Human activities have significantly increased carbon dioxide emissions, leading to global warming and ocean acidification, which threaten marine ecosystems, including coral reefs with high biodiversity. Coral reef maintenance relies on a balance between calcium carbonate formation and dissolution. Among the processes, sandy sediments, covering vast areas and highly sensitive to ocean acidification, require urgent investigations to elucidate their dissolution mechanisms. However, conventional glass electrodes have limitations in continuous monitoring of the spatiotemporal distribution of pH within sediment. To address this, we developed a multichannel ion-sensitive field-effect transistor (ISFET)-pH sensor array with a tantalum oxide sensing membrane, which was embedded in the sediment to enable high-resolution and continuous pH monitoring. A 24-h pH monitoring experiment was conducted in coral reef sediments to validate the method. The performance of the sensor was evaluated through both laboratory and field observations, and a comparison with a conventional glass electrode confirmed that the ISFET-pH sensor provided stable pH measurements within the uncertainty range of the glass electrode. The developed sensor array is a low-cost and durable automatic measurement system, offering an alternative to conventional glass electrodes, which are expensive and fragile. However, optimizing sputtering conditions, annealing processes, and data processing techniques is necessary to reduce environmental influences and enhance measurement accuracy. The proposed array-based observation method enables the acquisition of high-resolution vertical pH profiles and is expected to contribute to the quantitative evaluation of the chemical role of sandy sediments and the elucidation of carbon cycling in coral reef ecosystems.
Continue reading ‘Embedding a multichannel ion-sensitive field-effect transistor-pH sensor array in marine sediments: a new approach for continuous in situ pH monitoring’Posts Tagged 'methods'
Embedding a multichannel ion-sensitive field-effect transistor-pH sensor array in marine sediments: a new approach for continuous in situ pH monitoring
Published 31 July 2025 Science ClosedTags: chemistry, methods
A new indicator can assess absorption capacity for carbon dioxide and ocean acidification
Published 30 July 2025 Science ClosedTags: chemistry, methods
The ocean has absorbed 25% of anthropogenic carbon dioxide emissions over the past 40 years, effectively slowing atmospheric carbon dioxide growth but causing ocean acidification. As acidification intensifies, the seawater absorption capacity for carbon dioxide will decline. While the Revelle factor has been used to assess carbon dioxide absorption, it becomes inapplicable at pH < 7.5. Here, we propose a new factor, γCO2, to better measure the absorption capacity for carbon dioxide and acidification. γCO2 decreases with increased partial pressure of carbon dioxide and decreased pH, indicating reduced absorption capacity and intensified acidification. In 2020, global surface ocean γCO2 was 15.50 ± 0.21, a 13% decline since 1992. Projections under SSP5-8.5 anticipate an average γCO2 of 4.72 by 2100, with 61.5% of global ocean regions below the critical threshold of γCO2 = 3.0, potentially harming aragonite-based organisms.
Continue reading ‘A new indicator can assess absorption capacity for carbon dioxide and ocean acidification’Total alkalinity measurements in small samples: methods based on CO2 equilibration and spectrophotometric pH
Published 21 July 2025 Science ClosedTags: methods

Highlights:
- Total alkalinity (AT) measurements via CO2 equilibration are rapid and precise.
- Equilibrations with a silicone membrane allow continuous AT measurements.
- Stopped-flow and direct equilibration methods significantly reduce sample volume.
- Equilibration methods can be integrated into multi-parameter instruments.
- AT and pH measurements require sample volumes as small as 0.5 to 1.5 milliliters.
Abstract
Background: Total alkalinity (AT) is a fundamental parameter in understanding the oceanic cycling of carbon dioxide (CO2). Measurements of the AT of natural waters are typically obtained through single- or multi-step titrations using a strong acid, with the endpoint pH determined via potentiometry or spectrophotometry. Conventional AT determinations are labor-intensive and require precise knowledge of the sample’s weight or volume. Equilibration with CO2 gas, with or without a membrane, can simplify the procedure and reduce the required sample volume while maintaining high precision.
