, TA and DIC were lower and more stable. Revelle factors were lower, and buffering was stronger in surface and intermediate layers, with only modest sensitivity increases at depth. Advanced indices added diagnostic value beyond the Revelle factor. In the Sea of Marmara, βDIC and γDIC were highest below the halocline, identifying where small DIC additions most strongly raise the partial pressure of carbon dioxide (pCO₂) and lower pH. γAlk and ωAlk indicated greater benefit of marginal TA gains at depth. ωDIC isolated saturation state sensitivity to carbon loading in respiration dominated layers. In the Northeastern Mediterranean, the Revelle factor captured first order seasonal shifts in well mixed winter layers, while the advanced indices flagged narrow coastal and subsurface windows of rising sensitivity. These results provide the first multi seasonal, multi-index baseline for Turkish seas. They show that eutrophication, stratification, and ventilation control local acidification risk and that advanced buffer indices sharpen process attribution. The study supports monitoring that couples carbonate chemistry with oxygen and nutrients and guides management toward nutrient reduction and protection of sub halocline habitats where buffering is weakest.

Continue reading ‘Seasonal and regional dynamics of carbonate chemistry and buffering capacity in contrasting marine systems: the Northeastern Mediterranean and the Sea of Marmara’

Acute CO2 toxicity and the effects of seawater acidification on health status, histopathology, immunity and disease resistance in Asian Seabass (Lates calcarifer)

Carbon dioxide capture and storage (CCS) is a technology that can be used to reduce carbon dioxide (CO2) emissions generated by both natural and anthropogenic industrial processes, particularly petroleum production. To mimic and investigate the effects of CO2 leakage that may result from CCS, the acute toxicity of seawater acidification induced by continuous CO2 injection was studied in Asian seabass (Lates calcarifer) fry under static bioassay conditions. Fry (0.828 ± 0.22 g) were exposed to seawater with different pH levels (5.5, 6.0, 6.5, 7.5, and 8.3). Rapid and 100% mortality within 15 min was observed in the pH 5.5 exposure group, while mortality rates ranging from 10.00–41.67% were recorded at 6–96 h in the pH 6.0 exposure group; no mortality was noted in the other pH exposure groups. According to these mortality data, the median lethal concentration at 96 h (96 h LC50) was determined to be a pH of 5.884. Interestingly, after exposure to seawater with pH levels of 5.5 and 6.0, histopathological alterations in the skin, gills, trunk kidney and liver were evident. Additionally, some water quality parameters, especially dissolved oxygen (DO) levels, alkalinity, ammonia levels, and nitrite levels, vary depending on the pH. To further investigate the effects of seawater with pH levels of 8.3 and 5.884 (96 h LC50) and 6.5 (10% safety level) on health status, immune responses and disease susceptibility, fingerling fish (21.25 ± 3.89 g) were studied. Unexpectedly, fish exposed to seawater with a pH of 5.884 rapidly lost muscle control and gradually died, reaching 100% mortality within 24 h, and all response analyses were aborted. Interestingly, with the exception of hematocrit and some immune parameters, various serum innate immune indices, blood biochemistry parameters and immune-related gene expression patterns were similar in fish exposed to seawater with pH levels of 8.3 and 6.5. Additionally, fish were challenged with 0 (control), 1 × 107 and 1 × 109 CFU/mL Vibrio vulnificus, and fish in seawater with a pH level of 6.5 showed a higher sensitivity to 1 × 109 CFU/mL Vibrio vulnificus than fish in seawater with a pH level of 8.3, with mortality rates of 71.24% and 25.44%, respectively (p < 0.05). These findings enhance the understanding of the toxicity effects of seawater acidification caused by CO2, which will be useful for further assessing the site-specific effects of CCS projects.

Continue reading ‘Acute CO2 toxicity and the effects of seawater acidification on health status, histopathology, immunity and disease resistance in Asian Seabass (Lates calcarifer)’

From pollution to ocean warming: the climate impacts of marine microplastics

Highlights

  • MPs disrupt nutrient cycling and influence climate-related processes.
  • MPs interact with ocean warming and acidification, amplifying ecological impacts.
  • Combined effects of MPs, warming, and acidification threaten marine ecosystem stability.
  • MP pollution hinders progress toward multiple UN SDG targets.