Results: Several spectrophotometric AT methodologies involving CO2 gas as a titrant are presented: stopped-flow equilibration across a liquid core waveguide (LCW), continuous equilibration using gas-permeable silicone tubing, and direct bubbling with CO2 gas for measurements of small samples. Alkalinity determinations from CO2 equilibration are based on a simple linear relationship between AT, pCO2, and spectrophotometric pH. Incorporating an empirically derived, temperature-dependent calibration constant, E(T), eliminates the need for precise CO2 concentrations. Equilibration-based AT measurements demonstrated high precision (±1.0 to 2.0 μmol kg-1) and were in strong agreement with standard titration methods (±2.0 μmol kg-1). Novel spectrophotometric instrumentation is introduced, named the Minimal Volume Multiparameter Inorganic Carbon Analyzer (MVMICA), capable of precise pHT (±0.002) and AT measurements with volumes ∼1.0 mL. The accuracy of MVMICA over a wide range of conditions makes it invaluable for assessing carbonate chemistry in aquatic systems using limited available sample volumes.
Significance: The three methods presented in this paper offer flexible configurations, each adaptable for specific applications. Membrane equilibrations using Teflon AF 2400 LCW or silicone tubing are appropriate for automated analysis of waters, with potential for in situ AT determinations. Equilibration of samples across a silicone membrane facilitates rapid, continuous measurements. Alternatively, direct equilibration without a membrane enables analyses of samples as small as 0.50 mL.
Continue reading ‘Total alkalinity measurements in small samples: methods based on CO2 equilibration and spectrophotometric pH’Can sclerosponge skeletons record ocean acidification?: boron and carbon isotope ratios (δ11B and δ13C) in Acanthochaetetes wellsi from Okinoerabu Island, southwestern Japan
Published 21 July 2025 Science ClosedTags: biological response, laboratory, methods, North Pacific, paleo, porifera
Boron stable isotope ratios in biogenic calcium carbonate minerals are known to reflect the decreasing of seawater pH, and thus they can be a useful tracer to track the trend of the ocean acidification. While validation of boron isotopes as a tracer for seawater pH has mainly focused on foraminiferal and coral CaCO3, a few studies examined CaCO3 skeletons produced by sclerosponges. In this study, we investigated stable boron and carbon isotope ratios in two sclerosponge specimens (Acanthochaetetes wellsi), collected from Okinoerabu Island, Japan. Carbon isotope ratios in both specimens showed a continuous decrease over the estimated growth periods, indicating that the Suess effect is recorded in sclerosponge skeletons. In contrast, boron isotope ratios in one specimen decreased over time, but not in the other. These findings suggest further analysis of additional specimens is necessary to determine whether boron isotope ratios in sclerosponge skeletons are reliable recorder of ocean acidification.
Continue reading ‘Can sclerosponge skeletons record ocean acidification?: boron and carbon isotope ratios (δ11B and δ13C) in Acanthochaetetes wellsi from Okinoerabu Island, southwestern Japan’Iridium oxide thin film flexible ocean pH sensor based on electroplating deposition process
Published 16 July 2025 Science ClosedTags: methods

Highlights
- Demonstrates super-Nernstian sensitivity of −73.64 mV/pH for accurate readings.
- Rapid response kinetics with an 18.16 s stabilization time for quick assessments.
- Exceptional stability and minimal signal drift under varying ionic strength conditions.
- Cost-effective and easy to fabricate, ideal for reliable marine pH monitoring.
Abstract
The pH level is a critical factor influencing the growth and development of marine life, environmental shifts, and various industrial and agricultural production activities. Consequently, there is an urgent requirement for a high-precision ocean pH sensor to accurately assess the pH levels in seawater. The pH-sensitive electrode was fabricated using a polyimide substrate coated with an electrodeposited iridium oxide thin film. This iridium oxide-based electrode demonstrated exceptional pH-sensing performance, including a super-Nernstian sensitivity of −73.64 mV/pH, rapid response kinetics (18.16 s stabilization time), and excellent stability across repeated pH cycling tests (3↔6 and 8↔10). Furthermore, the sensor exhibited strong resistance to environmental interference, with a linear temperature coefficient of −1.6 mV/°C and minimal signal drift (<5 mV) under varying ionic strength conditions. Practical validation through pH measurements in standardized buffer solutions and complex real-world samples confirmed its measurement reliability. Leveriting the advantages of cost-effectiveness and straightforward fabrication, this electroplated iridium oxide thin film presents a compelling solution for marine pH monitoring applications, particularly in scenarios requiring high stability and tolerance to fluctuating environmental parameters.
Continue reading ‘Iridium oxide thin film flexible ocean pH sensor based on electroplating deposition process’Report presenting the data quality aspects in relation with the submission mechanism requested to report towards the SDG indicator 14.3.1
Published 7 July 2025 Newsletters and reports ClosedTags: chemistry, methods
This document is MINKE’s Deliverable 9.12 “Report presenting the data quality aspects in relation with the submission mechanism requested to report towards the SDG indicator 14.3.1”. It describes MINKE perspectives on the monitoring of carbonate system variables, in particular pHT, in order to address the SDG 14.3 request regarding ocean acidification. The D9.12 summarises the carbonate chemistry Best Practices, uncertainty concepts and calculations discussed within MINKE and will be useful for reporting carbonate variables to the SDG ocean acidification portal.
Continue reading ‘Report presenting the data quality aspects in relation with the submission mechanism requested to report towards the SDG indicator 14.3.1’Assessing pteropod shell dissolution to advance ocean monitoring techniques: a methods comparison of SEM, CT, and light microscopy
Published 30 June 2025 Science ClosedTags: biological response, methods, mollusks, morphology, zooplankton
Pteropods are marine planktonic snails that are used as bioindicators of ocean acidification due to their thin, aragonitic shells, and ubiquity throughout the world’s oceans; their responses include decreased size, reduced shell thickness, and increased shell dissolution. Shell dissolution has been measured with a variety of metrics involving light microscopy, scanning electron microscopy (SEM), and computed tomography (CT). While CT and SEM metrics offer high resolution imaging, these analyses are cost- and time-intensive relative to light microscopy analysis. This research compares light microscopy, CT, and SEM shell dissolution metrics across three pteropod species: Limacina helicina, Limacina retroversa, and Heliconoides inflatus. Sourced from multiple localities, these specimens lived in tropical to subpolar environments and were exposed to varying aragonite saturations states due to oceanographic differences in these environments. Specimens were evaluated with light microscopy for the Limacina Dissolution Index (LDX), with SEM for percent of pristine shell coverage and maximum dissolution type, and with CT for whole-shell thickness. LDX and the percentage of pristine shell determined via SEM were highly correlated in all three species’ datasets. For L. retroversa, LDX was also significantly correlated to SEM maximum dissolution type. Although the genera Heliconoides and Limacina have different shell microstructures, the relationship between LDX and SEM dissolution did not vary by species. The CT metric for shell thickness was not significantly correlated to any other dissolution metrics for any species. However, severely dissolved areas apparent in SEM were visually discernible in CT thickness heatmaps. While CT may not detect minor shell dissolution, previous studies have used CT to detect reduced calcification in response to ocean acidification. SEM is ideal for detecting the onset of dissolution, but SEMing large numbers of specimens may not be practical due to monetary and time constraints. LDX, on the other hand, is a fast and cost-effective metric that is strongly correlated with SEM metrics, regardless of the oceanographic conditions that those species experienced. These results suggest that an efficient ocean acidification monitoring strategy is to evaluate all pteropod specimens via LDX and to then SEM a subset of those specimens.
Continue reading ‘Assessing pteropod shell dissolution to advance ocean monitoring techniques: a methods comparison of SEM, CT, and light microscopy’Sea-Bird Scientific reintroduces stable, long-term pH instruments
Published 8 May 2025 Media coverage ClosedTags: methods
Sea-Bird Scientific has announced that the company has restarted production and service of their cutting-edge Shallow SeaFET™ and Shallow SeapHOx™. After rigorous qualification, testing, and field deployments, the company is now accepting requests for quotes and service.
These high-tech pH ocean sensors are equipped with advanced Ion-Sensitive Field Effect Transistor (ISFET) technology and are ideal for all coastal applications up to 50 meters deep.