Abstract

Despite being a critical global issue, the role of microplastics (MPs) in climate change has received limited attention. Climate disruption and plastic pollution are two major environmental challenges that intersect in complex ways. MPs influence biogeochemical processes, disrupt oceanic carbon pumps, and contribute directly to greenhouse gas (GHG) emissions. In marine ecosystems, MPs alter the natural carbon sequestration by affecting phytoplankton and zooplankton, which are key agents of carbon cycling. Additionally, the plastisphere, a microbial community colonizing MPs, plays a significant role in GHG production due to its diverse microbial networks. This review highlights the close relationship between MP pollution and climate change, suggesting that MPs may significantly contribute to climate change and potentially further affect ocean health in the form of ocean warming and ocean acidification. Given the interconnected nature of these challenges, a holistic and integrated strategy is essential to effectively address them. Furthermore, this article examines MP pollution through the lens of the UN Sustainable Development Goals (SDGs) and human rights, recognizing that MP pollution can hinder the implementation of sustainable strategies and action plans necessary for achieving the SDGs.

Continue reading ‘From pollution to ocean warming: the climate impacts of marine microplastics’

Strength and duration of diel pH and dissolved oxygen cycles control the survival and performance of early life stage North Atlantic bivalves (Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians and Mytilus edulis)

Highlights

  • Cycling from nocturnal hypoxia – acidification to mild hyperoxia- hypocapnia reduced larval survival in all experiments.
  • Cycling from nocturnal hypoxia – acidification to normoxia- normocapnia reduced survival of larvae in 50 % of experiments.
  • Nocturnal hypoxia and acidification caused increased clearance and respiration rates in juvenile mussels.
  • The impacts of diel DO and pH cycles on early life stage bivalves depend on cycle duration, cycle intensity, and species.

Abstract

Many economically important bivalves spawn during the summer months when diel cycles of dissolved oxygen (DO) and pH occur in estuaries. Little is known, however, regarding how cycles of differing durations and magnitudes affect these organisms. Here, larval bivalves (Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians) and juvenile mussels (Mytilus edulis) were exposed to cycles of low DO and pH of varying duration (4-, 6-, 8-, and 12-h) and strength (moderate: DO range ∼ 6 mg L−1, pH range ∼ 0.6 and severe: DO range ∼ 10 mg L−1, pH range ∼ 0.9) compared to positive (normoxic and normocapnic) and negative (hypoxic and acidified) static controls. Growth, survival, respiration and clearance rates were measured. During experiments, 12 h of nocturnal hypoxia and acidification coupled with mildly hyperoxic (∼11.3 mg L−1 DO) and hypocapnic (∼8.13 pH) conditions by day significantly reduced survival in larval C. virginicaM. mercenaria, and A. irradians in all experiments (p < 0.05), while 12 h of nocturnal hypoxia and acidification without hyperoxic and hypocapnic conditions did so in only half of experiments indicating that hyperoxia and hypocapnia were additional and significant stressors. Six hours of low DO/pH significantly reduced survival in only 16 % of experiments, indicating that larval bivalves are more impacted by longer duration and greater magnitude cycles of DO and pH compared to cycles of shorter duration or lower magnitude. Across species, M. mercenaria larvae were more resilient to nocturnal hypoxia and acidification than A. irradians and C. virginica. The growth and survival of juvenile M. edulis were unaffected by nocturnal hypoxia and acidification but mussels experienced significantly increased clearance and respiration rates under these conditions (p < 0.01) evidencing physiological mechanisms for coping with these stressors. Collectively, this study demonstrates that the impacts of diel DO and pH cycles on early life stage bivalves are dependent upon cycle duration, cycle intensity, bivalve life stage, and bivalve species.

Continue reading ‘Strength and duration of diel pH and dissolved oxygen cycles control the survival and performance of early life stage North Atlantic bivalves (Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians and Mytilus edulis)’

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