The Shallow SeaFET V2 uses the ISFET technology for stable, long-term pH measurements in salt water and has been used extensively around the globe for ocean acidification research, coral reef research, coastal marine biology, and environmental monitoring. The Shallow SeaFET V2 can be autonomous with internal power, sample scheduling, and data logging capabilities.
The Shallow SeapHOx V2 combines the Shallow SeaFET V2 with the SBE 37-SMP-ODO MicroCAT CTD+DO sensor. This integration enables comprehensive data collection of pH alongside critical oceanographic and biological measurements of temperature, salinity, and oxygen. The Shallow SeapHOx V2 benefits from the SBE 37SMP-ODO’s pumped flow path and anti-fouling technology, extending deployment durations in some cases.
Continue reading ‘Sea-Bird Scientific reintroduces stable, long-term pH instruments’A simple CO2 enrichment incubator for investigating physiological responses of harmful algae to ocean acidification
Published 23 April 2025 Science ClosedTags: biological response, growth, methods, morphology, phytoplankton
A CO2 manipulation incubation system using off-the-shelf components was developed to study the effects of ocean acidification (OA) on marine microalgae. The system successfully monitored CO2 concentrations in real time at the desired levels. The incubation experiment was based on the IPCC’s CMIP6 worst-case scenario (SSP5-8.5), with elevated CO2 concentrations of up to 1000 ppm. Under these conditions, exposure to 1000 ppm CO2 significantly increased growth rate, cell diameter, and biovolume of harmful microalgae, Alexandrium tamiyavanichii. These effects were more pronounced, highlighting the potential for ocean acidification to exacerbate harmful algal blooms. The study also emphasized the importance of accounting for light attenuation in the incubation setup, revealing a 20% loss in light within culture bottles due to uneven light distribution. Correcting light intensity variations caused by the materials of the culture vessels was essential for unbiased growth assessments.
Continue reading ‘A simple CO2 enrichment incubator for investigating physiological responses of harmful algae to ocean acidification’Sonardyne integrates -4H-JENA sensor into ADCP for ocean acidification research
Published 17 April 2025 Media coverage ClosedTags: methods

Underwater technology manufacturer Sonardyne International Ltd has integrated a CONTROS HydroC dissolved CO2 sensor from -4H-JENA engineering into its Origin 600 ADCP (Acoustic Doppler Current Profiler), unlocking new capabilities for marine research into ocean acidification.
The combined solution enables precise, real-time monitoring of dissolved carbon dioxide levels alongside detailed current profiling, providing insights into the impacts of rising CO2 concentrations on marine ecosystems and biodiversity.
The CONTROS HydroC dissolved CO2 sensor from -4H-JENA engineering is designed specifically for accurate and reliable measurement of dissolved carbon dioxide in marine environments. Such sensors are essential tools for understanding ocean acidification. The HydroC sensor integrates with Sonardyne’s Origin 600 through either direct connection to the ADCP’s external sensor port or via the versatile Origin E-Mux multiplexer, which supports up to four external sensors simultaneously and extends power supply capability for longer deployments.
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Continue reading ‘Sonardyne integrates -4H-JENA sensor into ADCP for ocean acidification research’New capability in autonomous ocean carbon observations using the autosub long-range AUV equipped with novel pH and total alkalinity sensors
Published 11 April 2025 Science ClosedTags: chemistry, methods, North Atlantic

The development of marine autonomous platforms has improved our capability to gather ocean observations at fine spatial scales and high temporal frequency, which can be used to better measure, characterize, and model ocean carbon. As part of the OCEANIDS program, novel carbonate sensors were integrated into the Autosub Long-Range (ALR) autonomous underwater vehicle (AUV) and deployed in the Celtic Sea. Autonomous Lab-On-Chip (LOC) sensors measured pH and total alkalinity (TA) while onboard the ALR. Using interpolation, the ALR-sensor data set is compared against CTD co-samples. The average differences between the LOC sensor and co-sample pH range from −0.011 to −0.015. The TA sensor data agrees with co-samples within 1–2 μmol kg–1 on average. Biogeochemical water properties differing between CTD and ALR observations reveal correlations to carbonate parameter variations. The LOC sensors enabled the characterization of the marine carbonate system from autonomous subsurface measurements for the first time. Sensor pH and TA data were used to calculate dissolved inorganic carbon (DIC), partial pressure of CO2 (pCO2), and aragonite saturation state (ΩAr) and are compared with CTD co-samples with mean residuals of 4–7 μmol kg–1, 10–17 μatm, and −0.03 to −0.06, respectively. Future perspectives on sensor deployment and analysis are discussed.
Continue reading ‘New capability in autonomous ocean carbon observations using the autosub long-range AUV equipped with novel pH and total alkalinity sensors’Evaluating data quality of coastal spectrophotometric pH measurements: implications for ocean acidification and ocean alkalinity enhancement research
Published 10 April 2025 Science ClosedTags: chemistry, methods
pH, which reflects the thermodynamic balance of acid-base systems in seawater, serves as a key indicator of the interplay between acidic and basic components in marine environments. When combined with another parameter, such as TA, DIC, or pCO2 the entire inorganic carbon system can be derived. However, each parameter presents methodological challenges that may introduce random or systematic errors, which then propagate through subsequent calculations. In coastal and estuarine environments, errors can become more pronounced, as standard operating procedures (SOPs) developed for open-ocean conditions may not adequately address the complexities unique to these regions. Measuring more than two parameters enables further insight into systematic errors through the evaluation of internal consistency, where existing data products often reveal pH-dependent offsets between measured pH and pH calculated from measured TA and DIC. These offsets may arise from errors in pH measurements, TA and DIC measurements, or the equilibrium constants used in the calculations, and are therefore difficult to tease apart. Comparing measurements from different research groups can help identify the specific measurement biases responsible for these offsets; however, the lack of inter-comparison studies, particularly in field settings, hinders our understanding. This work advocates for integrating internal consistency and inter-comparison studies in field conditions, as conducting them at sea provides a realistic evaluation of reproducibility between research groups. Chapter 2 utilizes this method by comparing at-sea spectrophotometric pH (pHspec) measurements from two research groups aboard the R/V Coriolis in June 2022 in the Gulf of St. Lawrence and the Lower St. Lawrence Estuary during the Tracer Release Deep Experiment 2 (TReX2) cruise. This combined analysis of reproducibility and internal consistency highlights how even minor methodological differences can substantially affect data quality, and in turn, shape data interpretation. These impacts are particularly pronounced when estimating potential bias from unidentified, excess components of TA (TAx), expected to be non-negligible in estuarine environments, where the two groups had notably different estimates. Chapter 3 draws conclusions from the discussion of data quality in estuarine environments from Chapter 2, focusing on the potential role of pHspec in Monitoring, Reporting, and Verification (MRV) frameworks for ocean alkalinity enhancement (OAE), a proposed marine carbon dioxide removal (mCDR) strategy. It incorporates insights from OAE field trial work in the Bedford Basin, Halifax, a fjord-like estuarine system, to assess the quality of pHspec, TA, and DIC data, offering an assessment of the reliability of these measurements for interpreting potential carbon dioxide removal. This chapter also includes suggestions for a future protocol for observational components of MRV frameworks.
Continue reading ‘Evaluating data quality of coastal spectrophotometric pH measurements: implications for ocean acidification and ocean alkalinity enhancement research’Chapter 13 – Future strategy for a resilient production and certification of seawater reference materials for the carbonate system
Published 1 April 2025 Science ClosedTags: methods
Ocean inorganic carbon research is crucial to quantify the global ocean uptake of atmospheric carbon dioxide (CO2), understand its spatiotemporal variability and mechanisms that control this process, and monitor ocean acidification. This requires high-quality measurements of the seawater carbonate system that rely on the availability of reference materials (RMs). The COVID-19 pandemic highlighted the fragility of the production system of the seawater RMs for the carbonate system, currently depending on one single laboratory. With that in mind, a new model for seawater RMs for the carbonate system, centered on regional hubs, is being developed to create a more resilient system. Challenges associated with establishing new production centers, such as funding their startup and ongoing costs, ensuring the quality and stability of the materials, and staff training are discussed. Opportunities to minimize the cost of these RMs and to supply certified or indicative values for currently uncertified carbonate system variables are explored. Additionally, a vision to integrate the new model into the global metrology landscape whereby the materials are comparable and metrologically traceable to the International System of Units is highlighted. As more laboratories are seeking to undertake seawater carbonate system measurements, access to these RMs is ever more critical.
Continue reading ‘Chapter 13 – Future strategy for a resilient production and certification of seawater reference materials for the carbonate system’Chapter 12 – Development of multiparametric standard seawater (MSSW) for CO2 parameters, dissolved oxygen, and density of seawater
Published 27 March 2025 Science ClosedTags: methods
Multiparametric Standard Seawater (MSSW) is being developed based on the technology used to manufacture the reference material for nutrients in seawater (RMNS), without adding mercuric chloride to sterilize it, but by adopting aluminum bottles and plastic inner caps with high impermeability to gas and water vapor. The history, current status, and future plans for the development of MSSW for measurements of Practical Salinity, density, dissolved inorganic carbon, total alkalinity, pH, dissolved oxygen (DO), and dissolved organic matter are discussed. Substances that interfere with the Winkler method for DO determination (nitrite, iodate, and hydrogen peroxide) were evaluated for MSSW. The values of the parameters of interest were relatively homogeneous, but the concentrations of dissolved organic carbon depended on the serial number in the lot tested. Long-term stabilities were good in most cases, but DO concentrations began to gradually decrease immediately after production and appeared to stabilize a few years later. The Practical Salinity also tended to decrease (–0.00015 year–1), and the cause of the decreasing trend urgently needs to be clarified. One possibility is an increasing trend (about +0.00015 year–1) of the Practical Salinity of IAPSO standard seawater for salinity measurements.
Continue reading ‘Chapter 12 – Development of multiparametric standard seawater (MSSW) for CO2 parameters, dissolved oxygen, and density of seawater’On the measurement of ocean acidity with ambient sound
Published 12 March 2025 Science ClosedTags: chemistry, field, methods, North Pacific, South Pacific
The volume-integrated pH of seawater can be determined from the frequency and depth dependence of wind-generated ambient noise in the ocean. Over the 1 − 10 kHz frequency band, three main processes contribute to the acoustic attenuation in seawater: the chemical relaxation of boric acid and magnesium carbonate (< 3 kHz, related to pH), and magnesium sulfate (> 3 kHz, unrelated to pH). When local winds are strong (> 10 m/s), the ambient noise is dominated by locally generated surface noise, which exhibits a depth-independent directionality, and weak frequency and depth-dependent intensity. By measuring the depth-dependence of the spectral slope, the pH may be estimated from a comparison of the experimental data with an analytical model of ambient noise. Measurements of the depth-dependent ambient noise field were carried out in the Philippine Sea, Mariana Trench, and Tonga Trench from 2009 to 2021. The wideband (5 Hz – 30 kHz) acoustic data were recorded with untethered, free-falling, autonomous instrument platforms known as Deep Sound, equipped with two or four hydrophones. In all the data collected, the power spectral slopes became steeper with depth due to the stronger attenuation of high frequencies compared to low frequencies. Depth-averaged pH values, ranging from 7.68 to 8.35, were obtained from eight instrument drops. The noise spectral method, which has the potential for determining the depth-averaged value of pH, with the averaging depth being adjustable, could be suitable for the long-term passive acoustic monitoring of ocean acidity.
Continue reading ‘On the measurement of ocean acidity with ambient sound’Assessing benthic invertebrate vulnerability to ocean acidification and de-oxygenation in California: the importance of effective oceanographic monitoring networks
Published 21 February 2025 Science ClosedTags: biological response, chemistry, crustaceans, echinoderms, fisheries, methods, multiple factors, oxygen, policy, review
Greenhouse gas emissions from land-use change, fossil fuel, agriculture, transportation, and electricity sectors expose marine ecosystems to overlapping environmental stressors. Existing climate vulnerability assessment methods analyze the frequency of extreme conditions but often minimally consider how environmental data gaps hinder assessments. Here, we show an approach that assesses vulnerability and the uncertainty introduced by monitoring data gaps, using a case study of ocean acidification and deoxygenation in coastal California. We employ 5 million publicly available oceanographic observations and existing studies on species responses to low pH, low oxygen conditions to calculate vulnerability for six ecologically and economically valuable benthic invertebrate species: red sea urchin (Mesocentrotus franciscanus), purple sea urchin (Strongylocentrotus purpurpatus), warty sea cucumber (Apostichopus parvimensis), pink shrimp (Pandalus jordani), California spiny lobster (Panulirus interruptus), and Dungeness crab (Metacarncinus magister). Further, we evaluate the efficacy of current monitoring programs by examining how data gaps heighten associated uncertainty. We find that most organisms experience low oxygen (<35% saturation) conditions less frequently than low pH ( < 7.6) conditions. It is only deeper dwelling (>75 m depth) life stages such as Dungeness crab adults and pink shrimp embryos, juveniles, and adults that experience more frequent exposure to low oxygen conditions. Adult Dungeness crabs experience the strongest seasonal variation in exposure. Though these trends are intriguing, exposure remains low for most species despite well-documented pH and oxygen declines and strengthening upwelling in the central portions of the California Current. Seasonal biases of data collection and sparse observations near the benthos and at depths where organisms most frequently experience stressful conditions undermine exposure estimates. Herein we provide concrete examples of how pink shrimp and Dungeness crab fisheries may be impacted by our findings, and provide suggestions for incorporating oceanographic data into management plans. By limiting our scope to California waters and assessing the limitations presented by current monitoring coverage, this study aims to provide a granular, actionable framework that policymakers and managers can build from to prioritize targeted enhancements and sustained funding of oceanographic monitoring recommendations.
Continue reading ‘Assessing benthic invertebrate vulnerability to ocean acidification and de-oxygenation in California: the importance of effective oceanographic monitoring networks’Autonomous sensor for in situ measurements of total alkalinity in the ocean
Published 18 February 2025 Science ClosedTags: chemistry, methods
Total alkalinity (TA) is one of the measurable parameters that characterize the oceanic carbonate system. A high temporal and spatial frequency in TA data can lead to better measurements, modeling, and understanding of the carbon cycle in aquatic systems, providing insights into problems from global climate change to ecosystem functioning. However, there are very few autonomous technologies for in situ TA measurements, and none with field demonstrations below 2 m depth. To meet this need in marine observing capabilities, we present a submersible sensor for autonomous in situ TA measurements to full ocean depths. This sensor uses lab-on-a-chip technology to sample seawater and perform single-point open-cell titration with an optical measurement. It can carry multiple calibration materials on board, allowing for routine recalibration and quality checks in the field. The sensor was characterized in the laboratory and in a pressure testing facility to 600 bar (equivalent to 6 km depth) and deployed in a shallow estuary, on a lander at 120 m depth, and on an autonomous underwater vehicle. With a demonstrated precision and accuracy regularly better than 5 μmol kg–1 in field deployments, this sensor has the potential to dramatically expand our ability to perform long-term autonomous measurements of the marine carbonate system.
Continue reading ‘Autonomous sensor for in situ measurements of total alkalinity in the ocean’Innovations in ocean biogeochemical instrumentation and monitoring
Published 11 February 2025 Science ClosedTags: biogeochemistry, chemistry, field, methods
Anthropogenic activities are driving changes in ocean biogeochemistry, which can be monitored through instruments and sensors deployed across diverse platforms in even the harshest marine environments. Continued monitoring of these changes demands innovations in instrumentation, calibration and quality control to effectively capture dynamic signals and ensure comprehensive ocean coverage. This dissertation focuses on advancements in oceanographic pH sensors, starting with the longest near-continuous ocean pH dataset collected using ionsensitive field effect transistor (ISFET) technology at Scripps Pier. A new in situ calibration approach, based on direct tris buffer injection, was compared to the traditional bottle collection method, yielding a fourfold improvement in repeatability with an uncertainty of 0.006 pH. Additionally, an automated calibration system integrated into the sensor package was evaluated, offering near real-time, self-calibrating capability for ocean acidification and biogeochemical monitoring programs. To continue the discourse of pH sensor technology in the second section of this dissertation, a novel optical pH sensor was evaluated in laboratory settings to establish its accuracy and precision, response time, temperature and pressure sensitivity, and calibration techniques which improved accuracy over factory methods. Field tests of the optical pH sensor across diverse marine environments—deep ocean, dynamic nearshore, and open ocean profiling—provided guidelines for field calibration, correction and optimal field use. In a scaled-up sense, the final section of this dissertation leveraged pH and other biogeochemical sensors on BGC-Argo profiling floats to explore biogeochemical variability in the equatorial Pacific from 2019 to 2024. While the region has extensive physical data, subsurface biogeochemical observations and their links to El Niño and La Niña cycles are sparse. These floats revealed distinct biogeochemical patterns driven by vertical movement of the mixed layer depth, meridional subtropical water transport and primary production shifts associated with ENSO phases. Overall, this work combines new sensor technologies and analytical methods to provide essential data, instrument guidelines and reveal insights into ocean biogeochemical phenomena. Ongoing instrumentation development and monitoring will be critical to expand and deepen our understanding of how human-driven impacts are transforming our oceans.
Continue reading ‘Innovations in ocean biogeochemical instrumentation and monitoring’Perspectives from developers and users of the GOA-ON in a box kit: a model for capacity sharing in ocean sciences
Published 24 January 2025 Science ClosedTags: chemistry, methods
Providing reliable instrumentation that enables collection of high-quality, comparable data is one of the most challenging aspects of establishing ocean acidification monitoring programs. This is especially true for under-resourced countries, where such data are mostly unavailable. In 2016, The Ocean Foundation (TOF) worked with international bodies, including the International Atomic Energy Agency’s Ocean Acidification International Coordination Centre and the Global Ocean Acidification Observing Network (GOA-ON), and subject matter experts to develop a set of equipment known as the “GOA-ON in a Box” kit (The Ocean Foundation, 2017). This comprehensive kit provides researchers with everything needed—down to specialized rubber bands—to obtain weather-quality carbonate system measurements as defined by GOA-ON (Newton et al., 2015). Data are generated from spectrophotometric measurements of pHT and manual titrations for total alkalinity from discrete samples as well as in situ sensors, the iSAMI-pH and a CTD. The kit’s modular design, composed of nearly 100 unique items, makes it much less expensive than comparable integrated systems and allows for easier troubleshooting and replacement of supplied spare components.
Continue reading ‘Perspectives from developers and users of the GOA-ON in a box kit: a model for capacity sharing in ocean sciences’An aquaria set-up for long-term, multiple-stressor research in marine organisms
Published 17 January 2025 Science ClosedTags: biological response, laboratory, methods, multiple factors, oxygen, temperature
- Multiple stressor research in aquaria is a useful approach to better understand the ecophysiology of marine species under different environmental conditions, including global change scenarios. Long-term experiments are helpful to detect the response of sustained exposure to selected environmental conditions. Here, we present an experimental set-up suitable to run long-term experiments, composed of a life support system, a cost-effective aquaria set-up and an open-source controller based on the use of a Raspberry Pi. In this set-up, temperature, pH and dissolved oxygen (DO) are individually manipulated and simultaneously controlled in eight different treatments.
- To prove the efficacy of the set-up, we provide an assessment over a nine-month experiment on a deep-sea coral species, combining values from current in situ and IPCC AR5 RCP 8.5 scenarios for the aforementioned parameters. Recorded data from the controllers and independent measurements (e.g. cross-checking with portable multiparameter devices and laboratory analyses) throughout the experimental time have been analysed and results have been discussed.
- Overall, the experimental set-up performed well, proving the stability of the parameters over time, both individually and in combination. On average, low and high-temperature treatments varied ~0.4 and 0.3°C, respectively. Low pH treatments were maintained within 0.05 pH units, whereas ambient pH treatments varied ~0.04 pH units. Low DO treatments had a variation of ~0.3 mg L−1, and ambient DO treatments varied ~0.2 mg L−1. No significant differences between scenarios for any parameter were detected (p < 0.05). The resulting programming code to read, control and register the values for these parameters is provided to contribute to its replicability across institutions.
- The set-up performed well over extensive periods while providing a customisable controller as a cost-effective alternative. The versatility of the system, allowing to work with different species, environments and scenarios makes it valuable for aquaria experiments where interactions of multiple environmental factors need to be tested.


